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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE E. COLI THIM RIBOSWITCH IN COMPLEX THIAMINE PYROPHOSPHATE AND THE U1A CRYSTALLIZATION MODULE
Keywords RIBOSWITCH, RNA, THI-BOX, THIM, U1A PROTEIN, ACETYLATION, MR PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, RNA-RNA BINDIN COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3K0J     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  A 92 740 0
2  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  B 92 725 0
3  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  C 86 672 0
4  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  D 82 638 0
5  RNA    E 87 1829 0
6  RNA    F 87 1813 0
7  Ligand   RNA (87-MER)  E 7 0 32
8  Ligand   RNA (87-MER)  F 3 0 28
total       536 6417 60
Proteins
Unit 1 THR206 ARG207 PRO208 ASN209 HIS210 THR211 ILE212 TYR213 ILE214 ASN215 ASN216 LEU217 ASN218 GLU219 LYS220 ILE221 LYS222 LYS223 ASP224 GLU225 LEU226 LYS227 LYS228 SER229 LEU230 HIS231 ALA232 ILE233 PHE234 SER235 ARG236 PHE237 GLY238 GLN239 ILE240 LEU241 ASP242 ILE243 LEU244 VAL245 SER246 ARG247 SER248 LEU249 LYS250 MET251 ARG252 GLY253 GLN254 ALA255 PHE256 VAL257 ILE258 PHE259 LYS260 GLU261 VAL262 SER263 SER264 ALA265 THR266 ASN267 ALA268 LEU269 ARG270 SER271 MET272 GLN273 GLY274 PHE275 PRO276 PHE277 TYR278 ASP279 LYS280 PRO281 MET282 ARG283 ILE284 GLN285 TYR286 ALA287 LYS288 THR289 ASP290 SER291 ASP292 ILE293 ILE294 ALA295 LYS296 MET297
Unit 2 THR306 ARG307 PRO308 ASN309 HIS310 THR311 ILE312 TYR313 ILE314 ASN315 ASN316 LEU317 ASN318 GLU319 LYS320 ILE321 LYS322 LYS323 ASP324 GLU325 LEU326 LYS327 LYS328 SER329 LEU330 HIS331 ALA332 ILE333 PHE334 SER335 ARG336 PHE337 GLY338 GLN339 ILE340 LEU341 ASP342 ILE343 LEU344 VAL345 SER346 ARG347 SER348 LEU349 LYS350 MET351 ARG352 GLY353 GLN354 ALA355 PHE356 VAL357 ILE358 PHE359 LYS360 GLU361 VAL362 SER363 SER364 ALA365 THR366 ASN367 ALA368 LEU369 ARG370 SER371 MET372 GLN373 GLY374 PHE375 PRO376 PHE377 TYR378 ASP379 LYS380 PRO381 MET382 ARG383 ILE384 GLN385 TYR386 ALA387 LYS388 THR389 ASP390 SER391 ASP392 ILE393 ILE394 ALA395 LYS396 MET397
Unit 3 PRO404 GLU405 THR406 ARG407 PRO408 ASN409 HIS410 THR411 ILE412 TYR413 ILE414 ASN415 ASN416 LEU417 ASN418 GLU419 LYS420 ILE421 LYS422 LYS423 ASP424 GLU425 LEU426 LYS427 LYS428 SER429 LEU430 HIS431 ALA432 ILE433 PHE434 SER435 ARG436 PHE437 GLY438 GLN439 ILE440 LEU441 ASP442 ILE443 LEU444 VAL445 SER446 ARG447 SER448 LEU449 LYS450 MET451 ARG452 GLY453 GLN454 ALA455 PHE456 VAL457 ILE458 PHE459 LYS460 GLU461 VAL462 SER463 SER464 ALA465 THR466 ASN467 ALA468 LEU469 ARG470 SER471 MET472 GLN473 GLY474 PHE475 PRO476 PHE477 TYR478 ASP479 LYS480 PRO481 MET482 ARG483 ILE484 GLN485 TYR486 ALA487 LYS488 THR489
Unit 4 THR506 ARG507 PRO508 ASN509 HIS510 THR511 ILE512 TYR513 ILE514 ASN515 ASN516 LEU517 ASN518 GLU519 LYS520 ILE521 LYS522 LYS523 ASP524 GLU525 LEU526 LYS527 LYS528 SER529 LEU530 HIS531 ALA532 ILE533 PHE534 SER535 ARG536 PHE537 GLY538 GLN539 ILE540 LEU541 ASP542 ILE543 LEU544 VAL545 SER546 ARG547 SER548 MET551 ARG552 GLY553 GLN554 ALA555 PHE556 VAL557 ILE558 PHE559 LYS560 GLU561 VAL562 SER563 SER564 ALA565 THR566 ASN567 ALA568 LEU569 ARG570 SER571 MET572 GLN573 GLY574 PHE575 PRO576 PHE577 TYR578 ASP579 LYS580 PRO581 MET582 ARG583 ILE584 GLN585 TYR586 ALA587 LYS588 THR589
Nucleic acids
Unit 5 G4 C5 G6 A7 C8 U9 C10 G11 G12 G13 G14 U15 G16 C17 C18 C19 U20 C21 C22 A23 U24 U25 G26 C27 A28 C29 U30 C31 C32 G33 G34 A35 G36 G37 C38 U39 G40 A41 G42 A43 A44 A45 U46 A47 C48 C49 C50 G51 U52 A53 U54 C55 A56 C57 C58 U59 G60 A61 U62 C63 U64 G65 G66 A67 U68 A69 A70 U71 G72 C73 C74 A75 G76 C77 G78 U79 A80 G81 G82 G83 A84 A85 G86 U87 C88 G89 C90
Unit 6 G104 C105 G106 A107 C108 U109 C110 G111 G112 G113 G114 U115 G116 C117 C118 C119 U120 C121 C122 A123 U124 U125 G126 C127 A128 C129 U130 C131 C132 G133 G134 A135 G136 G137 C138 U139 G140 A141 G142 A143 A144 A145 U146 A147 C148 C149 C150 G151 U152 A153 U154 C155 A156 C157 C158 U159 G160 A161 U162 C163 U164 G165 G166 A167 U168 A169 A170 U171 G172 C173 C174 A175 G176 C177 G178 U179 A180 G181 G182 G183 A184 A185 G186 U187 C188 G189 C190
Ligands
Unit 7 TPP601 MG701 MG702 MG704 MG705 MG706 MG707
Unit 8 TPP602 MG703 MG708
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany