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Sequence, Chains, Asymmetric and Biological Units

Title PUF3 RNA BINDING DOMAIN BOUND TO COX17 RNA 3' UTR RECOGNITIO SITE A
Keywords PUF3, PUMILIO, RNA BINDING, MITOCHONDRIAL MRNA, MEMBRANE, MITOCHONDRION, MITOCHONDRION OUTER MEMBRANE, PHOSPHOPROTEIN BINDING, RNA BINDING PROTEIN - RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3K4E     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MRNA-BINDING PROTEIN PUF3  A 343 2771 0
2  RNA    B 10 210 0
3  Protein   MRNA-BINDING PROTEIN PUF3  C 343 2771 0
4  RNA    D 10 210 0
5  Protein   MRNA-BINDING PROTEIN PUF3  E 343 2771 0
6  RNA    F 10 210 0
7 Water     93 0 93
total       1152 8943 93
Proteins
Unit 1 SER515 PRO516 LEU517 LEU518 GLU519 GLN520 LEU521 ARG522 ASN523 SER524 ASN533 MET534 SER535 LEU536 LYS537 ASP538 ILE539 PHE540 GLY541 HIS542 SER543 LEU544 GLU545 PHE546 CYS547 LYS548 ASP549 GLN550 HIS551 GLY552 SER553 ARG554 PHE555 ILE556 GLN557 ARG558 GLU559 LEU560 ALA561 THR562 SER563 PRO564 ALA565 SER566 GLU567 LYS568 GLU569 VAL570 ILE571 PHE572 ASN573 GLU574 ILE575 ARG576 ASP577 ASP578 ALA579 ILE580 GLU581 LEU582 SER583 ASN584 ASP585 VAL586 PHE587 GLY588 ASN589 TYR590 VAL591 ILE592 GLN593 LYS594 PHE595 PHE596 GLU597 PHE598 GLY599 SER600 LYS601 ILE602 GLN603 LYS604 ASN605 THR606 LEU607 VAL608 ASP609 GLN610 PHE611 LYS612 GLY613 ASN614 MET615 LYS616 GLN617 LEU618 SER619 LEU620 GLN621 MET622 TYR623 ALA624 CYS625 ARG626 VAL627 ILE628 GLN629 LYS630 ALA631 LEU632 GLU633 TYR634 ILE635 ASP636 SER637 ASN638 GLN639 ARG640 ILE641 GLU642 LEU643 VAL644 LEU645 GLU646 LEU647 SER648 ASP649 SER650 VAL651 LEU652 GLN653 MET654 ILE655 LYS656 ASP657 GLN658 ASN659 GLY660 ASN661 HIS662 VAL663 ILE664 GLN665 LYS666 ALA667 ILE668 GLU669 THR670 ILE671 PRO672 ILE673 GLU674 LYS675 LEU676 PRO677 PHE678 ILE679 LEU680 SER681 SER682 LEU683 THR684 GLY685 HIS686 ILE687 TYR688 HIS689 LEU690 SER691 THR692 HIS693 SER694 TYR695 GLY696 CYS697 ARG698 VAL699 ILE700 GLN701 ARG702 LEU703 LEU704 GLU705 PHE706 GLY707 SER708 SER709 GLU710 ASP711 GLN712 GLU713 SER714 ILE715 LEU716 ASN717 GLU718 LEU719 LYS720 ASP721 PHE722 ILE723 PRO724 TYR725 LEU726 ILE727 GLN728 ASP729 GLN730 TYR731 GLY732 ASN733 TYR734 VAL735 ILE736 GLN737 TYR738 VAL739 LEU740 GLN741 GLN742 ASP743 GLN744 PHE745 THR746 ASN747 LYS748 GLU749 MET750 VAL751 ASP752 ILE753 LYS754 GLN755 GLU756 ILE757 ILE758 GLU759 THR760 VAL761 ALA762 ASN763 ASN764 VAL765 VAL766 GLU767 TYR768 SER769 LYS770 HIS771 LYS772 PHE773 ALA774 SER775 ASN776 VAL777 VAL778 GLU779 LYS780 SER781 ILE782 LEU783 TYR784 GLY785 SER786 LYS787 ASN788 GLN789 LYS790 ASP791 LEU792 ILE793 ILE794 SER795 LYS796 ILE797 LEU798 PRO799 ARG800 ASP801 LYS802 ASN803 HIS804 ALA805 LEU806 ASN807 LEU808 GLU809 ASP810 ASP811 SER812 PRO813 MET814 ILE815 LEU816 MET817 ILE818 LYS819 ASP820 GLN821 PHE822 ALA823 ASN824 TYR825 VAL826 ILE827 GLN828 LYS829 LEU830 VAL831 ASN832 VAL833 SER834 GLU835 GLY836 GLU837 GLY838 LYS839 LYS840 LEU841 ILE842 VAL843 ILE844 ALA845 ILE846 ARG847 ALA848 TYR849 LEU850 ASP851 LYS852 LEU853 LEU864 ALA865 SER866 VAL867 GLU868 LYS869 LEU870 ALA871 ALA872 LEU873 VAL874 GLU875
Unit 3 SER515 PRO516 LEU517 LEU518 GLU519 GLN520 LEU521 ARG522 ASN523 SER524 ASN533 MET534 SER535 LEU536 LYS537 ASP538 ILE539 PHE540 GLY541 HIS542 SER543 LEU544 GLU545 PHE546 CYS547 LYS548 ASP549 GLN550 HIS551 GLY552 SER553 ARG554 PHE555 ILE556 GLN557 ARG558 GLU559 LEU560 ALA561 THR562 SER563 PRO564 ALA565 SER566 GLU567 LYS568 GLU569 VAL570 ILE571 PHE572 ASN573 GLU574 ILE575 ARG576 ASP577 ASP578 ALA579 ILE580 GLU581 LEU582 SER583 ASN584 ASP585 VAL586 PHE587 GLY588 ASN589 TYR590 VAL591 ILE592 GLN593 LYS594 PHE595 PHE596 GLU597 PHE598 GLY599 SER600 LYS601 ILE602 GLN603 LYS604 ASN605 THR606 LEU607 VAL608 ASP609 GLN610 PHE611 LYS612 GLY613 ASN614 MET615 LYS616 GLN617 LEU618 SER619 LEU620 GLN621 MET622 TYR623 ALA624 CYS625 ARG626 VAL627 ILE628 GLN629 LYS630 ALA631 LEU632 GLU633 TYR634 ILE635 ASP636 SER637 ASN638 GLN639 ARG640 ILE641 GLU642 LEU643 VAL644 LEU645 GLU646 LEU647 SER648 ASP649 SER650 VAL651 LEU652 GLN653 MET654 ILE655 LYS656 ASP657 GLN658 ASN659 GLY660 ASN661 HIS662 VAL663 ILE664 GLN665 LYS666 ALA667 ILE668 GLU669 THR670 ILE671 PRO672 ILE673 GLU674 LYS675 LEU676 PRO677 PHE678 ILE679 LEU680 SER681 SER682 LEU683 THR684 GLY685 HIS686 ILE687 TYR688 HIS689 LEU690 SER691 THR692 HIS693 SER694 TYR695 GLY696 CYS697 ARG698 VAL699 ILE700 GLN701 ARG702 LEU703 LEU704 GLU705 PHE706 GLY707 SER708 SER709 GLU710 ASP711 GLN712 GLU713 SER714 ILE715 LEU716 ASN717 GLU718 LEU719 LYS720 ASP721 PHE722 ILE723 PRO724 TYR725 LEU726 ILE727 GLN728 ASP729 GLN730 TYR731 GLY732 ASN733 TYR734 VAL735 ILE736 GLN737 TYR738 VAL739 LEU740 GLN741 GLN742 ASP743 GLN744 PHE745 THR746 ASN747 LYS748 GLU749 MET750 VAL751 ASP752 ILE753 LYS754 GLN755 GLU756 ILE757 ILE758 GLU759 THR760 VAL761 ALA762 ASN763 ASN764 VAL765 VAL766 GLU767 TYR768 SER769 LYS770 HIS771 LYS772 PHE773 ALA774 SER775 ASN776 VAL777 VAL778 GLU779 LYS780 SER781 ILE782 LEU783 TYR784 GLY785 SER786 LYS787 ASN788 GLN789 LYS790 ASP791 LEU792 ILE793 ILE794 SER795 LYS796 ILE797 LEU798 PRO799 ARG800 ASP801 LYS802 ASN803 HIS804 ALA805 LEU806 ASN807 LEU808 GLU809 ASP810 ASP811 SER812 PRO813 MET814 ILE815 LEU816 MET817 ILE818 LYS819 ASP820 GLN821 PHE822 ALA823 ASN824 TYR825 VAL826 ILE827 GLN828 LYS829 LEU830 VAL831 ASN832 VAL833 SER834 GLU835 GLY836 GLU837 GLY838 LYS839 LYS840 LEU841 ILE842 VAL843 ILE844 ALA845 ILE846 ARG847 ALA848 TYR849 LEU850 ASP851 LYS852 LEU853 LEU864 ALA865 SER866 VAL867 GLU868 LYS869 LEU870 ALA871 ALA872 LEU873 VAL874 GLU875
Unit 5 SER515 PRO516 LEU517 LEU518 GLU519 GLN520 LEU521 ARG522 ASN523 SER524 ASN533 MET534 SER535 LEU536 LYS537 ASP538 ILE539 PHE540 GLY541 HIS542 SER543 LEU544 GLU545 PHE546 CYS547 LYS548 ASP549 GLN550 HIS551 GLY552 SER553 ARG554 PHE555 ILE556 GLN557 ARG558 GLU559 LEU560 ALA561 THR562 SER563 PRO564 ALA565 SER566 GLU567 LYS568 GLU569 VAL570 ILE571 PHE572 ASN573 GLU574 ILE575 ARG576 ASP577 ASP578 ALA579 ILE580 GLU581 LEU582 SER583 ASN584 ASP585 VAL586 PHE587 GLY588 ASN589 TYR590 VAL591 ILE592 GLN593 LYS594 PHE595 PHE596 GLU597 PHE598 GLY599 SER600 LYS601 ILE602 GLN603 LYS604 ASN605 THR606 LEU607 VAL608 ASP609 GLN610 PHE611 LYS612 GLY613 ASN614 MET615 LYS616 GLN617 LEU618 SER619 LEU620 GLN621 MET622 TYR623 ALA624 CYS625 ARG626 VAL627 ILE628 GLN629 LYS630 ALA631 LEU632 GLU633 TYR634 ILE635 ASP636 SER637 ASN638 GLN639 ARG640 ILE641 GLU642 LEU643 VAL644 LEU645 GLU646 LEU647 SER648 ASP649 SER650 VAL651 LEU652 GLN653 MET654 ILE655 LYS656 ASP657 GLN658 ASN659 GLY660 ASN661 HIS662 VAL663 ILE664 GLN665 LYS666 ALA667 ILE668 GLU669 THR670 ILE671 PRO672 ILE673 GLU674 LYS675 LEU676 PRO677 PHE678 ILE679 LEU680 SER681 SER682 LEU683 THR684 GLY685 HIS686 ILE687 TYR688 HIS689 LEU690 SER691 THR692 HIS693 SER694 TYR695 GLY696 CYS697 ARG698 VAL699 ILE700 GLN701 ARG702 LEU703 LEU704 GLU705 PHE706 GLY707 SER708 SER709 GLU710 ASP711 GLN712 GLU713 SER714 ILE715 LEU716 ASN717 GLU718 LEU719 LYS720 ASP721 PHE722 ILE723 PRO724 TYR725 LEU726 ILE727 GLN728 ASP729 GLN730 TYR731 GLY732 ASN733 TYR734 VAL735 ILE736 GLN737 TYR738 VAL739 LEU740 GLN741 GLN742 ASP743 GLN744 PHE745 THR746 ASN747 LYS748 GLU749 MET750 VAL751 ASP752 ILE753 LYS754 GLN755 GLU756 ILE757 ILE758 GLU759 THR760 VAL761 ALA762 ASN763 ASN764 VAL765 VAL766 GLU767 TYR768 SER769 LYS770 HIS771 LYS772 PHE773 ALA774 SER775 ASN776 VAL777 VAL778 GLU779 LYS780 SER781 ILE782 LEU783 TYR784 GLY785 SER786 LYS787 ASN788 GLN789 LYS790 ASP791 LEU792 ILE793 ILE794 SER795 LYS796 ILE797 LEU798 PRO799 ARG800 ASP801 LYS802 ASN803 HIS804 ALA805 LEU806 ASN807 LEU808 GLU809 ASP810 ASP811 SER812 PRO813 MET814 ILE815 LEU816 MET817 ILE818 LYS819 ASP820 GLN821 PHE822 ALA823 ASN824 TYR825 VAL826 ILE827 GLN828 LYS829 LEU830 VAL831 ASN832 VAL833 SER834 GLU835 GLY836 GLU837 GLY838 LYS839 LYS840 LEU841 ILE842 VAL843 ILE844 ALA845 ILE846 ARG847 ALA848 TYR849 LEU850 ASP851 LYS852 LEU853 LEU864 ALA865 SER866 VAL867 GLU868 LYS869 LEU870 ALA871 ALA872 LEU873 VAL874 GLU875
Nucleic acids
Unit 2 C1 U2 U3 G4 U5 A6 U7 A8 U9 A10
Unit 4 C1 U2 U3 G4 U5 A6 U7 A8 U9 A10
Unit 6 C1 U2 U3 G4 U5 A6 U7 A8 U9 A10
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany