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Sequence, Chains, Asymmetric and Biological Units

Title CORE MODEL OF THE MOUSE MAMMARY TUMOR VIRUS INTASOME
Keywords INTEGRATION, RETROVIRUS, INTEGRASE, INTASOME, VIRAL PROTEIN
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3JCA     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INTEGRASE  A 262 2096 0
2  Protein   INTEGRASE  B 253 2031 0
3  Protein   INTEGRASE  C 49 393 0
4  Protein   INTEGRASE  D 49 393 0
5  Protein   INTEGRASE  E 262 2096 0
6  Protein   INTEGRASE  F 253 2031 0
7  Protein   INTEGRASE  G 49 393 0
8  Protein   INTEGRASE  H 49 393 0
9  Other macromolecule   5'-D(*AP*AP*TP*GP*CP*CP*GP*CP*AP*GP*TP*CP*GP*GP*C *CP*CP*TP*G)-3'  I 21 425 0
10  Other macromolecule   5'-D(*CP*AP*GP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*TP*G *CP*A)-3'  J 19 393 0
11  Other macromolecule   5'-D(*AP*AP*TP*GP*CP*CP*GP*CP*AP*GP*TP*CP*GP*GP*C *CP*CP*TP*G)-3'  K 21 425 0
12  Other macromolecule   5'-D(*CP*AP*GP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*TP*G *CP*A)-3'  L 19 393 0
13  Ligand   INTEGRASE  A 1 0 1
14  Ligand   INTEGRASE  B 1 0 1
15  Ligand   INTEGRASE  E 1 0 1
16  Ligand   INTEGRASE  F 1 0 1
total       1310 11462 4
Proteins
Unit 1 ALA1 LEU2 GLU3 SER4 ALA5 GLN6 GLU7 SER8 HIS9 ALA10 LEU11 HIS12 HIS13 GLN14 ASN15 ALA16 ALA17 ALA18 LEU19 ARG20 PHE21 GLN22 PHE23 HIS24 ILE25 THR26 ARG27 GLU28 GLN29 ALA30 ARG31 GLU32 ILE33 VAL34 LYS35 LEU36 CYS37 PRO38 ASN39 CYS40 PRO41 HIS45 ALA46 PRO47 GLN48 LEU49 GLY50 VAL51 ASN52 PRO53 ARG54 GLY55 LEU56 LYS57 PRO58 ARG59 VAL60 LEU61 TRP62 GLN63 MET64 ASP65 VAL66 THR67 HIS68 VAL69 SER70 GLU71 PHE72 GLY73 LYS74 LEU75 LYS76 TYR77 VAL78 HIS79 VAL80 THR81 VAL82 ASP83 THR84 TYR85 SER86 HIS87 PHE88 THR89 PHE90 ALA91 THR92 ALA93 ARG94 THR95 GLY96 GLU97 ALA98 THR99 LYS100 ASP101 VAL102 LEU103 GLN104 HIS105 LEU106 ALA107 GLN108 SER109 PHE110 ALA111 TYR112 MET113 GLY114 ILE115 PRO116 GLN117 LYS118 ILE119 LYS120 THR121 ASP122 ASN123 ALA124 PRO125 ALA126 TYR127 VAL128 SER129 ARG130 SER131 ILE132 GLN133 GLU134 PHE135 LEU136 ALA137 ARG138 TRP139 LYS140 ILE141 SER142 HIS143 VAL144 THR145 GLY146 ILE147 PRO148 TYR149 ASN150 PRO151 GLN152 GLY153 GLN154 ALA155 ILE156 VAL157 GLU158 ARG159 THR160 HIS161 GLN162 ASN163 ILE164 LYS165 ALA166 GLN167 LEU168 ASN169 LYS170 LEU171 GLN172 LYS173 ALA174 GLY175 LYS176 TYR177 TYR178 THR179 PRO180 HIS181 HIS182 LEU183 LEU184 ALA185 HIS186 ALA187 LEU188 PHE189 VAL190 LEU191 ASN192 HIS193 VAL194 ASN195 MET196 ASP197 ASN198 GLN199 GLY200 HIS201 THR202 ALA203 ALA204 GLU205 ARG206 HIS207 TRP208 GLY209 PRO210 ILE211 SER212 ALA213 ASP214 PRO215 LYS216 PRO217 MET218 VAL219 MET220 TRP221 LYS222 ASP223 LEU224 LEU225 THR226 GLY227 SER228 TRP229 LYS230 GLY231 PRO232 ASP233 VAL234 LEU235 ILE236 THR237 ALA238 GLY239 ARG240 GLY241 TYR242 ALA243 CYS244 VAL245 PHE246 PRO247 GLN248 ASP249 ALA250 GLU251 SER252 PRO253 ILE254 TRP255 VAL256 PRO257 ASP258 ARG259 PHE260 ILE261 ARG262 PRO263 PHE264 THR265
Unit 2 ALA1 LEU2 GLU3 SER4 ALA5 GLN6 GLU7 SER8 HIS9 ALA10 LEU11 HIS12 HIS13 GLN14 ASN15 ALA16 ALA17 ALA18 LEU19 ARG20 PHE21 GLN22 PHE23 HIS24 ILE25 THR26 ARG27 GLU28 GLN29 ALA30 ARG31 GLU32 ILE33 VAL34 LYS35 LEU36 CYS37 PRO38 ASN39 CYS40 PRO41 ARG54 GLY55 LEU56 LYS57 PRO58 ARG59 VAL60 LEU61 TRP62 GLN63 MET64 ASP65 VAL66 THR67 HIS68 VAL69 SER70 GLU71 PHE72 GLY73 LYS74 LEU75 LYS76 TYR77 VAL78 HIS79 VAL80 THR81 VAL82 ASP83 THR84 TYR85 SER86 HIS87 PHE88 THR89 PHE90 ALA91 THR92 ALA93 ARG94 THR95 GLY96 GLU97 ALA98 THR99 LYS100 ASP101 VAL102 LEU103 GLN104 HIS105 LEU106 ALA107 GLN108 SER109 PHE110 ALA111 TYR112 MET113 GLY114 ILE115 PRO116 GLN117 LYS118 ILE119 LYS120 THR121 ASP122 ASN123 ALA124 PRO125 ALA126 TYR127 VAL128 SER129 ARG130 SER131 ILE132 GLN133 GLU134 PHE135 LEU136 ALA137 ARG138 TRP139 LYS140 ILE141 SER142 HIS143 VAL144 THR145 GLY146 ILE147 PRO148 TYR149 ASN150 PRO151 GLN152 GLY153 GLN154 ALA155 ILE156 VAL157 GLU158 ARG159 THR160 HIS161 GLN162 ASN163 ILE164 LYS165 ALA166 GLN167 LEU168 ASN169 LYS170 LEU171 GLN172 LYS173 ALA174 GLY175 LYS176 TYR177 TYR178 THR179 PRO180 HIS181 HIS182 LEU183 LEU184 ALA185 HIS186 ALA187 LEU188 PHE189 VAL190 LEU191 ASN192 HIS193 VAL194 ASN195 MET196 ASP197 ASN198 GLN199 GLY200 HIS201 THR202 ALA203 ALA204 GLU205 ARG206 HIS207 TRP208 GLY209 PRO210 ILE211 SER212 ALA213 ASP214 PRO215 LYS216 PRO217 MET218 VAL219 MET220 TRP221 LYS222 ASP223 LEU224 LEU225 THR226 GLY227 SER228 TRP229 LYS230 GLY231 PRO232 ASP233 VAL234 LEU235 ILE236 THR237 ALA238 GLY239 ARG240 GLY241 TYR242 ALA243 CYS244 VAL245 PHE246 PRO247 GLN248 ASP249 ALA250 GLU251 SER252 PRO253 ILE254 TRP255 VAL256 PRO257 ASP258 ARG259 PHE260 ILE261 ARG262 PRO263 PHE264 THR265
Unit 3 PRO217 MET218 VAL219 MET220 TRP221 LYS222 ASP223 LEU224 LEU225 THR226 GLY227 SER228 TRP229 LYS230 GLY231 PRO232 ASP233 VAL234 LEU235 ILE236 THR237 ALA238 GLY239 ARG240 GLY241 TYR242 ALA243 CYS244 VAL245 PHE246 PRO247 GLN248 ASP249 ALA250 GLU251 SER252 PRO253 ILE254 TRP255 VAL256 PRO257 ASP258 ARG259 PHE260 ILE261 ARG262 PRO263 PHE264 THR265
Unit 4 PRO217 MET218 VAL219 MET220 TRP221 LYS222 ASP223 LEU224 LEU225 THR226 GLY227 SER228 TRP229 LYS230 GLY231 PRO232 ASP233 VAL234 LEU235 ILE236 THR237 ALA238 GLY239 ARG240 GLY241 TYR242 ALA243 CYS244 VAL245 PHE246 PRO247 GLN248 ASP249 ALA250 GLU251 SER252 PRO253 ILE254 TRP255 VAL256 PRO257 ASP258 ARG259 PHE260 ILE261 ARG262 PRO263 PHE264 THR265
Unit 5 ALA1 LEU2 GLU3 SER4 ALA5 GLN6 GLU7 SER8 HIS9 ALA10 LEU11 HIS12 HIS13 GLN14 ASN15 ALA16 ALA17 ALA18 LEU19 ARG20 PHE21 GLN22 PHE23 HIS24 ILE25 THR26 ARG27 GLU28 GLN29 ALA30 ARG31 GLU32 ILE33 VAL34 LYS35 LEU36 CYS37 PRO38 ASN39 CYS40 PRO41 HIS45 ALA46 PRO47 GLN48 LEU49 GLY50 VAL51 ASN52 PRO53 ARG54 GLY55 LEU56 LYS57 PRO58 ARG59 VAL60 LEU61 TRP62 GLN63 MET64 ASP65 VAL66 THR67 HIS68 VAL69 SER70 GLU71 PHE72 GLY73 LYS74 LEU75 LYS76 TYR77 VAL78 HIS79 VAL80 THR81 VAL82 ASP83 THR84 TYR85 SER86 HIS87 PHE88 THR89 PHE90 ALA91 THR92 ALA93 ARG94 THR95 GLY96 GLU97 ALA98 THR99 LYS100 ASP101 VAL102 LEU103 GLN104 HIS105 LEU106 ALA107 GLN108 SER109 PHE110 ALA111 TYR112 MET113 GLY114 ILE115 PRO116 GLN117 LYS118 ILE119 LYS120 THR121 ASP122 ASN123 ALA124 PRO125 ALA126 TYR127 VAL128 SER129 ARG130 SER131 ILE132 GLN133 GLU134 PHE135 LEU136 ALA137 ARG138 TRP139 LYS140 ILE141 SER142 HIS143 VAL144 THR145 GLY146 ILE147 PRO148 TYR149 ASN150 PRO151 GLN152 GLY153 GLN154 ALA155 ILE156 VAL157 GLU158 ARG159 THR160 HIS161 GLN162 ASN163 ILE164 LYS165 ALA166 GLN167 LEU168 ASN169 LYS170 LEU171 GLN172 LYS173 ALA174 GLY175 LYS176 TYR177 TYR178 THR179 PRO180 HIS181 HIS182 LEU183 LEU184 ALA185 HIS186 ALA187 LEU188 PHE189 VAL190 LEU191 ASN192 HIS193 VAL194 ASN195 MET196 ASP197 ASN198 GLN199 GLY200 HIS201 THR202 ALA203 ALA204 GLU205 ARG206 HIS207 TRP208 GLY209 PRO210 ILE211 SER212 ALA213 ASP214 PRO215 LYS216 PRO217 MET218 VAL219 MET220 TRP221 LYS222 ASP223 LEU224 LEU225 THR226 GLY227 SER228 TRP229 LYS230 GLY231 PRO232 ASP233 VAL234 LEU235 ILE236 THR237 ALA238 GLY239 ARG240 GLY241 TYR242 ALA243 CYS244 VAL245 PHE246 PRO247 GLN248 ASP249 ALA250 GLU251 SER252 PRO253 ILE254 TRP255 VAL256 PRO257 ASP258 ARG259 PHE260 ILE261 ARG262 PRO263 PHE264 THR265
Unit 6 ALA1 LEU2 GLU3 SER4 ALA5 GLN6 GLU7 SER8 HIS9 ALA10 LEU11 HIS12 HIS13 GLN14 ASN15 ALA16 ALA17 ALA18 LEU19 ARG20 PHE21 GLN22 PHE23 HIS24 ILE25 THR26 ARG27 GLU28 GLN29 ALA30 ARG31 GLU32 ILE33 VAL34 LYS35 LEU36 CYS37 PRO38 ASN39 CYS40 PRO41 ARG54 GLY55 LEU56 LYS57 PRO58 ARG59 VAL60 LEU61 TRP62 GLN63 MET64 ASP65 VAL66 THR67 HIS68 VAL69 SER70 GLU71 PHE72 GLY73 LYS74 LEU75 LYS76 TYR77 VAL78 HIS79 VAL80 THR81 VAL82 ASP83 THR84 TYR85 SER86 HIS87 PHE88 THR89 PHE90 ALA91 THR92 ALA93 ARG94 THR95 GLY96 GLU97 ALA98 THR99 LYS100 ASP101 VAL102 LEU103 GLN104 HIS105 LEU106 ALA107 GLN108 SER109 PHE110 ALA111 TYR112 MET113 GLY114 ILE115 PRO116 GLN117 LYS118 ILE119 LYS120 THR121 ASP122 ASN123 ALA124 PRO125 ALA126 TYR127 VAL128 SER129 ARG130 SER131 ILE132 GLN133 GLU134 PHE135 LEU136 ALA137 ARG138 TRP139 LYS140 ILE141 SER142 HIS143 VAL144 THR145 GLY146 ILE147 PRO148 TYR149 ASN150 PRO151 GLN152 GLY153 GLN154 ALA155 ILE156 VAL157 GLU158 ARG159 THR160 HIS161 GLN162 ASN163 ILE164 LYS165 ALA166 GLN167 LEU168 ASN169 LYS170 LEU171 GLN172 LYS173 ALA174 GLY175 LYS176 TYR177 TYR178 THR179 PRO180 HIS181 HIS182 LEU183 LEU184 ALA185 HIS186 ALA187 LEU188 PHE189 VAL190 LEU191 ASN192 HIS193 VAL194 ASN195 MET196 ASP197 ASN198 GLN199 GLY200 HIS201 THR202 ALA203 ALA204 GLU205 ARG206 HIS207 TRP208 GLY209 PRO210 ILE211 SER212 ALA213 ASP214 PRO215 LYS216 PRO217 MET218 VAL219 MET220 TRP221 LYS222 ASP223 LEU224 LEU225 THR226 GLY227 SER228 TRP229 LYS230 GLY231 PRO232 ASP233 VAL234 LEU235 ILE236 THR237 ALA238 GLY239 ARG240 GLY241 TYR242 ALA243 CYS244 VAL245 PHE246 PRO247 GLN248 ASP249 ALA250 GLU251 SER252 PRO253 ILE254 TRP255 VAL256 PRO257 ASP258 ARG259 PHE260 ILE261 ARG262 PRO263 PHE264 THR265
Unit 7 PRO217 MET218 VAL219 MET220 TRP221 LYS222 ASP223 LEU224 LEU225 THR226 GLY227 SER228 TRP229 LYS230 GLY231 PRO232 ASP233 VAL234 LEU235 ILE236 THR237 ALA238 GLY239 ARG240 GLY241 TYR242 ALA243 CYS244 VAL245 PHE246 PRO247 GLN248 ASP249 ALA250 GLU251 SER252 PRO253 ILE254 TRP255 VAL256 PRO257 ASP258 ARG259 PHE260 ILE261 ARG262 PRO263 PHE264 THR265
Unit 8 PRO217 MET218 VAL219 MET220 TRP221 LYS222 ASP223 LEU224 LEU225 THR226 GLY227 SER228 TRP229 LYS230 GLY231 PRO232 ASP233 VAL234 LEU235 ILE236 THR237 ALA238 GLY239 ARG240 GLY241 TYR242 ALA243 CYS244 VAL245 PHE246 PRO247 GLN248 ASP249 ALA250 GLU251 SER252 PRO253 ILE254 TRP255 VAL256 PRO257 ASP258 ARG259 PHE260 ILE261 ARG262 PRO263 PHE264 THR265
Other macromolecules
Unit 9 DA1 DA2 DT3 DG4 DC5 DC6 DG7 DC8 DA9 DG10 DT11 DC12 DG13 DG14 DC15 DC16 DG17 DA18 DC19 DC20 DT21
Unit 10 DA2 DG3 DG4 DT5 DC6 DG7 DG8 DC9 DC10 DG11 DA12 DC13 DT14 DG15 DC16 DG17 DG18 DC19 DA20
Unit 11 DA1 DA2 DT3 DG4 DC5 DC6 DG7 DC8 DA9 DG10 DT11 DC12 DG13 DG14 DC15 DC16 DG17 DA18 DC19 DC20 DT21
Unit 12 DA2 DG3 DG4 DT5 DC6 DG7 DG8 DC9 DC10 DG11 DA12 DC13 DT14 DG15 DC16 DG17 DG18 DC19 DA20
Ligands
Unit 13 ZN500
Unit 14 ZN500
Unit 15 ZN500
Unit 16 ZN500
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany