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Title | THE STRUCTURE OF THE COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT RADIODURANS WITH THE ANTIBIOTIC LANKACIDIN | |
Keywords | RIBOSOME STRUCTURE, ANTIBIOTICS, LANKACIDIN, LANKAMYCIN, PRO SYNTHESIS, INHIBITORS, SYNERGISM, MACROLIDE, RNA | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3JQ4 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 2765 | 59336 | 0 | |
2 | RNA | B | 118 | 2516 | 0 | |
3 | Ligand | 23S RIBOSOMAL RNA | A | 1 | 0 | 33 |
total | 2884 | 61852 | 33 |
Unit 1 | G1 G2 U3 C4 A5 A6 G7 A8 U9 A10 G11 U12 A13 A14 G15 G16 G17 U18 C19 C20 A21 C22 G23 G24 U25 G26 G27 A28 U29 G30 C31 C32 C33 U34 G35 G36 C37 G38 C39 U40 G41 G42 A43 G44 C45 C46 G47 A48 U49 G50 A51 A52 G53 G54 A55 C56 G57 C58 G59 A60 U61 U62 A63 C64 C65 U66 G67 C68 G69 A70 A71 A72 A73 G74 C75 C76 C77 C78 G79 A80 C81 G82 A83 G84 C85 U86 G87 G88 A89 G90 A91 U92 A93 C94 G95 C96 U97 U98 U99 G100 A101 C102 U103 C104 G105 G106 G107 G108 A109 U110 G111 U112 C113 C114 G115 A116 A117 U118 G119 G120 G121 G122 A123 A124 A125 C126 C127 C128 A129 C130 C131 U132 C133 G134 U135 A136 A137 G138 A139 G140 G141 U142 A143 U144 C145 C146 G147 C148 A149 A150 G151 G152 A153 U154 G155 G156 G157 A158 A159 C160 U161 C162 A163 G164 G165 G166 A167 A168 C169 U170 G171 A172 A173 A174 C175 A176 U177 C178 U179 C180 A181 G182 U183 A184 C185 C186 U187 G188 A189 A190 G191 G192 A193 G194 A195 A196 G197 A198 A199 A200 G201 A202 G203 A204 A205 U206 U207 C208 G209 A210 U211 U212 C213 C214 G215 U216 U217 A218 G219 U220 A221 G222 C223 G224 G225 C226 G227 A228 G229 C230 G231 A232 A233 C234 C235 C236 G237 G238 A239 U240 C241 A242 G243 C244 C245 C246 A247 A248 A292 U293 U294 C295 A296 A297 C298 C299 C300 C301 U302 C303 A304 A305 G306 C307 C308 G309 A310 A311 G312 U313 G314 G315 C316 U317 G318 G319 A320 A321 A322 G323 C324 U325 A326 C327 A328 C329 C330 U331 C332 A333 G334 A335 A336 G337 G338 U339 G340 A341 G342 A343 G344 U345 C346 C347 U348 G349 U350 A351 G352 G353 C354 G355 A356 A357 C358 G359 A360 G361 C362 G363 G364 U365 U366 G367 A368 C369 U370 G371 U372 A373 A387 G388 G389 U390 C391 G392 U393 U394 G395 U396 U397 C398 G399 U400 G401 A402 A403 A404 C405 G406 A407 U408 G409 A410 C411 U412 G413 A414 A415 U416 C417 C418 G419 C420 G421 C422 G423 G424 A425 C426 C427 A428 C429 C430 G431 C432 G433 C434 A435 A436 G437 G438 C439 U440 A441 A442 A443 U444 A445 C446 U447 C448 C449 C450 A451 G452 U453 G454 A455 C456 C457 G458 A459 U460 A461 G462 C463 G464 C465 A466 U467 A468 G469 U470 A471 C472 C473 G474 U475 G476 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G677 G678 C679 U680 A681 G682 A683 C684 U685 C686 G687 A688 A689 A690 C691 C692 A693 G694 G695 U696 G697 A698 G699 C700 U701 A702 A703 G704 C705 A706 U707 G708 A709 C710 C711 A712 G713 G714 U715 U716 G717 A718 A719 A720 C721 C722 C723 C724 C725 G726 U727 G728 A729 C730 A731 G732 G733 G734 G735 G736 C737 G738 G739 A740 G741 G742 A743 C744 C745 G746 A747 A748 C749 C750 G751 G752 U753 G754 C755 C756 U757 G758 C759 U760 G761 A762 A763 A764 C765 A766 G767 U768 C769 U770 C771 G772 G773 A774 U775 G776 A777 G778 U779 U780 G781 U782 G783 U784 U785 U786 A787 G789 A790 G791 U792 G793 A794 A795 A796 A797 G798 C799 U800 A801 A802 C803 C804 G805 A806 A807 C808 C809 U810 G811 G812 A813 G814 A815 U816 A817 G818 C819 U820 A821 G822 U823 U824 C825 U826 C827 C828 C829 C830 G831 A832 A833 A834 U835 G836 U837 A838 U839 U840 G841 A842 G843 G844 U845 A846 C847 A848 G849 C850 C851 U852 C853 G854 G855 A856 U857 G858 U859 U860 G861 A862 C863 C864 A865 U866 G867 U868 C869 C870 U871 G872 U873 A874 G875 A876 G877 C878 A879 C880 U881 C882 A883 C884 A885 A886 G887 G888 C889 U890 A891 A911 A912 A913 C914 C915 U916 U917 A918 U919 G920 A921 A922 A923 C924 U925 C926 C927 G928 A929 A930 G931 G932 G933 G934 C935 A936 C937 G938 C939 G940 U941 U942 U943 A944 G945 U946 C947 C948 G949 G950 G951 A952 G953 U954 G955 A956 G957 G958 C959 U960 G961 C962 G963 A964 G965 A966 G967 C968 U969 A970 A971 C972 U973 U974 C975 C976 G977 U978 A979 G980 C981 C982 G983 A984 G985 A986 G987 G988 G989 A990 A991 A992 C993 A994 A995 C996 C997 C998 A999 G1000 A1001 C1002 C1003 A1004 U1005 C1006 A1007 G1008 C1009 U1010 A1011 A1012 G1013 G1014 U1015 C1016 C1017 C1018 U1019 A1020 A1021 A1022 U1023 G1024 A1025 U1026 C1027 G1028 C1029 U1030 C1031 A1032 G1033 U1034 G1035 G1036 U1037 U1038 A1039 A1040 G1041 G1042 A1043 U1044 G1045 U1046 G1047 U1048 C1049 G1050 U1051 C1052 G1053 C1054 A1055 U1056 A1057 G1058 A1059 C1060 A1061 G1062 C1063 C1064 A1065 G1066 G1067 A1068 G1069 G1070 U1071 U1072 G1073 G1074 C1075 U1076 U1077 A1078 G1079 A1080 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A2608 G2609 G2610 A2611 G2612 A2613 A2614 U2615 U2616 G2617 A2618 G2619 G2620 G2621 G2622 A2623 G2624 U2625 U2626 G2627 C2628 U2629 C2630 C2631 U2632 A2633 G2634 U2635 A2636 C2637 G2638 A2639 G2640 A2641 G2642 G2643 A2644 C2645 C2646 G2647 G2648 A2649 G2650 U2651 G2652 A2653 A2654 C2655 G2656 G2657 A2658 C2659 C2660 G2661 C2662 U2663 G2664 G2665 U2666 C2667 U2668 C2669 C2670 C2671 U2672 G2673 C2674 U2675 G2676 U2677 C2678 G2679 U2680 A2681 C2682 C2683 A2684 A2685 C2686 G2687 G2688 C2689 A2690 C2691 A2692 U2693 G2694 C2695 A2696 G2697 G2698 G2699 U2700 A2701 G2702 C2703 U2704 A2705 U2706 G2707 U2708 C2709 C2710 G2711 G2712 A2713 A2714 C2715 G2716 G2717 A2718 U2719 A2720 A2721 C2722 C2723 G2724 C2725 U2726 G2727 A2728 A2729 A2730 G2731 C2732 A2733 U2734 C2735 U2736 A2737 A2738 G2739 C2740 G2741 G2742 G2743 A2744 A2745 G2746 C2747 C2748 A2749 G2750 C2751 C2752 C2753 C2754 A2755 A2756 G2757 A2758 U2759 G2760 A2761 G2762 U2763 U2764 C2765 U2766 C2767 C2768 C2769 A2770 C2771 U2772 G2773 U2774 U2778 C2779 A2780 G2781 G2782 U2783 A2784 A2785 G2786 A2787 C2788 U2789 C2790 C2791 C2792 G2793 G2794 A2795 A2796 G2797 A2798 C2799 C2800 A2801 C2802 C2803 G2804 G2805 G2806 U2807 U2808 A2809 A2810 G2811 A2812 G2813 G2814 C2815 C2816 A2817 G2818 G2819 C2820 G2821 U2822 G2823 C2824 A2825 C2826 G2827 C2828 A2829 U2830 A2831 G2832 C2833 A2834 A2835 U2836 G2837 U2838 G2839 U2840 U2841 C2842 A2843 G2844 C2845 G2846 G2847 A2848 C2849 U2850 G2851 G2852 U2853 G2854 C2855 U2856 C2857 A2858 U2859 C2860 A2861 G2862 U2863 C2864 G2865 A2866 G2867 G2868 U2869 C2870 U2871 U2872 G2873 A2874 C2875 C2876 A2877 |
Unit 2 | C4 C5 C6 C7 C8 G9 U10 G11 C12 C13 C14 A15 U16 A17 G18 C19 A20 C21 U22 G23 U24 G25 G26 A27 A28 C29 C30 A31 C32 C33 C34 C35 A36 C37 C38 C39 C40 A41 U42 G43 C44 C45 G46 A47 A48 C49 U50 G51 G52 G53 U54 C55 G56 U57 G58 A59 A60 A61 C62 A63 C64 A65 G66 C67 A68 G69 C70 G71 C72 C73 A74 A75 U76 G77 A78 U79 A80 C81 U82 C83 G84 G85 A86 C87 C88 G89 C90 A91 G92 G93 G94 U95 C96 C97 C98 G99 G100 A101 A102 A103 A104 G105 U106 C107 G108 G109 U110 C111 A112 G113 C114 G115 C116 G117 G118 G119 G120 G121 |
Unit 3 | LC22881 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |