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Sequence, Chains, Asymmetric and Biological Units

Title IN SITU STRUCTURES OF THE SEGMENTED GENOME AND RNA POLYMERAS INSIDE A DSRNA VIRUS
Keywords DSRNA GENOME ORGANIZATION, VIRAL POLYMERASE, TRANSFERASE-VIR PROTEIN-RNA COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3JB7     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CPV RNA-DEPENDENT RNA POLYMERASE  A 1198 9561 0
2  Protein   VIRAL STRUCTURAL PROTEIN 4  B 498 3985 0
3  Protein   VP1 CSP  C 21 170 0
4  RNA    t 6 138 0
5  RNA    m 5 100 0
6  Protein   VP1 CSP  D 16 129 0
7  Ligand   CPV RNA-DEPENDENT RNA POLYMERASE  A 2 0 61
8  Ligand   VIRAL STRUCTURAL PROTEIN 4  B 1 0 32
total       1747 14083 93
Proteins
Unit 1 THR5 LYS6 LEU7 HIS8 ASN9 THR10 ILE11 PHE12 SER13 GLU14 THR15 ARG16 LYS17 PHE18 THR19 ARG20 GLU21 SER22 PHE23 LYS24 GLU25 ILE26 GLU27 HIS28 LEU29 THR30 ALA31 ARG32 LEU33 ALA34 ASN35 ASP36 ARG37 VAL38 ALA39 ARG40 HIS41 ASP42 PHE43 LEU44 PHE45 ASN46 THR47 SER48 ILE49 VAL50 LEU51 ILE52 SER53 ASP54 TYR55 SER56 GLY57 GLU58 ASP59 SER60 ASN61 GLY62 ASN63 GLN64 LEU65 GLN66 ALA67 THR68 ILE69 THR70 ILE71 PRO72 ASN73 GLU74 ILE75 ILE76 ASN77 PRO78 LYS79 GLU80 TYR81 ASP82 PRO83 SER84 ASP85 TYR86 PRO87 LEU88 ALA89 GLU90 ASP91 GLU92 SER93 PHE94 PHE95 LYS96 GLN97 GLY98 HIS99 LYS100 TYR101 ASP102 TYR103 LEU104 VAL105 THR106 PHE107 ARG108 ALA109 GLY110 SER111 LEU112 THR113 ASN114 THR115 TYR116 GLU117 PRO118 LYS119 THR120 LYS121 MET122 TYR123 LYS124 LEU125 HIS126 ALA127 ALA128 LEU129 ASP130 LYS131 LEU132 MET133 HIS134 VAL135 LYS136 GLN137 ARG138 LYS139 SER140 ARG141 PHE142 ALA143 ASP144 LEU145 TRP146 ARG147 GLU148 LEU149 CYS150 ALA151 VAL152 ILE153 ALA154 SER155 LEU156 ASP157 VAL158 TRP159 TYR160 GLN161 THR162 THR163 ASN164 TYR165 PRO166 LEU167 ARG168 THR169 TYR170 VAL171 LYS172 LEU173 LEU174 PHE175 HIS176 LYS177 GLY178 ASP179 GLU180 PHE181 PRO182 PHE183 TYR184 GLU185 SER186 PRO187 SER188 GLN189 ASP190 ARG191 ILE192 ILE193 PHE194 ASN195 ASP196 LYS197 SER198 VAL199 ALA200 SER201 ILE202 LEU203 PRO204 THR205 PHE206 VAL207 TYR208 THR209 CYS210 CYS211 GLN212 VAL213 GLY214 THR215 ALA216 ILE217 MET218 SER219 GLY220 ILE221 LEU222 THR223 HIS224 VAL225 GLU226 SER227 ILE228 VAL229 ALA230 MET231 ASN232 HIS233 PHE234 LEU235 HIS236 CYS237 ALA238 LYS239 ASP240 SER241 TYR242 ILE243 ASP244 GLU245 LYS246 LEU247 LYS248 ILE249 LYS250 GLY251 ILE252 GLY253 ARG254 SER255 TRP256 TYR257 GLN258 GLU259 ALA260 LEU261 HIS262 ASN263 VAL264 CYS265 GLN266 ALA267 THR268 VAL269 PRO270 VAL271 TRP272 SER273 GLN274 PHE275 ASN276 GLU277 VAL278 ILE279 GLY280 HIS281 ARG282 THR283 LYS284 SER285 THR286 SER287 GLU288 PRO289 HIS290 PHE291 VAL292 SER293 SER294 THR295 PHE296 ILE297 SER298 LEU299 ARG300 ALA301 LYS302 ARG303 ALA304 GLU305 LEU306 LEU307 TYR308 PRO309 GLU310 PHE311 ASN312 ALA313 TYR314 ILE315 ASN316 ARG317 ALA318 ILE319 GLN320 LEU321 SER322 LYS323 THR324 GLN325 ASN326 ASP327 VAL328 ALA329 ASN330 TYR331 TYR332 ALA333 ALA334 CYS335 ARG336 ALA337 MET338 THR339 ASN340 ASP341 GLY342 THR343 PHE344 LEU345 ALA346 THR347 LEU348 THR349 GLU350 LEU351 SER352 LEU353 ASP354 ALA355 ALA356 VAL357 PHE358 PRO359 ARG360 ILE361 GLU362 GLN363 HIS364 LEU365 VAL366 THR367 ARG368 PRO369 ALA370 VAL371 LEU372 MET373 SER374 ASN375 THR376 ARG377 HIS378 GLU379 SER380 LEU381 LYS382 GLN383 LYS384 TYR385 THR386 ASN387 GLY388 VAL389 GLY390 SER391 ILE392 ALA393 GLN394 SER395 TYR396 LEU397 SER398 SER399 PHE400 THR401 ASP402 GLU403 ILE404 ALA405 LYS406 ARG407 VAL408 ASN409 GLY410 ARG411 HIS412 HIS413 ASP414 GLU415 ALA416 TRP417 LEU418 ASN419 PHE420 LEU421 THR422 THR423 SER424 SER425 PRO426 GLY427 ARG428 LYS429 LEU430 THR431 GLU432 ILE433 GLU434 LYS435 LEU436 GLU437 VAL438 GLY439 GLY440 ASP441 VAL442 ALA443 ALA444 TRP445 SER446 ASN447 SER448 ARG449 ILE450 VAL451 MET452 GLN453 ALA454 VAL455 PHE456 ALA457 ARG458 GLU459 TYR460 ARG461 THR462 PRO463 GLU464 ARG465 ILE466 PHE467 LYS468 SER469 LEU470 LYS471 ALA472 PRO473 ILE474 LYS475 LEU476 VAL477 GLU478 ARG479 GLN480 GLN481 SER482 ASP483 ARG484 ARG485 GLN486 ARG487 ALA488 ILE489 SER490 GLY491 LEU492 ASP493 ASN494 ASP495 ARG496 LEU497 PHE498 LEU499 SER500 PHE501 MET502 PRO503 TYR504 THR505 ILE506 GLY507 LYS508 GLN509 ILE510 TYR511 GLU512 LEU513 ASN514 ASP515 ASN516 ALA517 ALA518 GLN519 GLY520 LYS521 GLN522 ALA523 GLY524 ASN525 ALA526 PHE527 ASP528 ILE529 GLY530 GLU531 MET532 LEU533 TYR534 TRP535 THR536 SER537 GLN538 ARG539 ASN540 VAL541 LEU542 LEU543 SER544 SER545 ILE546 ASP547 VAL548 ALA549 GLY550 MET551 ASP552 ALA553 SER554 VAL555 THR556 THR557 ASN558 THR559 LYS560 ASP561 ILE562 TYR563 ASN564 THR565 PHE566 VAL567 LEU568 ASP569 VAL570 ALA571 SER572 LYS573 CYS574 THR575 VAL576 PRO577 ARG578 PHE579 GLY580 PRO581 TYR582 TYR583 ALA584 LYS585 ASN586 MET587 GLU588 VAL589 PHE590 GLU591 ALA592 GLY593 ASN594 ARG595 GLN596 SER597 GLN598 VAL599 ARG600 TYR601 VAL602 ASN603 ALA604 ALA605 TRP606 GLN607 ALA608 CYS609 ALA610 LEU611 GLU612 ALA613 ALA614 ASN615 SER616 GLN617 THR618 SER619 THR620 SER621 TYR622 GLU623 SER624 GLU625 ILE626 PHE627 GLY628 GLN629 VAL630 LYS631 ASN632 ALA633 GLU634 GLY635 THR636 TYR637 PRO638 SER639 GLY640 ARG641 ALA642 ASP643 THR644 SER645 THR646 HIS647 HIS648 THR649 VAL650 LEU651 LEU652 GLN653 GLY654 LEU655 VAL656 ARG657 GLY658 ASN659 GLU660 LEU661 LYS662 ARG663 ALA664 SER665 ASP666 GLY667 LYS668 ASN669 SER670 CYS671 LEU672 ALA673 THR674 ILE675 LYS676 ILE677 LEU678 GLY679 ASP680 ASP681 ILE682 MET683 GLU684 ILE685 PHE686 GLN687 GLY688 SER689 GLU690 SER691 ASP692 THR693 TYR694 ASP695 HIS696 ALA697 VAL698 SER699 ASN700 ALA701 SER702 ILE703 LEU704 ASN705 GLU706 SER707 GLY708 PHE709 ALA710 THR711 THR712 ALA713 GLU714 LEU715 SER716 GLN717 ASN718 SER719 ILE720 VAL721 LEU722 LEU723 GLN724 GLN725 LEU726 VAL727 VAL728 ASN729 GLY730 THR731 PHE732 TRP733 GLY734 PHE735 ALA736 ASP737 ARG738 ILE739 SER740 LEU741 TRP742 THR743 ARG744 GLU745 ASP746 THR747 LYS748 ASP749 ILE750 GLY751 ARG752 LEU753 ASN754 LEU755 ALA756 MET757 MET758 GLU759 LEU760 ASN761 ALA762 LEU763 ILE764 ASP765 ASP766 LEU767 VAL768 PHE769 ARG770 VAL771 ARG772 ARG773 PRO774 GLU775 GLY776 LEU777 LYS778 MET779 LEU780 GLY781 PHE782 PHE783 CYS784 GLY785 ALA786 ILE787 CYS788 LEU789 ARG790 ARG791 PHE792 THR793 LEU794 SER795 VAL796 ASP797 ASN798 LYS799 LEU800 TYR801 ASP802 SER803 THR804 TYR805 ASN806 ASN807 LEU808 SER809 LYS810 TYR811 MET812 THR813 LEU814 THR815 LYS816 TYR817 ASP818 LYS819 ASN820 PRO821 ASP822 SER823 ASP824 SER825 THR826 LEU827 MET828 SER829 LEU830 ILE831 LEU832 PRO833 LEU834 ALA835 TRP836 LEU837 PHE838 MET839 PRO840 ARG841 GLY842 GLY843 GLU844 TYR845 PRO846 ALA847 TYR848 PRO849 PHE850 GLU851 ARG852 ARG853 ASP854 GLY855 THR856 PHE857 THR858 GLU859 ASP860 GLU861 SER862 MET863 PHE864 THR865 ALA866 ARG867 GLY868 ALA869 TYR870 LYS871 ARG872 ARG873 LEU874 LEU875 TYR876 ASP877 VAL878 SER879 ASN880 ILE881 GLY882 GLU883 MET884 ILE885 GLN886 GLN887 ASN888 SER889 MET890 ALA891 LEU892 ASP893 ASP894 ASP895 LEU896 LEU897 HIS898 GLU899 TYR900 GLY901 PHE902 THR903 GLY904 ALA905 LEU906 LEU907 LEU908 ILE909 ASP910 LEU911 ASN912 ILE913 LEU914 ASP915 LEU916 ILE917 ASP918 GLU919 VAL920 LYS921 LYS922 GLU923 ASP924 ILE925 SER926 PRO927 VAL928 LYS929 VAL930 SER931 GLU932 LEU933 ALA934 THR935 SER936 LEU937 GLU938 GLN939 LEU940 GLY941 LYS942 LEU943 GLY944 GLU945 ARG946 GLU947 LYS948 SER949 ARG950 ARG951 ALA952 ALA953 SER954 ASP955 LEU956 LYS957 ILE958 ARG959 GLY960 HIS961 ALA962 LEU963 SER964 ASN965 ASP966 ILE967 VAL968 TYR969 GLY970 TYR971 GLY972 LEU973 GLN974 GLU975 LYS976 ILE977 GLN978 LYS979 SER980 ALA981 MET982 ALA983 THR984 LYS985 GLU986 THR987 THR988 VAL989 GLN990 SER991 LYS992 ARG993 VAL994 SER995 SER996 ARG997 LEU998 HIS999 ASP1000 VAL1001 ILE1002 VAL1003 ALA1004 LYS1005 ARG1006 ASP1007 TYR1008 LYS1009 ILE1010 SER1011 THR1012 ILE1013 PRO1014 ALA1015 ASP1016 ALA1017 LEU1018 HIS1019 LEU1020 HIS1021 GLU1022 PHE1023 GLU1024 VAL1025 GLU1026 ASP1027 VAL1028 THR1029 VAL1030 ASP1031 LEU1032 LEU1033 PRO1034 HIS1035 ALA1036 LYS1037 HIS1038 THR1039 SER1040 TYR1041 SER1042 SER1043 LEU1044 ALA1045 TYR1046 ASN1047 MET1048 SER1049 PHE1050 GLY1051 SER1052 ASP1053 GLY1054 TRP1055 PHE1056 ALA1057 PHE1058 ALA1059 LEU1060 LEU1061 GLY1062 GLY1063 LEU1064 ASP1065 ARG1066 SER1067 ALA1068 ASN1069 LEU1070 LEU1071 ARG1072 LEU1073 ASP1074 VAL1075 ALA1076 SER1077 ILE1078 ARG1079 GLY1080 PRO1090 VAL1091 PHE1092 LYS1093 GLN1094 GLY1095 TYR1096 LYS1097 ILE1098 TYR1099 LYS1100 SER1101 ASP1102 ALA1103 THR1104 LEU1105 LEU1106 ASN1107 ASP1108 PHE1109 PHE1110 THR1111 ALA1112 ILE1113 SER1114 ALA1115 GLY1116 PRO1117 LYS1118 GLU1119 GLN1120 GLY1121 ILE1122 LEU1123 LEU1124 ARG1125 ALA1126 PHE1127 ALA1128 TYR1129 TYR1130 SER1131 LEU1132 TYR1133 GLY1134 ASN1135 VAL1136 GLU1137 TYR1138 HIS1139 TYR1140 VAL1141 LEU1142 SER1143 PRO1144 ARG1145 GLN1146 LEU1147 PHE1148 PHE1149 LEU1150 SER1151 ASP1152 ASN1153 PRO1154 VAL1155 SER1156 ALA1157 GLU1158 ARG1159 LEU1160 VAL1161 ARG1162 ILE1163 PRO1164 PRO1165 LYS1166 TYR1167 TYR1168 VAL1169 SER1170 THR1171 GLN1172 CYS1173 ARG1174 ALA1175 LEU1176 TYR1177 ASN1178 ILE1179 PHE1180 SER1181 TYR1182 LEU1183 HIS1184 ILE1185 LEU1186 ARG1187 SER1188 ILE1189 ALA1190 ASN1191 ASN1192 ARG1193 GLY1194 LYS1195 ARG1196 LEU1197 LYS1198 MET1199 VAL1200 LEU1201 HIS1202 PRO1203 GLY1204 LEU1205 ILE1206 ALA1207 TYR1208 VAL1209 ARG1210 GLY1211
Unit 2 PHE2 ALA3 ILE4 ASP5 PRO6 LEU7 LYS8 HIS9 SER10 LYS11 LEU12 TYR13 GLU14 GLU15 TYR16 GLY17 LEU18 TYR19 LEU20 ARG21 PRO22 HIS23 ALA40 PRO41 THR42 ILE43 ARG44 SER45 ILE46 LYS47 TYR48 ALA49 SER50 LEU51 ILE52 HIS53 SER54 MET55 LEU56 ALA57 LYS58 HIS59 ALA60 ALA61 ARG62 HIS63 ASN64 GLY65 THR66 LEU67 ILE68 ASN69 PRO70 ARG71 MET72 TYR73 ALA74 ASP75 MET76 ILE77 THR78 LEU79 GLY80 ASN81 THR82 LYS83 VAL84 THR85 ASP131 ILE132 VAL133 THR134 TYR135 LYS136 ALA137 LEU138 THR139 GLU140 MET141 SER142 THR143 LEU144 ILE145 GLU146 SER147 PHE148 ARG149 LEU150 PRO151 SER152 GLY153 LEU154 ALA155 LEU156 ILE157 ILE158 PHE159 ASP160 ASP161 GLU162 LYS163 TYR164 GLN165 SER166 LEU167 ILE168 PRO169 ASN170 TYR171 ILE172 ASN173 GLN174 LEU175 ILE176 ALA177 TYR178 THR179 GLN180 PRO181 HIS182 ILE183 ILE184 PRO185 THR186 TRP187 GLN188 GLY189 ILE190 ALA191 ASP192 PHE193 SER194 ASP195 THR196 TYR197 LEU198 ARG199 SER200 TYR201 PHE202 LYS203 ARG204 PRO205 PHE206 GLU207 LEU208 THR209 ALA210 SER211 ASN212 LEU213 ALA214 ALA215 PRO216 GLN217 LYS218 TYR219 ASN220 LEU221 SER222 PRO223 MET224 THR225 ARG226 SER227 ILE228 PHE229 ASN230 ASN231 THR232 GLY233 ARG234 GLU235 ASP236 ALA237 VAL238 ILE239 ARG240 LYS241 LEU242 TYR243 GLY244 TYR245 GLY246 GLU247 TYR248 VAL249 PHE250 ILE251 ARG252 TYR253 GLU254 GLY255 CYS256 LEU257 ILE258 THR259 TRP260 THR261 GLY262 ILE263 TYR264 GLY265 GLU266 VAL267 THR268 MET269 MET270 VAL271 ASN272 LEU273 SER274 LYS275 ARG276 ASP277 LEU278 GLY279 LEU280 ASP281 VAL282 GLY283 ASP284 ASP285 TYR286 LEU287 LYS288 GLU289 TYR290 LYS291 LYS292 LEU293 LEU294 PHE295 TYR296 GLY297 VAL298 ILE299 THR300 ASP301 ALA302 ILE303 PRO304 SER305 GLY306 ILE307 SER308 ALA309 ARG310 SER311 THR312 ILE313 MET314 LYS315 ILE316 SER317 PRO318 HIS319 LYS320 MET321 MET322 ASN323 PRO324 SER325 GLY326 GLY327 ALA328 LEU329 ALA330 VAL331 LEU332 SER333 LYS334 PHE335 LEU336 GLU337 ALA338 VAL339 VAL340 SER341 THR342 ASN343 VAL344 ILE345 ASN346 ALA347 THR348 LEU349 VAL350 VAL351 TYR352 ALA353 GLU354 LYS355 GLY356 ALA357 GLY358 LYS359 THR360 SER361 PHE362 LEU363 SER364 THR365 TYR366 ALA367 GLU368 GLN369 LEU370 SER371 LEU372 ALA373 SER374 GLY375 GLN376 VAL377 VAL378 GLY379 HIS380 LEU381 SER382 SER383 ASP384 ALA385 TYR386 GLY387 ARG388 TRP389 LEU390 ALA391 LYS392 ASN393 LYS394 ASP395 VAL396 GLU397 GLU398 PRO399 SER400 PHE401 ALA402 TYR403 ASP404 TYR405 VAL406 LEU407 SER408 LEU409 ASP410 THR411 ASP412 ASP413 ASN414 GLU415 SER416 TYR417 TYR418 GLU419 GLN420 LYS421 ALA422 SER423 GLU424 LEU425 LEU426 ILE427 SER428 HIS429 GLY430 ILE431 SER432 GLU433 VAL434 ALA435 GLN436 TYR437 GLU438 LEU439 LEU440 SER441 VAL442 ARG443 LYS444 LYS445 ILE446 LYS447 MET448 MET449 ASP450 GLU451 MET452 ASN453 GLU454 VAL455 LEU456 ILE457 ALA458 GLN459 LEU460 GLU461 ASN462 ALA463 ASP464 THR465 HIS466 SER467 GLU468 ARG469 ASN470 PHE471 TYR472 TYR473 MET474 VAL475 SER476 THR477 GLY478 LYS479 THR480 THR481 PRO482 ARG483 THR484 LEU485 ILE486 VAL487 GLU488 GLY489 HIS490 PHE491 ASN492 ALA493 GLN494 ASP495 ALA496 THR497 ILE498 ALA499 ARG500 THR501 ASP502 THR503 THR504 VAL505 LEU506 LEU507 ARG508 THR509 ILE510 ASN511 ASP512 THR513 THR514 GLN515 ALA516 MET517 ARG518 ASP519 ARG520 GLN521 ARG522 GLY523 GLY524 VAL525 VAL526 GLN527 LEU528 PHE529 LEU530 ARG531 ASP532 THR533 TYR534 TYR535 ARG536 LEU537 LEU538 PRO539 ALA540 LEU541 HIS542 THR543 THR544 VAL545 TYR546 PRO547 PHE548 GLU549 MET550 LEU551 GLU552 SER553 ILE554 ARG555 ARG556 TRP557 LYS558 TRP559 VAL560
Unit 3 VAL114 GLN115 SER116 ARG117 THR118 ASP119 VAL120 PHE121 ASN122 GLU123 GLN124 PHE125 ALA126 ASN127 GLU128 ALA129 LEU130 HIS131 PRO132 MET133 THR134
Unit 6 PRO111 THR112 VAL113 VAL114 GLN115 SER116 ARG117 THR118 ASP119 VAL120 PHE121 ASN122 GLU123 GLN124 PHE125 ALA126
Nucleic acids
Unit 4 G0 G1 G2 G3 G4 G5
Unit 5 C1 C2 C3 C4 C5
Ligands
Unit 7 GTP1301 CTP1302
Unit 8 GTP601
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany