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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF ALPHA-1 GLYCINE RECEPTOR BY SINGLE PARTICLE ELE CRYO-MICROSCOPY, STRYCHNINE-BOUND STATE
Keywords CYS LOOP RECEPTOR, ALPHA-1 GLYCINE RECEPTOR, STRYCHNINE, SIG PROTEIN-ANTAGONIST COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3JAD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  A 337 2488 0
2  Protein   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  B 337 2488 0
3  Protein   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  C 337 2488 0
4  Protein   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  D 337 2488 0
5  Protein   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  E 337 2488 0
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    I 2 0 28
10  Ligand    J 2 0 28
11  Ligand   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  A 1 0 25
12  Ligand   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  B 1 0 25
13  Ligand   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  C 1 0 25
14  Ligand   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  D 1 0 25
15  Ligand   GLYCINE RECEPTOR SUBUNIT ALPHAZ1  E 1 0 25
total       1700 12440 265
Proteins
Unit 1 ALA25 PRO26 SER27 GLU28 PHE29 LEU30 ASP31 LYS32 LEU33 MET34 GLY35 LYS36 VAL37 SER38 GLY39 TYR40 ASP41 ALA42 ARG43 ILE44 ARG45 PRO46 ASN47 PHE48 LYS49 GLY50 PRO51 PRO52 VAL53 ASN54 VAL55 THR56 CYS57 ASN58 ILE59 PHE60 ILE61 ASN62 SER63 PHE64 GLY65 SER66 ILE67 ALA68 GLU69 THR70 THR71 MET72 ASP73 TYR74 ARG75 VAL76 ASN77 ILE78 PHE79 LEU80 ARG81 GLN82 GLN83 TRP84 ASN85 ASP86 PRO87 ARG88 LEU89 ALA90 TYR91 SER92 GLU93 TYR94 PRO95 ASP96 ASP97 SER98 LEU99 ASP100 LEU101 ASP102 PRO103 SER104 MET105 LEU106 ASP107 SER108 ILE109 TRP110 LYS111 PRO112 ASP113 LEU114 PHE115 PHE116 ALA117 ASN118 GLU119 LYS120 GLY121 ALA122 ASN123 PHE124 HIS125 GLU126 VAL127 THR128 THR129 ASP130 ASN131 LYS132 LEU133 LEU134 ARG135 ILE136 SER137 LYS138 ASN139 GLY140 ASN141 VAL142 LEU143 TYR144 SER145 ILE146 ARG147 ILE148 THR149 LEU150 VAL151 LEU152 ALA153 CYS154 PRO155 MET156 ASP157 LEU158 LYS159 ASN160 PHE161 PRO162 MET163 ASP164 VAL165 GLN166 THR167 CYS168 ILE169 MET170 GLN171 LEU172 GLU173 SER174 PHE175 GLY176 TYR177 THR178 MET179 ASN180 ASP181 LEU182 ILE183 PHE184 GLU185 TRP186 ASP187 GLU188 LYS189 GLY190 ALA191 VAL192 GLN193 VAL194 ALA195 ASP196 GLY197 LEU198 THR199 LEU200 PRO201 GLN202 PHE203 ILE204 LEU205 LYS206 GLU207 GLU208 LYS209 ASP210 LEU211 ARG212 TYR213 CYS214 THR215 LYS216 HIS217 TYR218 ASN219 THR220 GLY221 LYS222 PHE223 THR224 CYS225 ILE226 GLU227 ALA228 ARG229 PHE230 HIS231 LEU232 GLU233 ARG234 GLN235 MET236 GLY237 TYR238 TYR239 LEU240 ILE241 GLN242 MET243 TYR244 ILE245 PRO246 SER247 LEU248 LEU249 ILE250 VAL251 ILE252 LEU253 SER254 TRP255 VAL256 SER257 PHE258 TRP259 ILE260 ASN261 MET262 ASP263 ALA264 ALA265 PRO266 ALA267 ARG268 VAL269 GLY270 LEU271 GLY272 ILE273 THR274 THR275 VAL276 LEU277 THR278 MET279 THR280 THR281 GLN282 SER283 SER284 GLY285 SER286 ARG287 ALA288 SER289 LEU290 PRO291 LYS292 VAL293 SER294 TYR295 VAL296 LYS297 ALA298 ILE299 ASP300 ILE301 TRP302 MET303 ALA304 VAL305 CYS306 LEU307 LEU308 PHE309 VAL310 PHE311 SER312 ALA313 LEU314 LEU315 GLU316 TYR317 ALA318 ALA319 VAL320 ASN321 PHE322 ILE323 ALA324 ARG325 LYS329 LEU330 PHE331 ILE332 SER333 ARG334 ALA335 LYS336 ARG337 ILE338 ASP339 THR340 VAL341 SER342 ARG343 VAL344 ALA345 PHE346 PRO347 LEU348 VAL349 PHE350 LEU351 ILE352 PHE353 ASN354 ILE355 PHE356 TYR357 TRP358 ILE359 THR360 TYR361 LYS362 LEU363 VAL364
Unit 2 ALA25 PRO26 SER27 GLU28 PHE29 LEU30 ASP31 LYS32 LEU33 MET34 GLY35 LYS36 VAL37 SER38 GLY39 TYR40 ASP41 ALA42 ARG43 ILE44 ARG45 PRO46 ASN47 PHE48 LYS49 GLY50 PRO51 PRO52 VAL53 ASN54 VAL55 THR56 CYS57 ASN58 ILE59 PHE60 ILE61 ASN62 SER63 PHE64 GLY65 SER66 ILE67 ALA68 GLU69 THR70 THR71 MET72 ASP73 TYR74 ARG75 VAL76 ASN77 ILE78 PHE79 LEU80 ARG81 GLN82 GLN83 TRP84 ASN85 ASP86 PRO87 ARG88 LEU89 ALA90 TYR91 SER92 GLU93 TYR94 PRO95 ASP96 ASP97 SER98 LEU99 ASP100 LEU101 ASP102 PRO103 SER104 MET105 LEU106 ASP107 SER108 ILE109 TRP110 LYS111 PRO112 ASP113 LEU114 PHE115 PHE116 ALA117 ASN118 GLU119 LYS120 GLY121 ALA122 ASN123 PHE124 HIS125 GLU126 VAL127 THR128 THR129 ASP130 ASN131 LYS132 LEU133 LEU134 ARG135 ILE136 SER137 LYS138 ASN139 GLY140 ASN141 VAL142 LEU143 TYR144 SER145 ILE146 ARG147 ILE148 THR149 LEU150 VAL151 LEU152 ALA153 CYS154 PRO155 MET156 ASP157 LEU158 LYS159 ASN160 PHE161 PRO162 MET163 ASP164 VAL165 GLN166 THR167 CYS168 ILE169 MET170 GLN171 LEU172 GLU173 SER174 PHE175 GLY176 TYR177 THR178 MET179 ASN180 ASP181 LEU182 ILE183 PHE184 GLU185 TRP186 ASP187 GLU188 LYS189 GLY190 ALA191 VAL192 GLN193 VAL194 ALA195 ASP196 GLY197 LEU198 THR199 LEU200 PRO201 GLN202 PHE203 ILE204 LEU205 LYS206 GLU207 GLU208 LYS209 ASP210 LEU211 ARG212 TYR213 CYS214 THR215 LYS216 HIS217 TYR218 ASN219 THR220 GLY221 LYS222 PHE223 THR224 CYS225 ILE226 GLU227 ALA228 ARG229 PHE230 HIS231 LEU232 GLU233 ARG234 GLN235 MET236 GLY237 TYR238 TYR239 LEU240 ILE241 GLN242 MET243 TYR244 ILE245 PRO246 SER247 LEU248 LEU249 ILE250 VAL251 ILE252 LEU253 SER254 TRP255 VAL256 SER257 PHE258 TRP259 ILE260 ASN261 MET262 ASP263 ALA264 ALA265 PRO266 ALA267 ARG268 VAL269 GLY270 LEU271 GLY272 ILE273 THR274 THR275 VAL276 LEU277 THR278 MET279 THR280 THR281 GLN282 SER283 SER284 GLY285 SER286 ARG287 ALA288 SER289 LEU290 PRO291 LYS292 VAL293 SER294 TYR295 VAL296 LYS297 ALA298 ILE299 ASP300 ILE301 TRP302 MET303 ALA304 VAL305 CYS306 LEU307 LEU308 PHE309 VAL310 PHE311 SER312 ALA313 LEU314 LEU315 GLU316 TYR317 ALA318 ALA319 VAL320 ASN321 PHE322 ILE323 ALA324 ARG325 LYS329 LEU330 PHE331 ILE332 SER333 ARG334 ALA335 LYS336 ARG337 ILE338 ASP339 THR340 VAL341 SER342 ARG343 VAL344 ALA345 PHE346 PRO347 LEU348 VAL349 PHE350 LEU351 ILE352 PHE353 ASN354 ILE355 PHE356 TYR357 TRP358 ILE359 THR360 TYR361 LYS362 LEU363 VAL364
Unit 3 ALA25 PRO26 SER27 GLU28 PHE29 LEU30 ASP31 LYS32 LEU33 MET34 GLY35 LYS36 VAL37 SER38 GLY39 TYR40 ASP41 ALA42 ARG43 ILE44 ARG45 PRO46 ASN47 PHE48 LYS49 GLY50 PRO51 PRO52 VAL53 ASN54 VAL55 THR56 CYS57 ASN58 ILE59 PHE60 ILE61 ASN62 SER63 PHE64 GLY65 SER66 ILE67 ALA68 GLU69 THR70 THR71 MET72 ASP73 TYR74 ARG75 VAL76 ASN77 ILE78 PHE79 LEU80 ARG81 GLN82 GLN83 TRP84 ASN85 ASP86 PRO87 ARG88 LEU89 ALA90 TYR91 SER92 GLU93 TYR94 PRO95 ASP96 ASP97 SER98 LEU99 ASP100 LEU101 ASP102 PRO103 SER104 MET105 LEU106 ASP107 SER108 ILE109 TRP110 LYS111 PRO112 ASP113 LEU114 PHE115 PHE116 ALA117 ASN118 GLU119 LYS120 GLY121 ALA122 ASN123 PHE124 HIS125 GLU126 VAL127 THR128 THR129 ASP130 ASN131 LYS132 LEU133 LEU134 ARG135 ILE136 SER137 LYS138 ASN139 GLY140 ASN141 VAL142 LEU143 TYR144 SER145 ILE146 ARG147 ILE148 THR149 LEU150 VAL151 LEU152 ALA153 CYS154 PRO155 MET156 ASP157 LEU158 LYS159 ASN160 PHE161 PRO162 MET163 ASP164 VAL165 GLN166 THR167 CYS168 ILE169 MET170 GLN171 LEU172 GLU173 SER174 PHE175 GLY176 TYR177 THR178 MET179 ASN180 ASP181 LEU182 ILE183 PHE184 GLU185 TRP186 ASP187 GLU188 LYS189 GLY190 ALA191 VAL192 GLN193 VAL194 ALA195 ASP196 GLY197 LEU198 THR199 LEU200 PRO201 GLN202 PHE203 ILE204 LEU205 LYS206 GLU207 GLU208 LYS209 ASP210 LEU211 ARG212 TYR213 CYS214 THR215 LYS216 HIS217 TYR218 ASN219 THR220 GLY221 LYS222 PHE223 THR224 CYS225 ILE226 GLU227 ALA228 ARG229 PHE230 HIS231 LEU232 GLU233 ARG234 GLN235 MET236 GLY237 TYR238 TYR239 LEU240 ILE241 GLN242 MET243 TYR244 ILE245 PRO246 SER247 LEU248 LEU249 ILE250 VAL251 ILE252 LEU253 SER254 TRP255 VAL256 SER257 PHE258 TRP259 ILE260 ASN261 MET262 ASP263 ALA264 ALA265 PRO266 ALA267 ARG268 VAL269 GLY270 LEU271 GLY272 ILE273 THR274 THR275 VAL276 LEU277 THR278 MET279 THR280 THR281 GLN282 SER283 SER284 GLY285 SER286 ARG287 ALA288 SER289 LEU290 PRO291 LYS292 VAL293 SER294 TYR295 VAL296 LYS297 ALA298 ILE299 ASP300 ILE301 TRP302 MET303 ALA304 VAL305 CYS306 LEU307 LEU308 PHE309 VAL310 PHE311 SER312 ALA313 LEU314 LEU315 GLU316 TYR317 ALA318 ALA319 VAL320 ASN321 PHE322 ILE323 ALA324 ARG325 LYS329 LEU330 PHE331 ILE332 SER333 ARG334 ALA335 LYS336 ARG337 ILE338 ASP339 THR340 VAL341 SER342 ARG343 VAL344 ALA345 PHE346 PRO347 LEU348 VAL349 PHE350 LEU351 ILE352 PHE353 ASN354 ILE355 PHE356 TYR357 TRP358 ILE359 THR360 TYR361 LYS362 LEU363 VAL364
Unit 4 ALA25 PRO26 SER27 GLU28 PHE29 LEU30 ASP31 LYS32 LEU33 MET34 GLY35 LYS36 VAL37 SER38 GLY39 TYR40 ASP41 ALA42 ARG43 ILE44 ARG45 PRO46 ASN47 PHE48 LYS49 GLY50 PRO51 PRO52 VAL53 ASN54 VAL55 THR56 CYS57 ASN58 ILE59 PHE60 ILE61 ASN62 SER63 PHE64 GLY65 SER66 ILE67 ALA68 GLU69 THR70 THR71 MET72 ASP73 TYR74 ARG75 VAL76 ASN77 ILE78 PHE79 LEU80 ARG81 GLN82 GLN83 TRP84 ASN85 ASP86 PRO87 ARG88 LEU89 ALA90 TYR91 SER92 GLU93 TYR94 PRO95 ASP96 ASP97 SER98 LEU99 ASP100 LEU101 ASP102 PRO103 SER104 MET105 LEU106 ASP107 SER108 ILE109 TRP110 LYS111 PRO112 ASP113 LEU114 PHE115 PHE116 ALA117 ASN118 GLU119 LYS120 GLY121 ALA122 ASN123 PHE124 HIS125 GLU126 VAL127 THR128 THR129 ASP130 ASN131 LYS132 LEU133 LEU134 ARG135 ILE136 SER137 LYS138 ASN139 GLY140 ASN141 VAL142 LEU143 TYR144 SER145 ILE146 ARG147 ILE148 THR149 LEU150 VAL151 LEU152 ALA153 CYS154 PRO155 MET156 ASP157 LEU158 LYS159 ASN160 PHE161 PRO162 MET163 ASP164 VAL165 GLN166 THR167 CYS168 ILE169 MET170 GLN171 LEU172 GLU173 SER174 PHE175 GLY176 TYR177 THR178 MET179 ASN180 ASP181 LEU182 ILE183 PHE184 GLU185 TRP186 ASP187 GLU188 LYS189 GLY190 ALA191 VAL192 GLN193 VAL194 ALA195 ASP196 GLY197 LEU198 THR199 LEU200 PRO201 GLN202 PHE203 ILE204 LEU205 LYS206 GLU207 GLU208 LYS209 ASP210 LEU211 ARG212 TYR213 CYS214 THR215 LYS216 HIS217 TYR218 ASN219 THR220 GLY221 LYS222 PHE223 THR224 CYS225 ILE226 GLU227 ALA228 ARG229 PHE230 HIS231 LEU232 GLU233 ARG234 GLN235 MET236 GLY237 TYR238 TYR239 LEU240 ILE241 GLN242 MET243 TYR244 ILE245 PRO246 SER247 LEU248 LEU249 ILE250 VAL251 ILE252 LEU253 SER254 TRP255 VAL256 SER257 PHE258 TRP259 ILE260 ASN261 MET262 ASP263 ALA264 ALA265 PRO266 ALA267 ARG268 VAL269 GLY270 LEU271 GLY272 ILE273 THR274 THR275 VAL276 LEU277 THR278 MET279 THR280 THR281 GLN282 SER283 SER284 GLY285 SER286 ARG287 ALA288 SER289 LEU290 PRO291 LYS292 VAL293 SER294 TYR295 VAL296 LYS297 ALA298 ILE299 ASP300 ILE301 TRP302 MET303 ALA304 VAL305 CYS306 LEU307 LEU308 PHE309 VAL310 PHE311 SER312 ALA313 LEU314 LEU315 GLU316 TYR317 ALA318 ALA319 VAL320 ASN321 PHE322 ILE323 ALA324 ARG325 LYS329 LEU330 PHE331 ILE332 SER333 ARG334 ALA335 LYS336 ARG337 ILE338 ASP339 THR340 VAL341 SER342 ARG343 VAL344 ALA345 PHE346 PRO347 LEU348 VAL349 PHE350 LEU351 ILE352 PHE353 ASN354 ILE355 PHE356 TYR357 TRP358 ILE359 THR360 TYR361 LYS362 LEU363 VAL364
Unit 5 ALA25 PRO26 SER27 GLU28 PHE29 LEU30 ASP31 LYS32 LEU33 MET34 GLY35 LYS36 VAL37 SER38 GLY39 TYR40 ASP41 ALA42 ARG43 ILE44 ARG45 PRO46 ASN47 PHE48 LYS49 GLY50 PRO51 PRO52 VAL53 ASN54 VAL55 THR56 CYS57 ASN58 ILE59 PHE60 ILE61 ASN62 SER63 PHE64 GLY65 SER66 ILE67 ALA68 GLU69 THR70 THR71 MET72 ASP73 TYR74 ARG75 VAL76 ASN77 ILE78 PHE79 LEU80 ARG81 GLN82 GLN83 TRP84 ASN85 ASP86 PRO87 ARG88 LEU89 ALA90 TYR91 SER92 GLU93 TYR94 PRO95 ASP96 ASP97 SER98 LEU99 ASP100 LEU101 ASP102 PRO103 SER104 MET105 LEU106 ASP107 SER108 ILE109 TRP110 LYS111 PRO112 ASP113 LEU114 PHE115 PHE116 ALA117 ASN118 GLU119 LYS120 GLY121 ALA122 ASN123 PHE124 HIS125 GLU126 VAL127 THR128 THR129 ASP130 ASN131 LYS132 LEU133 LEU134 ARG135 ILE136 SER137 LYS138 ASN139 GLY140 ASN141 VAL142 LEU143 TYR144 SER145 ILE146 ARG147 ILE148 THR149 LEU150 VAL151 LEU152 ALA153 CYS154 PRO155 MET156 ASP157 LEU158 LYS159 ASN160 PHE161 PRO162 MET163 ASP164 VAL165 GLN166 THR167 CYS168 ILE169 MET170 GLN171 LEU172 GLU173 SER174 PHE175 GLY176 TYR177 THR178 MET179 ASN180 ASP181 LEU182 ILE183 PHE184 GLU185 TRP186 ASP187 GLU188 LYS189 GLY190 ALA191 VAL192 GLN193 VAL194 ALA195 ASP196 GLY197 LEU198 THR199 LEU200 PRO201 GLN202 PHE203 ILE204 LEU205 LYS206 GLU207 GLU208 LYS209 ASP210 LEU211 ARG212 TYR213 CYS214 THR215 LYS216 HIS217 TYR218 ASN219 THR220 GLY221 LYS222 PHE223 THR224 CYS225 ILE226 GLU227 ALA228 ARG229 PHE230 HIS231 LEU232 GLU233 ARG234 GLN235 MET236 GLY237 TYR238 TYR239 LEU240 ILE241 GLN242 MET243 TYR244 ILE245 PRO246 SER247 LEU248 LEU249 ILE250 VAL251 ILE252 LEU253 SER254 TRP255 VAL256 SER257 PHE258 TRP259 ILE260 ASN261 MET262 ASP263 ALA264 ALA265 PRO266 ALA267 ARG268 VAL269 GLY270 LEU271 GLY272 ILE273 THR274 THR275 VAL276 LEU277 THR278 MET279 THR280 THR281 GLN282 SER283 SER284 GLY285 SER286 ARG287 ALA288 SER289 LEU290 PRO291 LYS292 VAL293 SER294 TYR295 VAL296 LYS297 ALA298 ILE299 ASP300 ILE301 TRP302 MET303 ALA304 VAL305 CYS306 LEU307 LEU308 PHE309 VAL310 PHE311 SER312 ALA313 LEU314 LEU315 GLU316 TYR317 ALA318 ALA319 VAL320 ASN321 PHE322 ILE323 ALA324 ARG325 LYS329 LEU330 PHE331 ILE332 SER333 ARG334 ALA335 LYS336 ARG337 ILE338 ASP339 THR340 VAL341 SER342 ARG343 VAL344 ALA345 PHE346 PRO347 LEU348 VAL349 PHE350 LEU351 ILE352 PHE353 ASN354 ILE355 PHE356 TYR357 TRP358 ILE359 THR360 TYR361 LYS362 LEU363 VAL364
Ligands
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2
Unit 11 SY9503
Unit 12 SY9401
Unit 13 SY9401
Unit 14 SY9401
Unit 15 SY9401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany