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Sequence, Chains, Asymmetric and Biological Units

Title CRYOELECTRON MICROSCOPY OF DENGUE-FAB E104 COMPLEX AT PH 5.5
Keywords DENGUE VIRUS, DENV2 FAB E104, LOW PH, FUSION TRIMER, VIRUS-I SYSTEM COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3J8D     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCOPROTEIN DIII  B 97 97 0
2  Protein   ANTIBODY E111 FAB FRAGMENT  A 425 425 0
3  Protein   ANTIBODY E111 FAB FRAGMENT  D 425 425 0
4  Protein   GLYCOPROTEIN DIII  F 97 97 0
5  Protein   ENVELOPE PROTEIN E  G 380 380 0
6  Protein   ENVELOPE PROTEIN E  H 283 283 0
7  Protein   ENVELOPE PROTEIN E  I 283 283 0
total       1990 1990 0

Proteins
Unit 1 TYR299 VAL300 MET301 CYS302 THR303 GLY304 SER305 PHE306 LYS307 LEU308 GLU309 LYS310 GLU311 VAL312 ALA313 GLU314 THR315 GLN316 HIS317 GLY318 THR319 VAL320 LEU321 VAL322 GLN323 VAL324 LYS325 TYR326 GLU327 GLY328 THR329 ASP330 ALA331 PRO332 CYS333 LYS334 ILE335 PRO336 PHE337 SER338 SER339 GLN340 ASP341 GLU342 LYS343 GLY344 VAL345 THR346 GLN347 ASN348 GLY349 ARG350 LEU351 ILE352 THR353 ALA354 ASN355 PRO356 ILE357 VAL358 THR359 ASP360 LYS361 GLU362 LYS363 PRO364 VAL365 ASN366 ILE367 GLU368 ALA369 GLU370 PRO371 PRO372 PHE373 GLY374 GLU375 SER376 TYR377 ILE378 VAL379 VAL380 GLY381 ALA382 GLY383 GLU384 LYS385 ALA386 LEU387 LYS388 LEU389 SER390 TRP391 PHE392 LYS393 LYS394 GLY395
Unit 2 ASN396 ILE397 VAL398 LEU399 THR400 GLN401 SER402 PRO403 ALA404 SER405 LEU406 ALA407 VAL408 SER409 LEU410 GLY411 GLN412 ARG413 ALA414 THR415 ILE416 SER417 CYS418 ARG419 ALA420 SER421 GLU422 SER423 VAL424 ASP425 SER426 PHE427 ILE428 TYR429 TRP430 TYR431 GLN432 GLN433 LYS434 PRO435 GLY436 GLN437 PRO438 PRO439 LYS440 LEU441 LEU442 ILE443 TYR444 LEU445 ALA446 SER447 ASN448 LEU449 GLU450 SER451 GLY452 VAL453 PRO454 ALA455 ARG456 PHE457 SER458 GLY459 SER460 GLY461 SER462 GLU463 THR464 ASP465 PHE466 THR467 LEU468 THR469 ILE470 ASP471 SER472 VAL473 GLU474 THR475 ASP476 ASP477 ALA478 ALA479 THR480 TYR481 TYR482 CYS483 GLN484 GLN485 ASN486 ASN487 GLU488 ASP489 PRO490 TYR491 THR492 PHE493 GLY494 GLY495 GLY496 THR497 LYS498 LEU499 GLU500 ILE501 LYS502 ARG503 ALA504 ASP505 ALA506 ALA507 PRO508 THR509 VAL510 SER511 ILE512 PHE513 PRO514 PRO515 SER516 SER517 GLU518 GLN519 LEU520 THR521 SER522 GLY523 GLY524 ALA525 SER526 VAL527 VAL528 CYS529 PHE530 LEU531 ASN532 ASN533 PHE534 TYR535 PRO536 LYS537 ASP538 ILE539 ASN540 VAL541 LYS542 TRP543 LYS544 ILE545 ASP546 GLY547 SER548 GLU549 ARG550 GLN551 ASN552 GLY553 VAL554 LEU555 ASN556 SER557 TRP558 THR559 ASP560 GLN561 ASP562 SER563 LYS564 ASP565 SER566 THR567 TYR568 SER569 MET570 SER571 SER572 THR573 LEU574 THR575 LEU576 THR577 LYS578 ASP579 GLU580 TYR581 GLU582 ARG583 HIS584 ASN585 SER586 TYR587 THR588 CYS589 GLU590 ALA591 THR592 HIS593 LYS594 THR595 SER596 THR597 SER598 PRO599 ILE600 VAL601 LYS602 SER603 PHE604 ASN605 ARG606 GLN608 VAL609 GLN610 LEU611 LEU612 GLN613 PRO614 GLY615 ALA616 GLU617 LEU618 VAL619 LYS620 PRO621 GLY622 ALA623 SER624 MET625 LYS626 LEU627 SER628 CYS629 LYS630 ALA631 SER632 GLY633 TYR634 THR635 PHE636 THR637 ASN638 TRP639 TRP640 MET641 HIS642 TRP643 VAL644 ARG645 LEU646 ARG647 PRO648 GLY649 ARG650 GLY651 LEU652 GLU653 TRP654 ILE655 GLY656 ARG657 ILE658 ASP659A PRO659B ASN660 SER661 ASP662 VAL663 ASN664 LYS665 TYR666 ASN667 GLU668 LYS669 PHE670 GLU671 ASN672 ARG673 ALA674 SER675 LEU676 THR677 VAL678 ASP679 LYS680 HIS681 SER682 SER683 THR684 ALA685 TYR686 MET687 GLN688 LEU689 THR690 SER691 GLU692 ASP693 SER694 ALA695 ILE696 TYR697 TYR698 CYS699 ALA700 ARG701 TRP702 PHE703 PHE704 PRO705 TRP706 TYR707A PHE707B ASP708 VAL709 TRP710 GLY711 THR712 GLY713 THR714 THR715 VAL716 THR717 VAL718 SER719 SER720 ALA721 LYS722 THR723 THR724 ALA725 PRO726 SER727 VAL728 TYR729 PRO730 LEU731 ALA732 PRO733 VAL734 CYS735 GLY736 GLY737 THR738 THR739 GLY740 SER741 SER742 VAL743 THR744 LEU745 GLY746 CYS747 LEU748 VAL749 LYS750 GLY751 TYR752 PHE753 PRO754 GLU755 PRO756 VAL757 THR758 LEU759 THR760 TRP761 ASN762 SER763 GLY764 SER765 LEU766 SER767 SER768 GLY769 VAL770 HIS771 THR772 PHE773 PRO774 ALA775 LEU776 LEU777 GLN778 SER779 GLY780 LEU781 TYR782 THR783 LEU784 SER785 SER786 SER787 VAL788 THR789 VAL790 THR791 SER792 ASN793 THR794 TRP795 PRO796 SER797 GLN798 THR799 ILE800 THR801 CYS802 ASN803 VAL804 ALA805 HIS806 PRO807 ALA808 SER809 SER810 THR811 LYS812 VAL813 ASP814 LYS815 LYS816 ILE817 GLU818 SER819
Unit 3 ASN396 ILE397 VAL398 LEU399 THR400 GLN401 SER402 PRO403 ALA404 SER405 LEU406 ALA407 VAL408 SER409 LEU410 GLY411 GLN412 ARG413 ALA414 THR415 ILE416 SER417 CYS418 ARG419 ALA420 SER421 GLU422 SER423 VAL424 ASP425 SER426 PHE427 ILE428 TYR429 TRP430 TYR431 GLN432 GLN433 LYS434 PRO435 GLY436 GLN437 PRO438 PRO439 LYS440 LEU441 LEU442 ILE443 TYR444 LEU445 ALA446 SER447 ASN448 LEU449 GLU450 SER451 GLY452 VAL453 PRO454 ALA455 ARG456 PHE457 SER458 GLY459 SER460 GLY461 SER462 GLU463 THR464 ASP465 PHE466 THR467 LEU468 THR469 ILE470 ASP471 SER472 VAL473 GLU474 THR475 ASP476 ASP477 ALA478 ALA479 THR480 TYR481 TYR482 CYS483 GLN484 GLN485 ASN486 ASN487 GLU488 ASP489 PRO490 TYR491 THR492 PHE493 GLY494 GLY495 GLY496 THR497 LYS498 LEU499 GLU500 ILE501 LYS502 ARG503 ALA504 ASP505 ALA506 ALA507 PRO508 THR509 VAL510 SER511 ILE512 PHE513 PRO514 PRO515 SER516 SER517 GLU518 GLN519 LEU520 THR521 SER522 GLY523 GLY524 ALA525 SER526 VAL527 VAL528 CYS529 PHE530 LEU531 ASN532 ASN533 PHE534 TYR535 PRO536 LYS537 ASP538 ILE539 ASN540 VAL541 LYS542 TRP543 LYS544 ILE545 ASP546 GLY547 SER548 GLU549 ARG550 GLN551 ASN552 GLY553 VAL554 LEU555 ASN556 SER557 TRP558 THR559 ASP560 GLN561 ASP562 SER563 LYS564 ASP565 SER566 THR567 TYR568 SER569 MET570 SER571 SER572 THR573 LEU574 THR575 LEU576 THR577 LYS578 ASP579 GLU580 TYR581 GLU582 ARG583 HIS584 ASN585 SER586 TYR587 THR588 CYS589 GLU590 ALA591 THR592 HIS593 LYS594 THR595 SER596 THR597 SER598 PRO599 ILE600 VAL601 LYS602 SER603 PHE604 ASN605 ARG606 GLN608 VAL609 GLN610 LEU611 LEU612 GLN613 PRO614 GLY615 ALA616 GLU617 LEU618 VAL619 LYS620 PRO621 GLY622 ALA623 SER624 MET625 LYS626 LEU627 SER628 CYS629 LYS630 ALA631 SER632 GLY633 TYR634 THR635 PHE636 THR637 ASN638 TRP639 TRP640 MET641 HIS642 TRP643 VAL644 ARG645 LEU646 ARG647 PRO648 GLY649 ARG650 GLY651 LEU652 GLU653 TRP654 ILE655 GLY656 ARG657 ILE658 ASP659A PRO659B ASN660 SER661 ASP662 VAL663 ASN664 LYS665 TYR666 ASN667 GLU668 LYS669 PHE670 GLU671 ASN672 ARG673 ALA674 SER675 LEU676 THR677 VAL678 ASP679 LYS680 HIS681 SER682 SER683 THR684 ALA685 TYR686 MET687 GLN688 LEU689 THR690 SER691 GLU692 ASP693 SER694 ALA695 ILE696 TYR697 TYR698 CYS699 ALA700 ARG701 TRP702 PHE703 PHE704 PRO705 TRP706 TYR707A PHE707B ASP708 VAL709 TRP710 GLY711 THR712 GLY713 THR714 THR715 VAL716 THR717 VAL718 SER719 SER720 ALA721 LYS722 THR723 THR724 ALA725 PRO726 SER727 VAL728 TYR729 PRO730 LEU731 ALA732 PRO733 VAL734 CYS735 GLY736 GLY737 THR738 THR739 GLY740 SER741 SER742 VAL743 THR744 LEU745 GLY746 CYS747 LEU748 VAL749 LYS750 GLY751 TYR752 PHE753 PRO754 GLU755 PRO756 VAL757 THR758 LEU759 THR760 TRP761 ASN762 SER763 GLY764 SER765 LEU766 SER767 SER768 GLY769 VAL770 HIS771 THR772 PHE773 PRO774 ALA775 LEU776 LEU777 GLN778 SER779 GLY780 LEU781 TYR782 THR783 LEU784 SER785 SER786 SER787 VAL788 THR789 VAL790 THR791 SER792 ASN793 THR794 TRP795 PRO796 SER797 GLN798 THR799 ILE800 THR801 CYS802 ASN803 VAL804 ALA805 HIS806 PRO807 ALA808 SER809 SER810 THR811 LYS812 VAL813 ASP814 LYS815 LYS816 ILE817 GLU818 SER819
Unit 4 TYR299 VAL300 MET301 CYS302 THR303 GLY304 SER305 PHE306 LYS307 LEU308 GLU309 LYS310 GLU311 VAL312 ALA313 GLU314 THR315 GLN316 HIS317 GLY318 THR319 VAL320 LEU321 VAL322 GLN323 VAL324 LYS325 TYR326 GLU327 GLY328 THR329 ASP330 ALA331 PRO332 CYS333 LYS334 ILE335 PRO336 PHE337 SER338 SER339 GLN340 ASP341 GLU342 LYS343 GLY344 VAL345 THR346 GLN347 ASN348 GLY349 ARG350 LEU351 ILE352 THR353 ALA354 ASN355 PRO356 ILE357 VAL358 THR359 ASP360 LYS361 GLU362 LYS363 PRO364 VAL365 ASN366 ILE367 GLU368 ALA369 GLU370 PRO371 PRO372 PHE373 GLY374 GLU375 SER376 TYR377 ILE378 VAL379 VAL380 GLY381 ALA382 GLY383 GLU384 LYS385 ALA386 LEU387 LYS388 LEU389 SER390 TRP391 PHE392 LYS393 LYS394 GLY395
Unit 5 MET1 ARG2 CYS3 ILE4 GLY5 ILE6 SER7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 VAL15 SER16 GLY17 GLY18 SER19 TRP20 VAL21 ASP22 ILE23 VAL24 LEU25 GLU26 HIS27 GLY28 SER29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 PHE43 GLU44 LEU45 ILE46 LYS47 THR48 GLU49 ALA50 LYS51 GLN52 PRO53 ALA54 THR55 LEU56 ARG57 LYS58 TYR59 CYS60 ILE61 GLU62 ALA63 LYS64 LEU65 THR66 ASN67 THR68 THR69 THR70 GLU71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 PRO80 THR81 LEU82 ASN83 GLU84 GLU85 GLN86 ASP87 LYS88 ARG89 PHE90 VAL91 CYS92 LYS93 HIS94 SER95 MET96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 GLY112 ILE113 VAL114 THR115 CYS116 ALA117 MET118 PHE119 THR120 CYS121 LYS122 LYS123 ASN124 MET125 GLU126 GLY127 LYS128 ILE129 VAL130 GLN131 PRO132 GLU133 ASN134 LEU135 GLU136 TYR137 THR138 VAL139 VAL140 ILE141 THR142 PRO143 HIS144 GLY159 LYS160 GLU161 VAL162 LYS163 ILE164 THR165 PRO166 GLN167 SER168 SER169 ILE170 THR171 GLU172 ALA173 GLU174 LEU175 THR176 GLY177 TYR178 GLY179 THR180 VAL181 THR182 MET183 GLU184 CYS185 SER186 PRO187 ARG188 THR189 GLY190 LEU191 ASP192 PHE193 ASN194 GLU195 MET196 VAL197 LEU198 LEU199 GLN200 MET201 LYS202 ASP203 LYS204 ALA205 TRP206 LEU207 VAL208 HIS209 ARG210 GLN211 TRP212 PHE213 LEU214 ASP215 LEU216 PRO217 LEU218 PRO219 TRP220 LEU221 PRO222 GLY223 ALA224 ASP225 THR226 GLN227 GLY228 SER229 ASN230 TRP231 ILE232 GLN233 LYS234 GLU235 THR236 LEU237 VAL238 THR239 PHE240 LYS241 ASN242 PRO243 HIS244 ALA245 LYS246 LYS247 GLN248 ASP249 VAL250 VAL251 VAL252 LEU253 GLY254 SER255 GLN256 GLU257 GLY258 ALA259 MET260 HIS261 THR262 ALA263 LEU264 THR265 GLY266 ALA267 THR268 GLU269 ILE270 GLN271 MET272 SER273 SER274 GLY275 ASN276 LEU277 LEU278 PHE279 THR280 GLY281 HIS282 LEU283 LYS284 CYS285 ARG286 LEU287 ARG288 MET289 ASP290 LYS291 LEU292 GLN293 LEU294 LYS295 GLY296 MET297 SER298 TYR299 SER300 MET301 CYS302 THR303 GLY304 LYS305 PHE306 LYS307 VAL308 VAL309 LYS310 GLU311 ILE312 ALA313 GLU314 THR315 GLN316 HIS317 GLY318 THR319 ILE320 VAL321 ILE322 ARG323 VAL324 GLN325 TYR326 GLU327 GLY328 ASP329 GLY330 SER331 PRO332 CYS333 LYS334 ILE335 PRO336 PHE337 GLU338 ILE339 MET340 ASP341 LEU342 GLU343 LYS344 ARG345 HIS346 VAL347 LEU348 GLY349 ARG350 LEU351 ILE352 THR353 VAL354 ASN355 PRO356 ILE357 VAL358 THR359 GLU360 LYS361 ASP362 SER363 PRO364 VAL365 ASN366 ILE367 GLU368 ALA369 GLU370 PRO371 PRO372 PHE373 GLY374 ASP375 SER376 TYR377 ILE378 ILE379 ILE380 GLY381 VAL382 GLU383 PRO384 GLY385 GLN386 LEU387 LYS388 LEU389 ASN390 TRP391 PHE392 LYS393 LYS394
Unit 6 MET1 ARG2 CYS3 ILE4 GLY5 ILE6 SER7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 VAL15 SER16 GLY17 GLY18 SER19 TRP20 VAL21 ASP22 ILE23 VAL24 LEU25 GLU26 HIS27 GLY28 SER29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 PHE43 GLU44 LEU45 ILE46 LYS47 THR48 GLU49 ALA50 LYS51 GLN52 PRO53 ALA54 THR55 LEU56 ARG57 LYS58 TYR59 CYS60 ILE61 GLU62 ALA63 LYS64 LEU65 THR66 ASN67 THR68 THR69 THR70 GLU71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 PRO80 THR81 LEU82 ASN83 GLU84 GLU85 GLN86 ASP87 LYS88 ARG89 PHE90 VAL91 CYS92 LYS93 HIS94 SER95 MET96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 GLY112 ILE113 VAL114 THR115 CYS116 ALA117 MET118 PHE119 THR120 CYS121 LYS122 LYS123 ASN124 MET125 GLU126 GLY127 LYS128 ILE129 VAL130 GLN131 PRO132 GLU133 ASN134 LEU135 GLU136 TYR137 THR138 VAL139 VAL140 ILE141 THR142 PRO143 HIS144 GLY159 LYS160 GLU161 VAL162 LYS163 ILE164 THR165 PRO166 GLN167 SER168 SER169 ILE170 THR171 GLU172 ALA173 GLU174 LEU175 THR176 GLY177 TYR178 GLY179 THR180 VAL181 THR182 MET183 GLU184 CYS185 SER186 PRO187 ARG188 THR189 GLY190 LEU191 ASP192 PHE193 ASN194 GLU195 MET196 VAL197 LEU198 LEU199 GLN200 MET201 LYS202 ASP203 LYS204 ALA205 TRP206 LEU207 VAL208 HIS209 ARG210 GLN211 TRP212 PHE213 LEU214 ASP215 LEU216 PRO217 LEU218 PRO219 TRP220 LEU221 PRO222 GLY223 ALA224 ASP225 THR226 GLN227 GLY228 SER229 ASN230 TRP231 ILE232 GLN233 LYS234 GLU235 THR236 LEU237 VAL238 THR239 PHE240 LYS241 ASN242 PRO243 HIS244 ALA245 LYS246 LYS247 GLN248 ASP249 VAL250 VAL251 VAL252 LEU253 GLY254 SER255 GLN256 GLU257 GLY258 ALA259 MET260 HIS261 THR262 ALA263 LEU264 THR265 GLY266 ALA267 THR268 GLU269 ILE270 GLN271 MET272 SER273 SER274 GLY275 ASN276 LEU277 LEU278 PHE279 THR280 GLY281 HIS282 LEU283 LYS284 CYS285 ARG286 LEU287 ARG288 MET289 ASP290 LYS291 LEU292 GLN293 LEU294 LYS295 GLY296 MET297
Unit 7 MET1 ARG2 CYS3 ILE4 GLY5 ILE6 SER7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 VAL15 SER16 GLY17 GLY18 SER19 TRP20 VAL21 ASP22 ILE23 VAL24 LEU25 GLU26 HIS27 GLY28 SER29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 PHE43 GLU44 LEU45 ILE46 LYS47 THR48 GLU49 ALA50 LYS51 GLN52 PRO53 ALA54 THR55 LEU56 ARG57 LYS58 TYR59 CYS60 ILE61 GLU62 ALA63 LYS64 LEU65 THR66 ASN67 THR68 THR69 THR70 GLU71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 PRO80 THR81 LEU82 ASN83 GLU84 GLU85 GLN86 ASP87 LYS88 ARG89 PHE90 VAL91 CYS92 LYS93 HIS94 SER95 MET96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 GLY112 ILE113 VAL114 THR115 CYS116 ALA117 MET118 PHE119 THR120 CYS121 LYS122 LYS123 ASN124 MET125 GLU126 GLY127 LYS128 ILE129 VAL130 GLN131 PRO132 GLU133 ASN134 LEU135 GLU136 TYR137 THR138 VAL139 VAL140 ILE141 THR142 PRO143 HIS144 GLY159 LYS160 GLU161 VAL162 LYS163 ILE164 THR165 PRO166 GLN167 SER168 SER169 ILE170 THR171 GLU172 ALA173 GLU174 LEU175 THR176 GLY177 TYR178 GLY179 THR180 VAL181 THR182 MET183 GLU184 CYS185 SER186 PRO187 ARG188 THR189 GLY190 LEU191 ASP192 PHE193 ASN194 GLU195 MET196 VAL197 LEU198 LEU199 GLN200 MET201 LYS202 ASP203 LYS204 ALA205 TRP206 LEU207 VAL208 HIS209 ARG210 GLN211 TRP212 PHE213 LEU214 ASP215 LEU216 PRO217 LEU218 PRO219 TRP220 LEU221 PRO222 GLY223 ALA224 ASP225 THR226 GLN227 GLY228 SER229 ASN230 TRP231 ILE232 GLN233 LYS234 GLU235 THR236 LEU237 VAL238 THR239 PHE240 LYS241 ASN242 PRO243 HIS244 ALA245 LYS246 LYS247 GLN248 ASP249 VAL250 VAL251 VAL252 LEU253 GLY254 SER255 GLN256 GLU257 GLY258 ALA259 MET260 HIS261 THR262 ALA263 LEU264 THR265 GLY266 ALA267 THR268 GLU269 ILE270 GLN271 MET272 SER273 SER274 GLY275 ASN276 LEU277 LEU278 PHE279 THR280 GLY281 HIS282 LEU283 LYS284 CYS285 ARG286 LEU287 ARG288 MET289 ASP290 LYS291 LEU292 GLN293 LEU294 LYS295 GLY296 MET297

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany