Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS ENVELOPE SPIKES B CD4 AND MONOCLONAL ANTIBODY 36D5
Keywords CRYOELECTRON TOMOGRAPHY, IMMUNOLOGY, AIDS, HIV, VIRAL PROTEI SYSTEM COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3JCB     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENVELOPE GLYCOPROTEIN GP120  A 420 3096 0
2  Protein   ANTIBODY 36D5 LIGHT CHAIN  B 202 1530 0
3  Protein   ANTIBODY 36D5 HEAVY CHAIN  C 226 1728 0
4  Protein   T-CELL SURFACE GLYCOPROTEIN CD4  D 175 1363 0
5  Protein   ENVELOPE GLYCOPROTEIN GP120  E 420 3096 0
6  Protein   ENVELOPE GLYCOPROTEIN GP120  I 420 3096 0
total       1863 13909 0

Proteins
Unit 1 VAL44 TRP45 LYS46 ASP47 ALA48 GLU49 THR50 THR51 LEU52 PHE53 CYS54 ALA55 SER56 ASP57 ALA58 LYS59 ALA60 TYR61 GLU62 THR63 GLU64 LYS65 HIS66 ASN67 VAL68 TRP69 ALA70 THR71 HIS72 ALA73 CYS74 VAL75 PRO76 THR77 ASP78 PRO79 ASN80 PRO81 GLN82 GLU83 ILE84 HIS85 LEU86 GLU87 ASN88 VAL89 THR90 GLU91 GLU92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASN99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 THR106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 PRO124 LEU125 CYS126 VAL127 THR128 LEU129 GLN130 CYS131 THR132 ASN133 VAL134 THR135 ASN136 ASN137 ILE138 THR139 ASP140 ASP149 MET150 ARG151 GLY152 GLU153 LEU154 LYS155 ASN156 CYS157 SER158 PHE159 ASN160 MET161 THR162 THR163 GLU164 LEU165 ARG166 ASP167 LYS168 LYS169 GLN170 LYS171 VAL172 TYR173 SER174 LEU175 PHE176 TYR177 ARG178 TYR191 ARG192 LEU193 ILE194 ASN195 CYS196 ASN197 THR198 SER199 ALA200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 GLU211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 LYS229 ASP230 LYS231 LYS232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 PRO240 SER241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 LYS252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 VAL270 MET271 ILE272 ARG273 SER274 GLU275 ASN276 ILE277 THR278 ASN279 ASN280 ALA281 LYS282 ASN283 ILE284 LEU285 VAL286 GLN287 PHE288 ASN289 THR290 PRO291 VAL292 GLN293 ILE294 ASN295 CYS296 THR297 ARG298 PRO299 ASN300 ASN301 ASN302 THR303 ARG304 LYS305 SER306 ILE307 ARG308 ILE309 GLY311 PRO312 GLY313 GLN314 ALA315 PHE316 TYR317 ALA318 THR319 GLY320 ASP321 ILE322 ILE323 GLY324 ASP325 ILE326 ARG327 GLN328 ALA329 HIS330 CYS331 ASN332 VAL333 SER334 LYS335 ALA336 THR337 TRP338 ASN339 GLU340 THR341 LEU342 GLY343 LYS344 VAL345 VAL346 LYS347 GLN348 LEU349 ARG350 LYS351 HIS352 PHE353 GLY354 ASN355 ASN356 THR357 ILE358 ILE359 ARG360 PHE361 ALA362 ASN363 SER364 SER365 GLY366 GLY367 ASP368 LEU369 GLU370 VAL371 THR372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 GLY379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 THR387 SER388 GLY389 LEU390 PHE391 ASN392 SER393 THR394 TRP395 ILE396 SER397 ASN398 THR399 SER400 VAL401 ASN411 ASP412 SER413 ILE414 THR415 LEU416 PRO417 CYS418 ARG419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 ARG429 ILE430 GLY431 GLN432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 GLN440 GLY441 VAL442 ILE443 ARG444 CYS445 VAL446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 ILE453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 SER460 THR461 ASN462 SER463 THR464 THR465 GLU466 THR467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 LYS490 ILE491 GLU492 PRO493
Unit 2 THR8 PHE9 VAL11 SER12 VAL13 ALA14 PRO15 GLY16 GLN17 THR18 ALA19 ARG20 ILE21 THR22 CYS23 GLY24 GLU25 GLU26 SER27 LEU28 GLY29 SER30 ARG31 SER32 VAL33 ILE34 TRP35 TYR36 GLN37 GLN38 ARG39 PRO40 GLY41 GLN42 ALA43 PRO44 SER45 LEU46 ILE47 ILE48 TYR49 ASN50 ASN51 ASN52 ASP53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 ASP60 ARG61 PHE62 SER63 GLY64 SER65 PRO66 GLY67 SER67A THR67B PHE67C GLY68 THR69 THR70 ALA71 THR72 LEU73 THR74 ILE75 THR76 SER77 VAL78 GLU79 ALA80 GLY81 ASP82 GLU83 ALA84 ASP85 TYR86 TYR87 CYS88 HIS89 ILE90 TRP91 ASP92 SER93 ARG94 ARG95 PRO95A THR95B ASN95C TRP96 VAL97 PHE98 GLY99 GLU100 GLY101 THR102 THR103 LEU104 ILE105 VAL106 LEU107 SER108 GLN109 PRO110 LYS111 ALA112 ALA113 PRO114 SER115 VAL116 THR117 LEU118 PHE119 PRO120 PRO121 SER122 SER123 GLU124 GLU125 LEU126 GLN127 ALA128 ASN129 LYS130 ALA131 THR132 LEU133 VAL134 CYS135 LEU136 ILE137 SER138 ASP139 PHE140 TYR141 PRO142 GLY143 ALA144 VAL145 THR146 VAL147 ALA148 TRP149 LYS150 ALA151 ASP152 SER153 SER154 PRO155 VAL156 LYS157 ALA158 GLY159 VAL160 GLU161 THR162 THR163 THR164 PRO165 SER166 LYS167 TYR173 ALA174 ALA175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 PRO183 GLU184 GLN185 TRP186 LYS187 SER188 HIS189 LYS190 SER191 TYR192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 SER201 THR202 VAL203 GLU204 LYS205 THR206 VAL207 ALA208 PRO209
Unit 3 GLN1 VAL2 HIS3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 ASN23 VAL24 SER25 GLY26 THR27 LEU28 VAL29 ARG30 ASP31 ASN32 TYR33 TRP34 SER35 TRP36 ILE37 ARG38 GLN39 PRO40 LEU41 GLY42 LYS43 GLN44 PRO45 GLU46 TRP47 ILE48 GLY49 TYR50 VAL51 HIS52 ASP53 SER54 GLY55 ASP56 THR57 ASN58 TYR59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 HIS68 LEU69 SER70 LEU71 ASP72 LYS73 SER74 LYS75 ASN76 LEU77 VAL78 SER79 LEU80 ARG81 LEU82 THR82A GLY82B VAL82C THR83 ALA84 ALA85 ASP86 SER87 ALA88 ILE89 TYR90 TYR91 CYS92 ALA93 THR94 THR95 LYS96 HIS97 GLY98 ARG99 ARG100 ILE100A TYR100B GLY100C VAL100D VAL100E ALA100F PHE100G LYS100H GLU100I TRP100J PHE100K THR100L TYR100M PHE100N TYR100O MET100P ASP100Q VAL100R TRP101 GLY102 LYS103 GLY104 THR105 SER106 VAL107 THR108 VAL109 SER110 SER111 ALA112 SER113 THR114 LYS115 GLY116 PRO117 SER118 VAL119 PHE120 PRO121 LEU122 ALA123 PRO124 SER125 SER126 GLY131 GLY132 THR133 ALA134 ALA135 LEU136 GLY137 CYS138 LEU139 VAL140 LYS141 ASP142 TYR143 PHE144 PRO145 GLU146 PRO147 VAL148 THR149 VAL150 SER151 TRP152 ASN153 SER154 GLY155 ALA156 LEU157 THR158 SER159 GLY160 VAL161 HIS162 THR163 PHE164 PRO165 ALA166 VAL167 LEU168 GLN169 SER170 SER171 GLY172 LEU173 TYR174 SER175 LEU176 SER177 SER178 VAL179 VAL180 THR181 VAL182 PRO183 SER184 SER185 GLY188 THR189 GLN190 THR191 TYR192 ILE193 CYS194 ASN195 VAL196 ASN197 HIS198 LYS199 PRO200 SER201 ASN202 THR203 LYS204 VAL205 ASP206 LYS207 ARG208 VAL209 GLU210 PRO211
Unit 4 LYS1 LYS2 VAL3 VAL4 LEU5 GLY6 LYS7 LYS8 GLY9 ASP10 THR11 VAL12 GLU13 LEU14 THR15 CYS16 THR17 ALA18 SER19 GLN20 LYS21 LYS22 SER23 ILE24 GLN25 PHE26 HIS27 TRP28 LYS29 ASN30 SER31 ASN32 GLN33 ILE34 LYS35 ILE36 LEU37 GLY38 ASN39 GLN40 GLY41 SER42 PHE43 LEU44 THR45 LYS46 GLY47 PRO48 SER49 LYS50 LEU51 ASN52 ASP53 ARG54 ALA55 ASP56 SER57 ARG58 ARG59 SER60 LEU61 TRP62 ASP63 GLN64 GLY65 ASN66 PHE67 PRO68 LEU69 ILE70 ILE71 LYS72 ASN73 LEU74 LYS75 ILE76 GLU77 ASP78 SER79 ASP80 THR81 TYR82 ILE83 CYS84 GLU85 VAL86 GLU87 ASP88 GLN89 LYS90 GLU91 GLU92 VAL93 GLN94 LEU95 LEU96 VAL97 PHE98 GLY99 LEU100 THR101 ALA102 ASN103 SER104 ASP105 THR106 HIS107 LEU108 LEU109 GLN110 GLY111 GLN112 SER113 LEU114 THR115 LEU116 THR117 LEU118 GLU119 SER120 PRO121 PRO122 GLY123 SER124 SER125 PRO126 SER127 VAL128 GLN129 CYS130 ARG131 SER132 PRO133 ARG134 GLY135 LYS136 ASN137 ILE138 GLN139 GLY140 GLY141 LYS142 THR143 LEU144 SER145 VAL146 SER147 GLN148 LEU149 GLU150 LEU151 GLN152 ASP153 SER154 GLY155 THR156 TRP157 THR158 CYS159 THR160 VAL161 LEU162 GLN163 ASN164 GLN165 LYS166 LYS167 VAL168 GLU169 PHE170 LYS171 ILE172 ASP173 ILE174 VAL175
Unit 5 VAL44 TRP45 LYS46 ASP47 ALA48 GLU49 THR50 THR51 LEU52 PHE53 CYS54 ALA55 SER56 ASP57 ALA58 LYS59 ALA60 TYR61 GLU62 THR63 GLU64 LYS65 HIS66 ASN67 VAL68 TRP69 ALA70 THR71 HIS72 ALA73 CYS74 VAL75 PRO76 THR77 ASP78 PRO79 ASN80 PRO81 GLN82 GLU83 ILE84 HIS85 LEU86 GLU87 ASN88 VAL89 THR90 GLU91 GLU92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASN99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 THR106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 PRO124 LEU125 CYS126 VAL127 THR128 LEU129 GLN130 CYS131 THR132 ASN133 VAL134 THR135 ASN136 ASN137 ILE138 THR139 ASP140 ASP149 MET150 ARG151 GLY152 GLU153 LEU154 LYS155 ASN156 CYS157 SER158 PHE159 ASN160 MET161 THR162 THR163 GLU164 LEU165 ARG166 ASP167 LYS168 LYS169 GLN170 LYS171 VAL172 TYR173 SER174 LEU175 PHE176 TYR177 ARG178 TYR191 ARG192 LEU193 ILE194 ASN195 CYS196 ASN197 THR198 SER199 ALA200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 GLU211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 LYS229 ASP230 LYS231 LYS232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 PRO240 SER241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 LYS252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 VAL270 MET271 ILE272 ARG273 SER274 GLU275 ASN276 ILE277 THR278 ASN279 ASN280 ALA281 LYS282 ASN283 ILE284 LEU285 VAL286 GLN287 PHE288 ASN289 THR290 PRO291 VAL292 GLN293 ILE294 ASN295 CYS296 THR297 ARG298 PRO299 ASN300 ASN301 ASN302 THR303 ARG304 LYS305 SER306 ILE307 ARG308 ILE309 GLY311 PRO312 GLY313 GLN314 ALA315 PHE316 TYR317 ALA318 THR319 GLY320 ASP321 ILE322 ILE323 GLY324 ASP325 ILE326 ARG327 GLN328 ALA329 HIS330 CYS331 ASN332 VAL333 SER334 LYS335 ALA336 THR337 TRP338 ASN339 GLU340 THR341 LEU342 GLY343 LYS344 VAL345 VAL346 LYS347 GLN348 LEU349 ARG350 LYS351 HIS352 PHE353 GLY354 ASN355 ASN356 THR357 ILE358 ILE359 ARG360 PHE361 ALA362 ASN363 SER364 SER365 GLY366 GLY367 ASP368 LEU369 GLU370 VAL371 THR372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 GLY379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 THR387 SER388 GLY389 LEU390 PHE391 ASN392 SER393 THR394 TRP395 ILE396 SER397 ASN398 THR399 SER400 VAL401 ASN411 ASP412 SER413 ILE414 THR415 LEU416 PRO417 CYS418 ARG419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 ARG429 ILE430 GLY431 GLN432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 GLN440 GLY441 VAL442 ILE443 ARG444 CYS445 VAL446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 ILE453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 SER460 THR461 ASN462 SER463 THR464 THR465 GLU466 THR467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 LYS490 ILE491 GLU492 PRO493
Unit 6 VAL44 TRP45 LYS46 ASP47 ALA48 GLU49 THR50 THR51 LEU52 PHE53 CYS54 ALA55 SER56 ASP57 ALA58 LYS59 ALA60 TYR61 GLU62 THR63 GLU64 LYS65 HIS66 ASN67 VAL68 TRP69 ALA70 THR71 HIS72 ALA73 CYS74 VAL75 PRO76 THR77 ASP78 PRO79 ASN80 PRO81 GLN82 GLU83 ILE84 HIS85 LEU86 GLU87 ASN88 VAL89 THR90 GLU91 GLU92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASN99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 THR106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 PRO124 LEU125 CYS126 VAL127 THR128 LEU129 GLN130 CYS131 THR132 ASN133 VAL134 THR135 ASN136 ASN137 ILE138 THR139 ASP140 ASP149 MET150 ARG151 GLY152 GLU153 LEU154 LYS155 ASN156 CYS157 SER158 PHE159 ASN160 MET161 THR162 THR163 GLU164 LEU165 ARG166 ASP167 LYS168 LYS169 GLN170 LYS171 VAL172 TYR173 SER174 LEU175 PHE176 TYR177 ARG178 TYR191 ARG192 LEU193 ILE194 ASN195 CYS196 ASN197 THR198 SER199 ALA200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 GLU211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 LYS229 ASP230 LYS231 LYS232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 PRO240 SER241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 LYS252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 VAL270 MET271 ILE272 ARG273 SER274 GLU275 ASN276 ILE277 THR278 ASN279 ASN280 ALA281 LYS282 ASN283 ILE284 LEU285 VAL286 GLN287 PHE288 ASN289 THR290 PRO291 VAL292 GLN293 ILE294 ASN295 CYS296 THR297 ARG298 PRO299 ASN300 ASN301 ASN302 THR303 ARG304 LYS305 SER306 ILE307 ARG308 ILE309 GLY311 PRO312 GLY313 GLN314 ALA315 PHE316 TYR317 ALA318 THR319 GLY320 ASP321 ILE322 ILE323 GLY324 ASP325 ILE326 ARG327 GLN328 ALA329 HIS330 CYS331 ASN332 VAL333 SER334 LYS335 ALA336 THR337 TRP338 ASN339 GLU340 THR341 LEU342 GLY343 LYS344 VAL345 VAL346 LYS347 GLN348 LEU349 ARG350 LYS351 HIS352 PHE353 GLY354 ASN355 ASN356 THR357 ILE358 ILE359 ARG360 PHE361 ALA362 ASN363 SER364 SER365 GLY366 GLY367 ASP368 LEU369 GLU370 VAL371 THR372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 GLY379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 THR387 SER388 GLY389 LEU390 PHE391 ASN392 SER393 THR394 TRP395 ILE396 SER397 ASN398 THR399 SER400 VAL401 ASN411 ASP412 SER413 ILE414 THR415 LEU416 PRO417 CYS418 ARG419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 ARG429 ILE430 GLY431 GLN432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 GLN440 GLY441 VAL442 ILE443 ARG444 CYS445 VAL446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 ILE453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 SER460 THR461 ASN462 SER463 THR464 THR465 GLU466 THR467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 LYS490 ILE491 GLU492 PRO493

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany