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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF N5-CARBOXYAMINOIMIDAZOLE SYNTHASE FROM ASPERGILLUS CLAVATUS IN COMPLEX WITH ADP AND 5-AMINOIMADAZO RIBONUCLEOTIDE
Keywords PURINE BIOSYNTHESIS; ATP-GRASP, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3K5I     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PHOSPHORIBOSYL-AMINOIMIDAZOLE CARBOXYLASE  A 381 2953 0
2  Protein   PHOSPHORIBOSYL-AMINOIMIDAZOLE CARBOXYLASE  B 376 2916 0
3  Protein   PHOSPHORIBOSYL-AMINOIMIDAZOLE CARBOXYLASE  C 382 2964 0
4  Protein   PHOSPHORIBOSYL-AMINOIMIDAZOLE CARBOXYLASE  D 373 2886 0
5  Ligand   PHOSPHORIBOSYL-AMINOIMIDAZOLE CARBOXYLASE  A 5 0 61
6  Ligand   PHOSPHORIBOSYL-AMINOIMIDAZOLE CARBOXYLASE  B 3 0 47
7  Ligand   PHOSPHORIBOSYL-AMINOIMIDAZOLE CARBOXYLASE  C 4 0 60
8  Ligand   PHOSPHORIBOSYL-AMINOIMIDAZOLE CARBOXYLASE  D 3 0 47
9 Water     1130 0 1130
total       2657 11719 1345
Proteins
Unit 1 MET1 TRP2 ASN3 SER4 ARG5 LYS6 VAL7 GLY8 VAL9 LEU10 GLY11 GLY12 GLY13 GLN14 LEU15 GLY16 ARG17 MET18 LEU19 VAL20 GLU21 SER22 ALA23 ASN24 ARG25 LEU26 ASN27 ILE28 GLN29 VAL30 ASN31 VAL32 LEU33 ASP34 ALA35 ASP36 ASN37 SER38 PRO39 ALA40 LYS41 GLN42 ILE43 SER44 ALA45 HIS46 ASP47 GLY48 HIS49 VAL50 THR51 GLY52 SER53 PHE54 LYS55 GLU56 ARG57 GLU58 ALA59 VAL60 ARG61 GLN62 LEU63 ALA64 LYS65 THR66 CYS67 ASP68 VAL69 VAL70 THR71 ALA72 GLU73 ILE74 GLU75 HIS76 VAL77 ASP78 THR79 TYR80 ALA81 LEU82 GLU83 GLU84 VAL85 ALA86 SER87 GLU88 VAL89 LYS90 ILE91 GLU92 PRO93 SER94 TRP95 GLN96 ALA97 ILE98 ARG99 THR100 ILE101 GLN102 ASN103 LYS104 PHE105 ASN106 GLN107 LYS108 GLU109 HIS110 LEU111 ARG112 LYS113 TYR114 GLY115 ILE116 PRO117 MET118 ALA119 GLU120 HIS121 ARG122 GLU123 LEU124 VAL125 GLU126 ASN127 THR128 PRO129 ALA130 GLU131 LEU132 ALA133 LYS134 VAL135 GLY136 GLU137 GLN138 LEU139 GLY140 TYR141 PRO142 LEU143 MET144 LEU145 LYS146 SER147 LYS148 THR149 MET150 ALA151 TYR152 ASP153 GLY154 ARG155 GLY156 ASN157 PHE158 ARG159 VAL160 ASN161 SER162 GLN163 ASP164 ASP165 ILE166 PRO167 GLU168 ALA169 LEU170 GLU171 ALA172 LEU173 LYS174 ASP175 ARG176 PRO177 LEU178 TYR179 ALA180 GLU181 LYS182 TRP183 ALA184 TYR185 PHE186 LYS187 MET188 GLU189 LEU190 ALA191 VAL192 ILE193 VAL194 VAL195 LYS196 THR197 LYS198 ASP199 GLU200 VAL201 LEU202 SER203 TYR204 PRO205 THR206 VAL207 GLU208 THR209 VAL210 GLN211 GLU212 ASP213 SER214 ILE215 CYS216 LYS217 LEU218 VAL219 TYR220 ALA221 PRO222 ALA223 ARG224 ASN225 VAL226 SER227 ASP228 ALA229 ILE230 ASN231 GLN232 LYS233 ALA234 GLN235 GLU236 LEU237 ALA238 ARG239 LYS240 ALA241 VAL242 ALA243 ALA244 PHE245 ASP246 GLY247 LYS248 GLY249 VAL250 PHE251 GLY252 VAL253 GLU254 MET255 PHE256 LEU257 LEU258 GLU259 ASP260 ASP261 SER262 ILE263 MET264 LEU265 CYS266 GLU267 ILE268 ALA269 SER270 ARG271 ILE272 HIS273 ASN274 SER275 GLY276 HIS277 TYR278 THR279 ILE280 GLU281 GLY282 CYS283 ALA284 LEU285 SER286 GLN287 PHE288 ASP289 ALA290 HIS291 LEU292 ARG293 ALA294 ILE295 LEU296 ASP297 LEU298 PRO299 ILE300 PRO301 ALA302 GLN303 SER304 LEU305 GLU306 ILE307 ARG308 GLN309 PRO310 SER311 ILE312 MET313 LEU314 ASN315 ILE316 ILE317 GLY318 GLY319 ALA320 ALA321 PRO322 ASP323 THR324 HIS325 LEU326 GLN327 ALA328 ALA329 GLU330 CYS331 ALA332 LEU333 SER334 ILE335 PRO336 ASN337 ALA338 SER339 ILE340 HIS341 LEU342 TYR343 SER344 LYS345 GLY346 ALA347 ALA348 LYS349 PRO350 GLY351 ARG352 LYS353 MET354 GLY355 HIS356 ILE357 THR358 VAL359 THR360 ALA361 PRO362 THR363 MET364 HIS365 GLU366 ALA367 GLU368 THR369 HIS370 ILE371 GLN372 PRO373 LEU374 ILE375 ASP376 VAL377 VAL378 ASP379 ARG380 ILE381
Unit 2 MET1 TRP2 ASN3 SER4 ARG5 LYS6 VAL7 GLY8 VAL9 LEU10 GLY11 GLY12 GLY13 GLN14 LEU15 GLY16 ARG17 MET18 LEU19 VAL20 GLU21 SER22 ALA23 ASN24 ARG25 LEU26 ASN27 ILE28 GLN29 VAL30 ASN31 VAL32 LEU33 ASP34 ALA35 ASP36 ASN37 SER38 PRO39 ALA40 LYS41 GLN42 ILE43 SER44 ALA45 HIS46 ASP47 GLY48 HIS49 VAL50 THR51 GLY52 SER53 PHE54 LYS55 GLU56 ARG57 GLU58 ALA59 VAL60 ARG61 GLN62 LEU63 ALA64 LYS65 THR66 CYS67 ASP68 VAL69 VAL70 THR71 ALA72 GLU73 ILE74 GLU75 HIS76 VAL77 ASP78 THR79 TYR80 ALA81 LEU82 GLU83 GLU84 VAL85 ALA86 SER87 GLU88 VAL89 LYS90 ILE91 GLU92 PRO93 SER94 TRP95 GLN96 ALA97 ILE98 ARG99 THR100 ILE101 GLN102 ASN103 LYS104 PHE105 ASN106 GLN107 LYS108 GLU109 HIS110 LEU111 ARG112 LYS113 TYR114 GLY115 ILE116 PRO117 MET118 ALA119 GLU120 HIS121 ARG122 GLU123 LEU124 VAL125 GLU126 ASN127 THR128 PRO129 ALA130 GLU131 LEU132 ALA133 LYS134 VAL135 GLY136 GLU137 GLN138 LEU139 GLY140 TYR141 PRO142 LEU143 MET144 LEU145 LYS146 SER147 LYS148 THR149 ARG155 GLY156 ASN157 PHE158 ARG159 VAL160 ASN161 SER162 GLN163 ASP164 ASP165 ILE166 PRO167 GLU168 ALA169 LEU170 GLU171 ALA172 LEU173 LYS174 ASP175 ARG176 PRO177 LEU178 TYR179 ALA180 GLU181 LYS182 TRP183 ALA184 TYR185 PHE186 LYS187 MET188 GLU189 LEU190 ALA191 VAL192 ILE193 VAL194 VAL195 LYS196 THR197 LYS198 ASP199 GLU200 VAL201 LEU202 SER203 TYR204 PRO205 THR206 VAL207 GLU208 THR209 VAL210 GLN211 GLU212 ASP213 SER214 ILE215 CYS216 LYS217 LEU218 VAL219 TYR220 ALA221 PRO222 ALA223 ARG224 ASN225 VAL226 SER227 ASP228 ALA229 ILE230 ASN231 GLN232 LYS233 ALA234 GLN235 GLU236 LEU237 ALA238 ARG239 LYS240 ALA241 VAL242 ALA243 ALA244 PHE245 ASP246 GLY247 LYS248 GLY249 VAL250 PHE251 GLY252 VAL253 GLU254 MET255 PHE256 LEU257 LEU258 GLU259 ASP260 ASP261 SER262 ILE263 MET264 LEU265 CYS266 GLU267 ILE268 ALA269 SER270 ARG271 ILE272 HIS273 ASN274 SER275 GLY276 HIS277 TYR278 THR279 ILE280 GLU281 GLY282 CYS283 ALA284 LEU285 SER286 GLN287 PHE288 ASP289 ALA290 HIS291 LEU292 ARG293 ALA294 ILE295 LEU296 ASP297 LEU298 PRO299 ILE300 PRO301 ALA302 GLN303 SER304 LEU305 GLU306 ILE307 ARG308 GLN309 PRO310 SER311 ILE312 MET313 LEU314 ASN315 ILE316 ILE317 GLY318 GLY319 ALA320 ALA321 PRO322 ASP323 THR324 HIS325 LEU326 GLN327 ALA328 ALA329 GLU330 CYS331 ALA332 LEU333 SER334 ILE335 PRO336 ASN337 ALA338 SER339 ILE340 HIS341 LEU342 TYR343 SER344 LYS345 GLY346 ALA347 ALA348 LYS349 PRO350 GLY351 ARG352 LYS353 MET354 GLY355 HIS356 ILE357 THR358 VAL359 THR360 ALA361 PRO362 THR363 MET364 HIS365 GLU366 ALA367 GLU368 THR369 HIS370 ILE371 GLN372 PRO373 LEU374 ILE375 ASP376 VAL377 VAL378 ASP379 ARG380 ILE381
Unit 3 MET1 TRP2 ASN3 SER4 ARG5 LYS6 VAL7 GLY8 VAL9 LEU10 GLY11 GLY12 GLY13 GLN14 LEU15 GLY16 ARG17 MET18 LEU19 VAL20 GLU21 SER22 ALA23 ASN24 ARG25 LEU26 ASN27 ILE28 GLN29 VAL30 ASN31 VAL32 LEU33 ASP34 ALA35 ASP36 ASN37 SER38 PRO39 ALA40 LYS41 GLN42 ILE43 SER44 ALA45 HIS46 ASP47 GLY48 HIS49 VAL50 THR51 GLY52 SER53 PHE54 LYS55 GLU56 ARG57 GLU58 ALA59 VAL60 ARG61 GLN62 LEU63 ALA64 LYS65 THR66 CYS67 ASP68 VAL69 VAL70 THR71 ALA72 GLU73 ILE74 GLU75 HIS76 VAL77 ASP78 THR79 TYR80 ALA81 LEU82 GLU83 GLU84 VAL85 ALA86 SER87 GLU88 VAL89 LYS90 ILE91 GLU92 PRO93 SER94 TRP95 GLN96 ALA97 ILE98 ARG99 THR100 ILE101 GLN102 ASN103 LYS104 PHE105 ASN106 GLN107 LYS108 GLU109 HIS110 LEU111 ARG112 LYS113 TYR114 GLY115 ILE116 PRO117 MET118 ALA119 GLU120 HIS121 ARG122 GLU123 LEU124 VAL125 GLU126 ASN127 THR128 PRO129 ALA130 GLU131 LEU132 ALA133 LYS134 VAL135 GLY136 GLU137 GLN138 LEU139 GLY140 TYR141 PRO142 LEU143 MET144 LEU145 LYS146 SER147 LYS148 THR149 MET150 ALA151 TYR152 ASP153 GLY154 ARG155 GLY156 ASN157 PHE158 ARG159 VAL160 ASN161 SER162 GLN163 ASP164 ASP165 ILE166 PRO167 GLU168 ALA169 LEU170 GLU171 ALA172 LEU173 LYS174 ASP175 ARG176 PRO177 LEU178 TYR179 ALA180 GLU181 LYS182 TRP183 ALA184 TYR185 PHE186 LYS187 MET188 GLU189 LEU190 ALA191 VAL192 ILE193 VAL194 VAL195 LYS196 THR197 LYS198 ASP199 GLU200 VAL201 LEU202 SER203 TYR204 PRO205 THR206 VAL207 GLU208 THR209 VAL210 GLN211 GLU212 ASP213 SER214 ILE215 CYS216 LYS217 LEU218 VAL219 TYR220 ALA221 PRO222 ALA223 ARG224 ASN225 VAL226 SER227 ASP228 ALA229 ILE230 ASN231 GLN232 LYS233 ALA234 GLN235 GLU236 LEU237 ALA238 ARG239 LYS240 ALA241 VAL242 ALA243 ALA244 PHE245 ASP246 GLY247 LYS248 GLY249 VAL250 PHE251 GLY252 VAL253 GLU254 MET255 PHE256 LEU257 LEU258 GLU259 ASP260 ASP261 SER262 ILE263 MET264 LEU265 CYS266 GLU267 ILE268 ALA269 SER270 ARG271 ILE272 HIS273 ASN274 SER275 GLY276 HIS277 TYR278 THR279 ILE280 GLU281 GLY282 CYS283 ALA284 LEU285 SER286 GLN287 PHE288 ASP289 ALA290 HIS291 LEU292 ARG293 ALA294 ILE295 LEU296 ASP297 LEU298 PRO299 ILE300 PRO301 ALA302 GLN303 SER304 LEU305 GLU306 ILE307 ARG308 GLN309 PRO310 SER311 ILE312 MET313 LEU314 ASN315 ILE316 ILE317 GLY318 GLY319 ALA320 ALA321 PRO322 ASP323 THR324 HIS325 LEU326 GLN327 ALA328 ALA329 GLU330 CYS331 ALA332 LEU333 SER334 ILE335 PRO336 ASN337 ALA338 SER339 ILE340 HIS341 LEU342 TYR343 SER344 LYS345 GLY346 ALA347 ALA348 LYS349 PRO350 GLY351 ARG352 LYS353 MET354 GLY355 HIS356 ILE357 THR358 VAL359 THR360 ALA361 PRO362 THR363 MET364 HIS365 GLU366 ALA367 GLU368 THR369 HIS370 ILE371 GLN372 PRO373 LEU374 ILE375 ASP376 VAL377 VAL378 ASP379 ARG380 ILE381 ARG382
Unit 4 MET1 TRP2 ASN3 SER4 ARG5 LYS6 VAL7 GLY8 VAL9 LEU10 GLY11 GLY12 GLY13 GLN14 LEU15 GLY16 ARG17 MET18 LEU19 VAL20 GLU21 SER22 ALA23 ASN24 ARG25 LEU26 ASN27 ILE28 GLN29 VAL30 ASN31 VAL32 LEU33 ASP34 ALA35 ASP36 ASN37 SER38 PRO39 ALA40 LYS41 GLN42 ILE43 SER44 ALA45 HIS46 ASP47 GLY48 HIS49 VAL50 THR51 GLY52 SER53 PHE54 LYS55 GLU56 ARG57 GLU58 ALA59 VAL60 ARG61 GLN62 LEU63 ALA64 LYS65 THR66 CYS67 ASP68 VAL69 VAL70 THR71 ALA72 GLU73 ILE74 VAL77 ASP78 THR79 TYR80 ALA81 LEU82 GLU83 GLU84 VAL85 ALA86 SER87 GLU88 VAL89 LYS90 ILE91 GLU92 PRO93 SER94 TRP95 GLN96 ALA97 ILE98 ARG99 THR100 ILE101 GLN102 ASN103 LYS104 PHE105 ASN106 GLN107 LYS108 GLU109 HIS110 LEU111 ARG112 LYS113 TYR114 GLY115 ILE116 PRO117 MET118 ALA119 GLU120 HIS121 ARG122 GLU123 LEU124 VAL125 GLU126 ASN127 THR128 PRO129 ALA130 GLU131 LEU132 ALA133 LYS134 VAL135 GLY136 GLU137 GLN138 LEU139 GLY140 TYR141 PRO142 LEU143 MET144 LEU145 LYS146 SER147 LYS148 THR149 MET150 GLY156 ASN157 PHE158 ARG159 VAL160 ASN161 SER162 GLN163 ASP164 ASP165 ILE166 PRO167 GLU168 ALA169 LEU170 GLU171 ALA172 LEU173 LYS174 ASP175 ARG176 PRO177 LEU178 TYR179 ALA180 GLU181 LYS182 TRP183 ALA184 TYR185 PHE186 LYS187 MET188 GLU189 LEU190 ALA191 VAL192 ILE193 VAL194 VAL195 LYS196 THR197 LYS198 ASP199 GLU200 VAL201 LEU202 SER203 TYR204 PRO205 THR206 VAL207 GLU208 THR209 VAL210 GLN211 GLU212 ASP213 SER214 ILE215 CYS216 LYS217 LEU218 VAL219 TYR220 ALA221 PRO222 ALA223 ARG224 ASN225 VAL226 SER227 ASP228 ALA229 ILE230 ASN231 GLN232 LYS233 ALA234 GLN235 GLU236 LEU237 ALA238 ARG239 LYS240 ALA241 VAL242 ALA243 ALA244 PHE245 ASP246 GLY247 LYS248 GLY249 VAL250 PHE251 GLY252 VAL253 GLU254 MET255 PHE256 LEU257 LEU258 GLU259 ASP260 ASP261 SER262 ILE263 MET264 LEU265 CYS266 GLU267 ILE268 ALA269 SER270 ARG271 ILE272 HIS273 ASN274 SER275 GLY276 HIS277 TYR278 THR279 ILE280 GLU281 GLY282 CYS283 ALA284 LEU285 SER286 GLN287 PHE288 ASP289 ALA290 HIS291 LEU292 ARG293 ALA294 ILE295 LEU296 ASP297 LEU298 PRO299 ILE300 PRO301 ALA302 GLN303 SER304 LEU305 GLU306 ILE307 ARG308 GLN309 PRO310 SER311 ILE312 MET313 LEU314 ASN315 ILE316 ILE317 GLY318 GLY319 ALA320 ALA321 PRO322 ASP323 THR324 HIS325 LEU326 GLN327 ALA328 ALA329 GLU330 CYS331 ALA332 LEU333 SER334 ILE335 PRO336 ASN337 ALA338 SER339 ILE340 HIS341 LEU342 TYR343 SER344 LYS345 GLY346 ALA347 ALA348 LYS349 PRO350 GLY351 ARG352 LYS353 MET354 GLY355 HIS356 ILE357 THR358 VAL359 THR360 ALA361 PRO362 THR363 MET364 HIS365 GLU366 ALA367 GLU368 THR369 HIS370 ILE371 GLN372 PRO373 LEU374 ILE375 ASP376 VAL377 VAL378 ASP379 ARG380
Ligands
Unit 5 NA384 NHE385 ADP400 MG401 AIR402
Unit 6 ADP400 MG401 AIR402
Unit 7 NHE384 ADP400 MG401 AIR402
Unit 8 ADP400 MG401 AIR402
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany