3JVZ - Sequence, Chains, Asymmetric and Biological Units

• Title: E2~UBIQUITIN-HECT
• Keywords: UBIQUITIN, HECT, E3, UBIQUITIN LIGASE, UBCH5B, NEDD4L, NEDD4 LIGASE, UBL CONJUGATION PATHWAY, HOST-VIRUS INTERACTION, LI SIGNALING PROTEIN COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3JVZ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	UBIQUITIN-CONJUGATING ENZYME E2 D2	A	146	1170	0
2	Protein	UBIQUITIN-CONJUGATING ENZYME E2 D2	B	146	1170	0
3	Protein	E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE	C	377	3148	0
4	Protein	E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE	D	374	3124	0
5	Protein	UBIQUITIN	X	76	601	0
6	Protein	UBIQUITIN	Y	76	601	0
total				1195	9814	0

Proteins

Unit 1	ALA 2 SER 3 LYS 4 ARG 5 ILE 6 HIS 7 LYS 8 GLU 9 LEU 10 ASN 11 ASP 12 LEU 13 ALA 14 ARG 15 ASP 16 PRO 17 PRO 18 ALA 19 GLN 20 CYS 21 SER 22 ALA 23 GLY 24 PRO 25 VAL 26 GLY 27 ASP 28 ASP 29 MET 30 PHE 31 HIS 32 TRP 33 GLN 34 ALA 35 THR 36 ILE 37 MET 38 GLY 39 PRO 40 ASN 41 ASP 42 SER 43 PRO 44 TYR 45 GLN 46 GLY 47 GLY 48 VAL 49 PHE 50 PHE 51 LEU 52 THR 53 ILE 54 HIS 55 PHE 56 PRO 57 THR 58 ASP 59 TYR 60 PRO 61 PHE 62 LYS 63 PRO 64 PRO 65 LYS 66 VAL 67 ALA 68 PHE 69 THR 70 THR 71 ARG 72 ILE 73 TYR 74 HIS 75 PRO 76 ASN 77 ILE 78 ASN 79 SER 80 ASN 81 GLY 82 SER 83 ILE 84 SER 85 LEU 86 ASP 87 ILE 88 LEU 89 ARG 90 SER 91 GLN 92 TRP 93 SER 94 PRO 95 ALA 96 LEU 97 LYS 98 ILE 99 SER 100 LYS 101 VAL 102 LEU 103 LEU 104 SER 105 ILE 106 CYS 107 SER 108 LEU 109 LEU 110 CYS 111 ASP 112 PRO 113 ASN 114 PRO 115 ASP 116 ASP 117 PRO 118 LEU 119 VAL 120 PRO 121 GLU 122 ILE 123 ALA 124 ARG 125 ILE 126 TYR 127 LYS 128 THR 129 ASP 130 ARG 131 GLU 132 LYS 133 TYR 134 ASN 135 ARG 136 ILE 137 ALA 138 ARG 139 GLU 140 TRP 141 THR 142 GLN 143 LYS 144 TYR 145 ALA 146 MET 147
Unit 2	ALA 2 SER 3 LYS 4 ARG 5 ILE 6 HIS 7 LYS 8 GLU 9 LEU 10 ASN 11 ASP 12 LEU 13 ALA 14 ARG 15 ASP 16 PRO 17 PRO 18 ALA 19 GLN 20 CYS 21 SER 22 ALA 23 GLY 24 PRO 25 VAL 26 GLY 27 ASP 28 ASP 29 MET 30 PHE 31 HIS 32 TRP 33 GLN 34 ALA 35 THR 36 ILE 37 MET 38 GLY 39 PRO 40 ASN 41 ASP 42 SER 43 PRO 44 TYR 45 GLN 46 GLY 47 GLY 48 VAL 49 PHE 50 PHE 51 LEU 52 THR 53 ILE 54 HIS 55 PHE 56 PRO 57 THR 58 ASP 59 TYR 60 PRO 61 PHE 62 LYS 63 PRO 64 PRO 65 LYS 66 VAL 67 ALA 68 PHE 69 THR 70 THR 71 ARG 72 ILE 73 TYR 74 HIS 75 PRO 76 ASN 77 ILE 78 ASN 79 SER 80 ASN 81 GLY 82 SER 83 ILE 84 SER 85 LEU 86 ASP 87 ILE 88 LEU 89 ARG 90 SER 91 GLN 92 TRP 93 SER 94 PRO 95 ALA 96 LEU 97 LYS 98 ILE 99 SER 100 LYS 101 VAL 102 LEU 103 LEU 104 SER 105 ILE 106 CYS 107 SER 108 LEU 109 LEU 110 CYS 111 ASP 112 PRO 113 ASN 114 PRO 115 ASP 116 ASP 117 PRO 118 LEU 119 VAL 120 PRO 121 GLU 122 ILE 123 ALA 124 ARG 125 ILE 126 TYR 127 LYS 128 THR 129 ASP 130 ARG 131 GLU 132 LYS 133 TYR 134 ASN 135 ARG 136 ILE 137 ALA 138 ARG 139 GLU 140 TRP 141 THR 142 GLN 143 LYS 144 TYR 145 ALA 146 MET 147
Unit 3	GLU 574 PHE 575 GLU 576 PHE 577 LYS 578 GLN 579 LYS 580 TYR 581 ASP 582 TYR 583 PHE 584 ARG 585 LYS 586 LYS 587 LEU 588 LYS 589 LYS 590 PRO 591 ALA 592 ASP 593 ILE 594 PRO 595 ASN 596 ARG 597 PHE 598 GLU 599 MET 600 LYS 601 LEU 602 HIS 603 ARG 604 ASN 605 ASN 606 ILE 607 PHE 608 GLU 609 GLU 610 SER 611 TYR 612 ARG 613 ARG 614 ILE 615 MET 616 SER 617 VAL 618 LYS 619 ARG 620 PRO 621 ASP 622 VAL 623 LEU 624 LYS 625 ALA 626 ARG 627 LEU 628 TRP 629 ILE 630 GLU 631 PHE 632 GLU 633 SER 634 GLU 635 LYS 636 GLY 637 LEU 638 ASP 639 TYR 640 GLY 641 GLY 642 VAL 643 ALA 644 ARG 645 GLU 646 TRP 647 PHE 648 PHE 649 LEU 650 LEU 651 SER 652 LYS 653 GLU 654 MET 655 PHE 656 ASN 657 PRO 658 TYR 659 TYR 660 GLY 661 LEU 662 PHE 663 GLU 664 TYR 665 SER 666 ALA 667 THR 668 ASP 669 ASN 670 TYR 671 THR 672 LEU 673 GLN 674 ILE 675 ASN 676 PRO 677 ASN 678 SER 679 GLY 680 LEU 681 CYS 682 ASN 683 GLU 684 ASP 685 HIS 686 LEU 687 SER 688 TYR 689 PHE 690 THR 691 PHE 692 ILE 693 GLY 694 ARG 695 VAL 696 ALA 697 GLY 698 LEU 699 ALA 700 VAL 701 PHE 702 HIS 703 GLY 704 LYS 705 LEU 706 LEU 707 ASP 708 GLY 709 PHE 710 PHE 711 ILE 712 ARG 713 PRO 714 PHE 715 TYR 716 LYS 717 MET 718 MET 719 LEU 720 GLY 721 LYS 722 GLN 723 ILE 724 THR 725 LEU 726 ASN 727 ASP 728 MET 729 GLU 730 SER 731 VAL 732 ASP 733 SER 734 GLU 735 TYR 736 TYR 737 ASN 738 SER 739 LEU 740 LYS 741 TRP 742 ILE 743 LEU 744 GLU 745 ASN 746 ASP 747 PRO 748 THR 749 GLU 750 LEU 751 ASP 752 LEU 753 MET 754 PHE 755 CYS 756 ILE 757 ASP 758 GLU 759 GLU 760 ASN 761 PHE 762 GLY 763 GLN 764 THR 765 TYR 766 GLN 767 VAL 768 ASP 769 LEU 770 LYS 771 PRO 772 ASN 773 GLY 774 SER 775 GLU 776 ILE 777 MET 778 VAL 779 THR 780 ASN 781 GLU 782 ASN 783 LYS 784 ARG 785 GLU 786 TYR 787 ILE 788 ASP 789 LEU 790 VAL 791 ILE 792 GLN 793 TRP 794 ARG 795 PHE 796 VAL 797 ASN 798 ARG 799 VAL 800 GLN 801 LYS 802 GLN 803 MET 804 ASN 805 ALA 806 PHE 807 LEU 808 GLU 809 GLY 810 PHE 811 THR 812 GLU 813 LEU 814 LEU 815 PRO 816 ILE 817 ASP 818 LEU 819 ILE 820 LYS 821 ILE 822 PHE 823 ASP 824 GLU 825 ASN 826 GLU 827 LEU 828 GLU 829 LEU 830 LEU 831 MET 832 CYS 833 GLY 834 LEU 835 GLY 836 ASP 837 VAL 838 ASP 839 VAL 840 ASN 841 ASP 842 TRP 843 ARG 844 GLN 845 HIS 846 SER 847 ILE 848 TYR 849 LYS 850 ASN 851 GLY 852 TYR 853 CYS 854 PRO 855 ASN 856 HIS 857 PRO 858 VAL 859 ILE 860 GLN 861 TRP 862 PHE 863 TRP 864 LYS 865 ALA 866 VAL 867 LEU 868 LEU 869 MET 870 ASP 871 ALA 872 GLU 873 LYS 874 ARG 875 ILE 876 ARG 877 LEU 878 LEU 879 GLN 880 PHE 881 VAL 882 THR 883 GLY 884 THR 885 SER 886 ARG 887 VAL 888 PRO 889 MET 890 ASN 891 GLY 892 PHE 893 ALA 894 GLU 895 LEU 896 TYR 897 GLY 898 SER 899 ASN 900 GLY 901 PRO 902 GLN 903 LEU 904 PHE 905 THR 906 ILE 907 GLU 908 GLN 909 TRP 910 GLY 911 SER 912 PRO 913 GLU 914 LYS 915 LEU 916 PRO 917 ARG 918 ALA 919 HIS 920 THR 921 ALA 922 PHE 923 ASN 924 ARG 925 LEU 926 ASP 927 LEU 928 PRO 929 PRO 930 TYR 931 GLU 932 THR 933 PHE 934 GLU 935 ASP 936 LEU 937 ARG 938 GLU 939 LYS 940 LEU 941 LEU 942 MET 943 ALA 944 VAL 945 GLU 946 ASN 947 ALA 948 GLN 949 GLY 950
Unit 4	GLU 576 PHE 577 LYS 578 GLN 579 LYS 580 TYR 581 ASP 582 TYR 583 PHE 584 ARG 585 LYS 586 LYS 587 LEU 588 LYS 589 LYS 590 PRO 591 ALA 592 ASP 593 ILE 594 PRO 595 ASN 596 ARG 597 PHE 598 GLU 599 MET 600 LYS 601 LEU 602 HIS 603 ARG 604 ASN 605 ASN 606 ILE 607 PHE 608 GLU 609 GLU 610 SER 611 TYR 612 ARG 613 ARG 614 ILE 615 MET 616 SER 617 VAL 618 LYS 619 ARG 620 PRO 621 ASP 622 VAL 623 LEU 624 LYS 625 ALA 626 ARG 627 LEU 628 TRP 629 ILE 630 GLU 631 PHE 632 GLU 633 SER 634 GLU 635 LYS 636 GLY 637 LEU 638 ASP 639 TYR 640 GLY 641 GLY 642 VAL 643 ALA 644 ARG 645 GLU 646 TRP 647 PHE 648 PHE 649 LEU 650 LEU 651 SER 652 LYS 653 GLU 654 MET 655 PHE 656 ASN 657 PRO 658 TYR 659 TYR 660 GLY 661 LEU 662 PHE 663 GLU 664 TYR 665 SER 666 ALA 667 THR 668 ASP 669 ASN 670 TYR 671 THR 672 LEU 673 GLN 674 ILE 675 ASN 676 PRO 677 ASN 678 SER 679 GLY 680 LEU 681 CYS 682 ASN 683 GLU 684 ASP 685 HIS 686 LEU 687 SER 688 TYR 689 PHE 690 THR 691 PHE 692 ILE 693 GLY 694 ARG 695 VAL 696 ALA 697 GLY 698 LEU 699 ALA 700 VAL 701 PHE 702 HIS 703 GLY 704 LYS 705 LEU 706 LEU 707 ASP 708 GLY 709 PHE 710 PHE 711 ILE 712 ARG 713 PRO 714 PHE 715 TYR 716 LYS 717 MET 718 MET 719 LEU 720 GLY 721 LYS 722 GLN 723 ILE 724 THR 725 LEU 726 ASN 727 ASP 728 MET 729 GLU 730 SER 731 VAL 732 ASP 733 SER 734 GLU 735 TYR 736 TYR 737 ASN 738 SER 739 LEU 740 LYS 741 TRP 742 ILE 743 LEU 744 GLU 745 ASN 746 ASP 747 PRO 748 THR 749 GLU 750 LEU 751 ASP 752 LEU 753 MET 754 PHE 755 CYS 756 ILE 757 ASP 758 GLU 759 GLU 760 ASN 761 PHE 762 GLY 763 GLN 764 THR 765 TYR 766 GLN 767 VAL 768 ASP 769 LEU 770 LYS 771 PRO 772 ASN 773 GLY 774 SER 775 GLU 776 ILE 777 MET 778 VAL 779 THR 780 ASN 781 GLU 782 ASN 783 LYS 784 ARG 785 GLU 786 TYR 787 ILE 788 ASP 789 LEU 790 VAL 791 ILE 792 GLN 793 TRP 794 ARG 795 PHE 796 VAL 797 ASN 798 ARG 799 VAL 800 GLN 801 LYS 802 GLN 803 MET 804 ASN 805 ALA 806 PHE 807 LEU 808 GLU 809 GLY 810 PHE 811 THR 812 GLU 813 LEU 814 LEU 815 PRO 816 ILE 817 ASP 818 LEU 819 ILE 820 LYS 821 ILE 822 PHE 823 ASP 824 GLU 825 ASN 826 GLU 827 LEU 828 GLU 829 LEU 830 LEU 831 MET 832 CYS 833 GLY 834 LEU 835 GLY 836 ASP 837 VAL 838 ASP 839 VAL 840 ASN 841 ASP 842 TRP 843 ARG 844 GLN 845 HIS 846 SER 847 ILE 848 TYR 849 LYS 850 ASN 851 GLY 852 TYR 853 CYS 854 PRO 855 ASN 856 HIS 857 PRO 858 VAL 859 ILE 860 GLN 861 TRP 862 PHE 863 TRP 864 LYS 865 ALA 866 VAL 867 LEU 868 LEU 869 MET 870 ASP 871 ALA 872 GLU 873 LYS 874 ARG 875 ILE 876 ARG 877 LEU 878 LEU 879 GLN 880 PHE 881 VAL 882 THR 883 GLY 884 THR 885 SER 886 ARG 887 VAL 888 PRO 889 MET 890 ASN 891 GLY 892 PHE 893 ALA 894 GLU 895 LEU 896 TYR 897 GLY 898 SER 899 ASN 900 GLY 901 PRO 902 GLN 903 LEU 904 PHE 905 THR 906 ILE 907 GLU 908 GLN 909 TRP 910 GLY 911 SER 912 PRO 913 GLU 914 LYS 915 LEU 916 PRO 917 ARG 918 ALA 919 HIS 920 THR 921 ALA 922 PHE 923 ASN 924 ARG 925 LEU 926 ASP 927 LEU 928 PRO 929 PRO 930 TYR 931 GLU 932 THR 933 PHE 934 GLU 935 ASP 936 LEU 937 ARG 938 GLU 939 LYS 940 LEU 941 LEU 942 MET 943 ALA 944 VAL 945 GLU 946 ASN 947 ALA 948 GLN 949
Unit 5	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 GLY 76
Unit 6	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 GLY 76