Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CHIMERIC PDE5/PDE6 CATALYTIC DOMAIN COM WITH SILDENAFIL
Keywords MOSTLY ALPHA, ALLOSTERIC ENZYME, CGMP, CGMP-BINDING, HYDROLA MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, PHOSPHOPROTEI MEMBRANE, LIPOPROTEIN, MEMBRANE, METHYLATION, PRENYLATION, TRANSDUCTION, VISION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3JWQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATA DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE S ALPHA CHIMERA  A 324 2638 0
2  Protein   CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATA DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE S ALPHA CHIMERA  B 324 2638 0
3  Protein   CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATA DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE S ALPHA CHIMERA  C 327 2665 0
4  Protein   CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATA DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE S ALPHA CHIMERA  D 323 2629 0
5  Ligand   CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATA DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE S ALPHA CHIMERA  A 3 0 35
6  Ligand   CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATA DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE S ALPHA CHIMERA  B 3 0 35
7  Ligand   CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATA DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE S ALPHA CHIMERA  C 3 0 35
8  Ligand   CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATA DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE S ALPHA CHIMERA  D 3 0 35
9 Water     13 0 13
total       1323 10570 153
Proteins
Unit 1 GLU536 THR537 ARG538 GLU539 LEU540 GLN541 SER542 LEU543 ALA544 ALA545 ALA546 VAL547 VAL548 PRO549 SER550 ALA551 GLN552 THR553 LEU554 LYS555 ILE556 THR557 ASP558 PHE559 SER560 PHE561 SER562 ASP563 PHE564 GLU565 LEU566 SER567 ASP568 LEU569 GLU570 THR571 ALA572 LEU573 CYS574 THR575 ILE576 ARG577 MET578 PHE579 THR580 ASP581 LEU582 ASN583 LEU584 VAL585 GLN586 ASN587 PHE588 GLN589 MET590 LYS591 HIS592 GLU593 VAL594 LEU595 CYS596 ARG597 TRP598 ILE599 LEU600 SER601 VAL602 LYS603 LYS604 ASN605 TYR606 ARG607 LYS608 ASN609 VAL610 ALA611 TYR612 HIS613 ASN614 TRP615 ARG616 HIS617 ALA618 PHE619 ASN620 THR621 ALA622 GLN623 CYS624 MET625 PHE626 ALA627 ALA628 LEU629 LYS630 ALA631 GLY632 LYS633 ILE634 GLN635 ASN636 LYS637 LEU638 THR639 ASP640 LEU641 GLU642 ILE643 LEU644 ALA645 LEU646 LEU647 ILE648 ALA649 ALA650 LEU651 SER652 HIS653 ASP654 LEU655 ASP656 HIS657 ARG658 GLY659 VAL660 ASN661 ASN662 SER663 TYR664 ILE665 GLN666 ARG667 SER668 GLU669 HIS670 PRO671 LEU672 ALA673 GLN674 LEU675 TYR676 CYS677 HIS678 SER679 ILE680 MET681 GLU682 HIS683 HIS684 HIS685 PHE686 ASP687 GLN688 CYS689 LEU690 MET691 ILE692 LEU693 ASN694 SER695 PRO696 GLY697 ASN698 GLN699 ILE700 LEU701 SER702 GLY703 LEU704 SER705 ILE706 GLU707 GLU708 TYR709 LYS710 THR711 THR712 LEU713 LYS714 ILE715 ILE716 LYS717 GLN718 ALA719 ILE720 LEU721 ALA722 THR723 ASP724 LEU725 ALA726 LEU727 TYR728 ILE729 LYS730 ARG731 ARG732 GLY733 GLU734 PHE735 PHE736 GLU737 LEU738 ILE739 ARG740 LYS741 ASN742 GLN743 PHE744 ASN745 LEU746 GLU747 ASP748 PRO749 HIS750 GLN751 LYS752 GLU753 LEU754 PHE755 LEU756 ALA757 MET758 LEU759 MET760 THR761 ALA762 CYS763 ASP764 LEU765 SER766 ALA767 ILE768 THR769 LYS770 PRO771 TRP772 PRO773 ILE774 GLN775 GLN776 ARG777 ILE778 ALA779 GLU780 LEU781 VAL782 ALA783 THR784 GLU785 PHE786 TRP787 GLU788 GLN789 GLY790 ASP791 LEU792 GLU793 ARG794 THR795 VAL796 LEU797 GLN798 GLN799 GLN800 PRO801 ILE802 PRO803 MET804 MET805 ASP806 ARG807 ASN808 LYS809 ARG810 ASP811 GLU812 LEU813 PRO814 LYS815 LEU816 GLN817 VAL818 GLY819 PHE820 ILE821 ASP822 PHE823 VAL824 CYS825 THR826 GLN827 LEU828 TYR829 GLU830 ALA831 LEU832 THR833 HIS834 VAL835 SER836 GLU837 ASP838 CYS839 PHE840 PRO841 LEU842 LEU843 ASP844 GLY845 CYS846 ARG847 LYS848 ASN849 ARG850 GLN851 LYS852 TRP853 GLN854 ALA855 LEU856 ALA857 GLU858 GLN859
Unit 2 GLU536 THR537 ARG538 GLU539 LEU540 GLN541 SER542 LEU543 ALA544 ALA545 ALA546 VAL547 VAL548 PRO549 SER550 ALA551 GLN552 THR553 LEU554 LYS555 ILE556 THR557 ASP558 PHE559 SER560 PHE561 SER562 ASP563 PHE564 GLU565 LEU566 SER567 ASP568 LEU569 GLU570 THR571 ALA572 LEU573 CYS574 THR575 ILE576 ARG577 MET578 PHE579 THR580 ASP581 LEU582 ASN583 LEU584 VAL585 GLN586 ASN587 PHE588 GLN589 MET590 LYS591 HIS592 GLU593 VAL594 LEU595 CYS596 ARG597 TRP598 ILE599 LEU600 SER601 VAL602 LYS603 LYS604 ASN605 TYR606 ARG607 LYS608 ASN609 VAL610 ALA611 TYR612 HIS613 ASN614 TRP615 ARG616 HIS617 ALA618 PHE619 ASN620 THR621 ALA622 GLN623 CYS624 MET625 PHE626 ALA627 ALA628 LEU629 LYS630 ALA631 GLY632 LYS633 ILE634 GLN635 ASN636 LYS637 LEU638 THR639 ASP640 LEU641 GLU642 ILE643 LEU644 ALA645 LEU646 LEU647 ILE648 ALA649 ALA650 LEU651 SER652 HIS653 ASP654 LEU655 ASP656 HIS657 ARG658 GLY659 VAL660 ASN661 ASN662 SER663 TYR664 ILE665 GLN666 ARG667 SER668 GLU669 HIS670 PRO671 LEU672 ALA673 GLN674 LEU675 TYR676 CYS677 HIS678 SER679 ILE680 MET681 GLU682 HIS683 HIS684 HIS685 PHE686 ASP687 GLN688 CYS689 LEU690 MET691 ILE692 LEU693 ASN694 SER695 PRO696 GLY697 ASN698 GLN699 ILE700 LEU701 SER702 GLY703 LEU704 SER705 ILE706 GLU707 GLU708 TYR709 LYS710 THR711 THR712 LEU713 LYS714 ILE715 ILE716 LYS717 GLN718 ALA719 ILE720 LEU721 ALA722 THR723 ASP724 LEU725 ALA726 LEU727 TYR728 ILE729 LYS730 ARG731 ARG732 GLY733 GLU734 PHE735 PHE736 GLU737 LEU738 ILE739 ARG740 LYS741 ASN742 GLN743 PHE744 ASN745 LEU746 GLU747 ASP748 PRO749 HIS750 GLN751 LYS752 GLU753 LEU754 PHE755 LEU756 ALA757 MET758 LEU759 MET760 THR761 ALA762 CYS763 ASP764 LEU765 SER766 ALA767 ILE768 THR769 LYS770 PRO771 TRP772 PRO773 ILE774 GLN775 GLN776 ARG777 ILE778 ALA779 GLU780 LEU781 VAL782 ALA783 THR784 GLU785 PHE786 TRP787 GLU788 GLN789 GLY790 ASP791 LEU792 GLU793 ARG794 THR795 VAL796 LEU797 GLN798 GLN799 GLN800 PRO801 ILE802 PRO803 MET804 MET805 ASP806 ARG807 ASN808 LYS809 ARG810 ASP811 GLU812 LEU813 PRO814 LYS815 LEU816 GLN817 VAL818 GLY819 PHE820 ILE821 ASP822 PHE823 VAL824 CYS825 THR826 GLN827 LEU828 TYR829 GLU830 ALA831 LEU832 THR833 HIS834 VAL835 SER836 GLU837 ASP838 CYS839 PHE840 PRO841 LEU842 LEU843 ASP844 GLY845 CYS846 ARG847 LYS848 ASN849 ARG850 GLN851 LYS852 TRP853 GLN854 ALA855 LEU856 ALA857 GLU858 GLN859
Unit 3 HIS533 MET534 GLU535 GLU536 THR537 ARG538 GLU539 LEU540 GLN541 SER542 LEU543 ALA544 ALA545 ALA546 VAL547 VAL548 PRO549 SER550 ALA551 GLN552 THR553 LEU554 LYS555 ILE556 THR557 ASP558 PHE559 SER560 PHE561 SER562 ASP563 PHE564 GLU565 LEU566 SER567 ASP568 LEU569 GLU570 THR571 ALA572 LEU573 CYS574 THR575 ILE576 ARG577 MET578 PHE579 THR580 ASP581 LEU582 ASN583 LEU584 VAL585 GLN586 ASN587 PHE588 GLN589 MET590 LYS591 HIS592 GLU593 VAL594 LEU595 CYS596 ARG597 TRP598 ILE599 LEU600 SER601 VAL602 LYS603 LYS604 ASN605 TYR606 ARG607 LYS608 ASN609 VAL610 ALA611 TYR612 HIS613 ASN614 TRP615 ARG616 HIS617 ALA618 PHE619 ASN620 THR621 ALA622 GLN623 CYS624 MET625 PHE626 ALA627 ALA628 LEU629 LYS630 ALA631 GLY632 LYS633 ILE634 GLN635 ASN636 LYS637 LEU638 THR639 ASP640 LEU641 GLU642 ILE643 LEU644 ALA645 LEU646 LEU647 ILE648 ALA649 ALA650 LEU651 SER652 HIS653 ASP654 LEU655 ASP656 HIS657 ARG658 GLY659 VAL660 ASN661 ASN662 SER663 TYR664 ILE665 GLN666 ARG667 SER668 GLU669 HIS670 PRO671 LEU672 ALA673 GLN674 LEU675 TYR676 CYS677 HIS678 SER679 ILE680 MET681 GLU682 HIS683 HIS684 HIS685 PHE686 ASP687 GLN688 CYS689 LEU690 MET691 ILE692 LEU693 ASN694 SER695 PRO696 GLY697 ASN698 GLN699 ILE700 LEU701 SER702 GLY703 LEU704 SER705 ILE706 GLU707 GLU708 TYR709 LYS710 THR711 THR712 LEU713 LYS714 ILE715 ILE716 LYS717 GLN718 ALA719 ILE720 LEU721 ALA722 THR723 ASP724 LEU725 ALA726 LEU727 TYR728 ILE729 LYS730 ARG731 ARG732 GLY733 GLU734 PHE735 PHE736 GLU737 LEU738 ILE739 ARG740 LYS741 ASN742 GLN743 PHE744 ASN745 LEU746 GLU747 ASP748 PRO749 HIS750 GLN751 LYS752 GLU753 LEU754 PHE755 LEU756 ALA757 MET758 LEU759 MET760 THR761 ALA762 CYS763 ASP764 LEU765 SER766 ALA767 ILE768 THR769 LYS770 PRO771 TRP772 PRO773 ILE774 GLN775 GLN776 ARG777 ILE778 ALA779 GLU780 LEU781 VAL782 ALA783 THR784 GLU785 PHE786 TRP787 GLU788 GLN789 GLY790 ASP791 LEU792 GLU793 ARG794 THR795 VAL796 LEU797 GLN798 GLN799 GLN800 PRO801 ILE802 PRO803 MET804 MET805 ASP806 ARG807 ASN808 LYS809 ARG810 ASP811 GLU812 LEU813 PRO814 LYS815 LEU816 GLN817 VAL818 GLY819 PHE820 ILE821 ASP822 PHE823 VAL824 CYS825 THR826 GLN827 LEU828 TYR829 GLU830 ALA831 LEU832 THR833 HIS834 VAL835 SER836 GLU837 ASP838 CYS839 PHE840 PRO841 LEU842 LEU843 ASP844 GLY845 CYS846 ARG847 LYS848 ASN849 ARG850 GLN851 LYS852 TRP853 GLN854 ALA855 LEU856 ALA857 GLU858 GLN859
Unit 4 THR537 ARG538 GLU539 LEU540 GLN541 SER542 LEU543 ALA544 ALA545 ALA546 VAL547 VAL548 PRO549 SER550 ALA551 GLN552 THR553 LEU554 LYS555 ILE556 THR557 ASP558 PHE559 SER560 PHE561 SER562 ASP563 PHE564 GLU565 LEU566 SER567 ASP568 LEU569 GLU570 THR571 ALA572 LEU573 CYS574 THR575 ILE576 ARG577 MET578 PHE579 THR580 ASP581 LEU582 ASN583 LEU584 VAL585 GLN586 ASN587 PHE588 GLN589 MET590 LYS591 HIS592 GLU593 VAL594 LEU595 CYS596 ARG597 TRP598 ILE599 LEU600 SER601 VAL602 LYS603 LYS604 ASN605 TYR606 ARG607 LYS608 ASN609 VAL610 ALA611 TYR612 HIS613 ASN614 TRP615 ARG616 HIS617 ALA618 PHE619 ASN620 THR621 ALA622 GLN623 CYS624 MET625 PHE626 ALA627 ALA628 LEU629 LYS630 ALA631 GLY632 LYS633 ILE634 GLN635 ASN636 LYS637 LEU638 THR639 ASP640 LEU641 GLU642 ILE643 LEU644 ALA645 LEU646 LEU647 ILE648 ALA649 ALA650 LEU651 SER652 HIS653 ASP654 LEU655 ASP656 HIS657 ARG658 GLY659 VAL660 ASN661 ASN662 SER663 TYR664 ILE665 GLN666 ARG667 SER668 GLU669 HIS670 PRO671 LEU672 ALA673 GLN674 LEU675 TYR676 CYS677 HIS678 SER679 ILE680 MET681 GLU682 HIS683 HIS684 HIS685 PHE686 ASP687 GLN688 CYS689 LEU690 MET691 ILE692 LEU693 ASN694 SER695 PRO696 GLY697 ASN698 GLN699 ILE700 LEU701 SER702 GLY703 LEU704 SER705 ILE706 GLU707 GLU708 TYR709 LYS710 THR711 THR712 LEU713 LYS714 ILE715 ILE716 LYS717 GLN718 ALA719 ILE720 LEU721 ALA722 THR723 ASP724 LEU725 ALA726 LEU727 TYR728 ILE729 LYS730 ARG731 ARG732 GLY733 GLU734 PHE735 PHE736 GLU737 LEU738 ILE739 ARG740 LYS741 ASN742 GLN743 PHE744 ASN745 LEU746 GLU747 ASP748 PRO749 HIS750 GLN751 LYS752 GLU753 LEU754 PHE755 LEU756 ALA757 MET758 LEU759 MET760 THR761 ALA762 CYS763 ASP764 LEU765 SER766 ALA767 ILE768 THR769 LYS770 PRO771 TRP772 PRO773 ILE774 GLN775 GLN776 ARG777 ILE778 ALA779 GLU780 LEU781 VAL782 ALA783 THR784 GLU785 PHE786 TRP787 GLU788 GLN789 GLY790 ASP791 LEU792 GLU793 ARG794 THR795 VAL796 LEU797 GLN798 GLN799 GLN800 PRO801 ILE802 PRO803 MET804 MET805 ASP806 ARG807 ASN808 LYS809 ARG810 ASP811 GLU812 LEU813 PRO814 LYS815 LEU816 GLN817 VAL818 GLY819 PHE820 ILE821 ASP822 PHE823 VAL824 CYS825 THR826 GLN827 LEU828 TYR829 GLU830 ALA831 LEU832 THR833 HIS834 VAL835 SER836 GLU837 ASP838 CYS839 PHE840 PRO841 LEU842 LEU843 ASP844 GLY845 CYS846 ARG847 LYS848 ASN849 ARG850 GLN851 LYS852 TRP853 GLN854 ALA855 LEU856 ALA857 GLU858 GLN859
Ligands
Unit 5 ZN899 MG900 VIA901
Unit 6 ZN899 MG900 VIA901
Unit 7 ZN899 MG900 VIA901
Unit 8 ZN899 MG900 VIA901
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany