3JD7 - Sequence, Chains, Asymmetric and Biological Units

• Title: THE NOVEL ASYMMETRIC ENTRY INTERMEDIATE OF A PICORNAVIRUS CA WITH NANODISCS
• Keywords: PICORNAVIRUS, ENTRY INTERMEDIATE, VIRUS
• Experiment: ELECTRON MICROSCOPY
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3JD7	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CAPSID PROTEIN VP1	1	270	2139	0
2	Protein	CAPSID PROTEIN VP2	2	256	1973	0
3	Protein	CAPSID PROTEIN VP3	3	238	1837	0
4	Protein	CAPSID PROTEIN VP4	4	56	436	0
5	Ligand	CAPSID PROTEIN VP1	1	1	0	18
total				821	6385	18

Proteins

Unit 1	GLY 12 ARG 13 VAL 14 ALA 15 ASP 16 THR 17 VAL 18 GLY 19 THR 20 GLY 21 PRO 22 THR 23 ASN 24 SER 25 GLU 26 ALA 27 ILE 28 PRO 29 ALA 30 LEU 31 THR 32 ALA 33 ALA 34 GLU 35 THR 36 GLY 37 HIS 38 THR 39 SER 40 GLN 41 VAL 42 VAL 43 PRO 44 SER 45 ASP 46 THR 47 MET 48 GLN 49 THR 50 ARG 51 HIS 52 VAL 53 LYS 54 ASN 55 TYR 56 HIS 57 SER 58 ARG 59 SER 60 GLU 61 SER 62 THR 63 ILE 64 GLU 65 ASN 66 PHE 67 LEU 68 CYS 69 ARG 70 SER 71 ALA 72 CYS 73 VAL 74 TYR 75 PHE 76 THR 77 GLU 78 TYR 79 GLU 80 ASN 81 SER 82 GLY 83 ALA 84 LYS 85 ARG 86 TYR 87 ALA 88 GLU 89 TRP 90 VAL 91 ILE 92 THR 93 PRO 94 ARG 95 GLN 96 ALA 97 ALA 98 GLN 99 LEU 100 ARG 101 ARG 102 LYS 103 LEU 104 GLU 105 PHE 106 PHE 107 THR 108 TYR 109 VAL 110 ARG 111 PHE 112 ASP 113 LEU 114 GLU 115 LEU 116 THR 117 PHE 118 VAL 119 ILE 120 THR 121 SER 122 THR 123 GLN 124 GLN 125 PRO 126 SER 127 THR 128 THR 129 GLN 130 ASN 131 GLN 132 ASP 133 ALA 134 GLN 135 ILE 136 LEU 137 THR 138 HIS 139 GLN 140 ILE 141 MET 142 TYR 143 VAL 144 PRO 145 PRO 146 GLY 147 GLY 148 PRO 149 VAL 150 PRO 151 ASP 152 LYS 153 VAL 154 ASP 155 SER 156 TYR 157 VAL 158 TRP 159 GLN 160 THR 161 SER 162 THR 163 ASN 164 PRO 165 SER 166 VAL 167 PHE 168 TRP 169 THR 170 GLU 171 GLY 172 ASN 173 ALA 174 PRO 175 PRO 176 ARG 177 MET 178 SER 179 VAL 180 PRO 181 PHE 182 LEU 183 SER 184 ILE 185 GLY 186 ASN 187 ALA 188 TYR 189 SER 190 ASN 191 PHE 192 TYR 193 ASP 194 GLY 195 TRP 196 SER 197 GLU 198 PHE 199 SER 200 ARG 201 ASN 202 GLY 203 VAL 204 TYR 205 GLY 206 ILE 207 ASN 208 THR 209 LEU 210 ASN 211 ASN 212 MET 213 GLY 214 THR 215 LEU 216 TYR 217 ALA 218 ARG 219 HIS 220 VAL 221 ASN 222 ALA 223 GLY 224 SER 225 THR 226 GLY 227 PRO 228 ILE 229 LYS 230 SER 231 THR 232 ILE 233 ARG 234 ILE 235 TYR 236 PHE 237 LYS 238 PRO 239 LYS 240 HIS 241 VAL 242 LYS 243 ALA 244 TRP 245 ILE 246 PRO 247 ARG 248 PRO 249 PRO 250 ARG 251 LEU 252 CYS 253 GLN 254 TYR 255 GLU 256 LYS 257 ALA 258 LYS 259 ASN 260 VAL 261 ASN 262 PHE 263 GLN 264 PRO 265 SER 266 GLY 267 VAL 268 THR 269 THR 270 THR 271 ARG 272 GLN 273 SER 274 ILE 275 THR 276 THR 277 MET 278 THR 279 ASN 280 THR 281
Unit 2	GLY 8 TYR 9 SER 10 ASP 11 ARG 12 VAL 13 ARG 14 SER 15 ILE 16 THR 17 LEU 18 GLY 19 ASN 20 SER 21 THR 22 ILE 23 THR 24 THR 25 GLN 26 GLU 27 CYS 28 ALA 29 ASN 30 VAL 31 VAL 32 VAL 33 GLY 34 TYR 35 GLY 36 VAL 37 TRP 38 PRO 39 ASP 40 TYR 41 LEU 42 LYS 43 ASP 44 SER 45 GLU 46 ALA 47 THR 48 ALA 49 GLU 50 ASP 51 GLN 52 PRO 53 THR 54 GLN 55 PRO 56 ASP 57 VAL 58 ALA 59 THR 60 CYS 61 ARG 62 PHE 63 TYR 64 THR 65 LEU 66 ASP 67 SER 68 VAL 69 GLN 70 TRP 71 GLN 72 LYS 73 THR 74 SER 75 PRO 76 GLY 77 TRP 78 TRP 79 TRP 80 LYS 81 LEU 82 PRO 83 ASP 84 ALA 85 LEU 86 SER 87 ASN 88 LEU 89 GLY 90 LEU 91 PHE 92 GLY 93 GLN 94 ASN 95 MET 96 GLN 97 TYR 98 HIS 99 TYR 100 LEU 101 GLY 102 ARG 103 THR 104 GLY 105 TYR 106 THR 107 ILE 108 HIS 109 VAL 110 GLN 111 CYS 112 ASN 113 ALA 114 SER 115 LYS 116 PHE 117 HIS 118 GLN 119 GLY 120 CYS 121 LEU 122 LEU 123 VAL 124 VAL 125 CYS 126 VAL 127 PRO 128 GLU 129 ALA 130 GLU 131 MET 132 GLY 133 CYS 134 ALA 135 THR 136 LEU 137 ASN 138 ASN 139 THR 140 PRO 141 SER 142 SER 143 ALA 144 GLU 145 LEU 146 LEU 147 GLY 148 GLY 149 ASP 150 THR 151 ALA 152 LYS 153 GLU 154 PHE 155 ALA 156 ASP 157 LYS 158 PRO 159 VAL 160 ALA 161 SER 162 GLY 163 SER 164 ASN 165 LYS 166 LEU 167 VAL 168 GLN 169 ARG 170 VAL 171 VAL 172 TYR 173 ASN 174 ALA 175 GLY 176 MET 177 GLY 178 VAL 179 GLY 180 VAL 181 GLY 182 ASN 183 LEU 184 THR 185 ILE 186 PHE 187 PRO 188 HIS 189 GLN 190 TRP 191 ILE 192 ASN 193 LEU 194 ARG 195 THR 196 ASN 197 ASN 198 SER 199 ALA 200 THR 201 ILE 202 VAL 203 MET 204 PRO 205 TYR 206 THR 207 ASN 208 SER 209 VAL 210 PRO 211 MET 212 ASP 213 ASN 214 MET 215 PHE 216 ARG 217 HIS 218 ASN 219 ASN 220 VAL 221 THR 222 LEU 223 MET 224 VAL 225 ILE 226 PRO 227 PHE 228 VAL 229 PRO 230 LEU 231 ASP 232 TYR 233 CYS 234 PRO 235 GLY 236 SER 237 THR 238 THR 239 TYR 240 VAL 241 PRO 242 ILE 243 THR 244 VAL 245 THR 246 ILE 247 ALA 248 PRO 249 MET 250 CYS 251 ALA 252 GLU 253 TYR 254 ASN 255 GLY 256 LEU 257 ARG 258 LEU 259 ALA 260 GLY 261 HIS 262 GLN 263
Unit 3	GLY 1 LEU 2 PRO 3 THR 4 MET 5 ASN 6 THR 7 PRO 8 GLY 9 SER 10 CYS 11 GLN 12 PHE 13 LEU 14 THR 15 SER 16 ASP 17 ASP 18 PHE 19 GLN 20 SER 21 PRO 22 SER 23 ALA 24 MET 25 PRO 26 GLN 27 TYR 28 ASP 29 VAL 30 THR 31 PRO 32 GLU 33 MET 34 ARG 35 ILE 36 PRO 37 GLY 38 GLU 39 VAL 40 LYS 41 ASN 42 LEU 43 MET 44 GLU 45 ILE 46 ALA 47 GLU 48 VAL 49 ASP 50 SER 51 VAL 52 VAL 53 PRO 54 VAL 55 GLN 56 ASN 57 VAL 58 GLY 59 GLU 60 LYS 61 VAL 62 ASN 63 SER 64 MET 65 GLU 66 ALA 67 TYR 68 GLN 69 ILE 70 PRO 71 VAL 72 ARG 73 SER 74 ASN 75 GLU 76 GLY 77 SER 78 GLY 79 THR 80 GLN 81 VAL 82 PHE 83 GLY 84 PHE 85 PRO 86 LEU 87 GLN 88 PRO 89 GLY 90 TYR 91 SER 92 SER 93 VAL 94 PHE 95 SER 96 ARG 97 THR 98 LEU 99 LEU 100 GLY 101 GLU 102 ILE 103 LEU 104 ASN 105 TYR 106 TYR 107 THR 108 HIS 109 TRP 110 SER 111 GLY 112 SER 113 ILE 114 LYS 115 LEU 116 THR 117 PHE 118 MET 119 PHE 120 CYS 121 GLY 122 SER 123 ALA 124 MET 125 ALA 126 THR 127 GLY 128 LYS 129 PHE 130 LEU 131 LEU 132 ALA 133 TYR 134 SER 135 PRO 136 PRO 137 GLY 138 ALA 139 GLY 140 ALA 141 PRO 142 THR 143 LYS 144 ARG 145 VAL 146 ASP 147 ALA 148 MET 149 LEU 150 GLY 151 THR 152 HIS 153 VAL 154 VAL 155 TRP 156 ASP 157 VAL 158 GLY 159 LEU 160 GLN 161 SER 162 SER 163 CYS 164 VAL 165 LEU 166 CYS 167 ILE 168 PRO 169 TRP 170 ILE 171 SER 172 GLN 173 THR 174 HIS 175 TYR 176 ARG 177 TYR 178 VAL 179 ALA 180 SER 181 ASP 182 GLU 183 TYR 184 THR 185 ALA 186 GLY 187 GLY 188 PHE 189 ILE 190 THR 191 CYS 192 TRP 193 TYR 194 GLN 195 THR 196 ASN 197 ILE 198 VAL 199 VAL 200 PRO 201 ALA 202 ASP 203 ALA 204 GLN 205 SER 206 SER 207 CYS 208 TYR 209 ILE 210 MET 211 CYS 212 PHE 213 VAL 214 SER 215 ALA 216 CYS 217 ASN 218 ASP 219 PHE 220 SER 221 VAL 222 ARG 223 LEU 224 LEU 225 LYS 226 ASP 227 THR 228 PRO 229 PHE 230 ILE 231 SER 232 GLN 233 GLU 234 ASN 235 PHE 236 PHE 237 GLN 238
Unit 4	GLY 2 ALA 3 GLN 4 VAL 5 SER 6 THR 7 GLN 8 LYS 9 THR 10 GLY 11 ALA 12 ILE 25 HIS 26 TYR 27 THR 28 ASN 29 ILE 30 ASN 31 TYR 32 TYR 33 LYS 34 ASP 35 ALA 36 ALA 37 SER 38 ASN 39 SER 40 ALA 41 ASN 42 ARG 43 GLN 44 ASP 45 PHE 46 THR 47 GLN 48 ASP 49 PRO 50 SER 51 LYS 52 PHE 53 THR 54 GLU 55 PRO 56 VAL 57 LYS 58 ASP 59 ILE 60 MET 61 ILE 62 LYS 63 SER 64 LEU 65 PRO 66 ALA 67 LEU 68 ASN 69

Ligands

Unit 5

PLM 301