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Sequence, Chains, Asymmetric and Biological Units

Title CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 IN COMPLEX WITH ANTIBODY 5J7 FAB
Keywords DENGUE VIRUS, HUMAN ANTIBODY, NEUTRALIZATION, VIRUS-IMMUNE S COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3J6U     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENVELOPE PROTEIN  A 493 493 0
2  Protein   MEMBRANE PROTEIN  B 72 72 0
3  Protein   ENVELOPE PROTEIN  C 493 493 0
4  Protein   MEMBRANE PROTEIN  D 72 72 0
5  Protein   ENVELOPE PROTEIN  E 493 493 0
6  Protein   MEMBRANE PROTEIN  F 72 72 0
7  Protein   FAB 5J7 HEAVY CHAIN  H 126 126 0
8  Protein   FAB 5J7 LIGHT CHAIN  L 111 111 0
total       1932 1932 0
Proteins
Unit 1 MET1 ARG2 CYS3 VAL4 GLY5 VAL6 GLY7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 LEU15 SER16 GLY17 ALA18 THR19 TRP20 VAL21 ASP22 VAL23 VAL24 LEU25 GLU26 HIS27 GLY28 GLY29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 ILE43 GLU44 LEU45 GLN46 LYS47 THR48 GLU49 ALA50 THR51 GLN52 LEU53 ALA54 THR55 LEU56 ARG57 LYS58 LEU59 CYS60 ILE61 GLU62 GLY63 LYS64 ILE65 THR66 ASN67 ILE68 THR69 THR70 ASP71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 ALA80 VAL81 LEU82 PRO83 GLU84 GLU85 GLN86 ASP87 GLN88 ASN89 TYR90 VAL91 CYS92 LYS93 HIS94 THR95 TYR96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 SER112 LEU113 VAL114 THR115 CYS116 ALA117 LYS118 PHE119 GLN120 CYS121 LEU122 GLU123 PRO124 ILE125 GLU126 GLY127 LYS128 VAL129 VAL130 GLN131 TYR132 GLU133 ASN134 LEU135 LYS136 TYR137 THR138 VAL139 ILE140 ILE141 THR142 VAL143 HIS144 THR145 GLY146 ASP147 GLN148 HIS149 GLN150 VAL151 GLY152 ASN153 GLU154 THR155 GLN156 GLY157 VAL158 THR159 ALA160 GLU161 ILE162 THR163 PRO164 GLN165 ALA166 SER167 THR168 THR169 GLU170 ALA171 ILE172 LEU173 PRO174 GLU175 TYR176 GLY177 THR178 LEU179 GLY180 LEU181 GLU182 CYS183 SER184 PRO185 ARG186 THR187 GLY188 LEU189 ASP190 PHE191 ASN192 GLU193 MET194 ILE195 LEU196 LEU197 THR198 MET199 LYS200 ASN201 LYS202 ALA203 TRP204 MET205 VAL206 HIS207 ARG208 GLN209 TRP210 PHE211 PHE212 ASP213 LEU214 PRO215 LEU216 PRO217 TRP218 ALA219 SER220 GLY221 ALA222 THR223 THR224 GLU225 THR226 PRO227 THR228 TRP229 ASN230 ARG231 LYS232 GLU233 LEU234 LEU235 VAL236 THR237 PHE238 LYS239 ASN240 ALA241 HIS242 ALA243 LYS244 LYS245 GLN246 GLU247 VAL248 VAL249 VAL250 LEU251 GLY252 SER253 GLN254 GLU255 GLY256 ALA257 MET258 HIS259 THR260 ALA261 LEU262 THR263 GLY264 ALA265 THR266 GLU267 ILE268 GLN269 ASN270 SER271 GLY272 GLY273 THR274 SER275 ILE276 PHE277 ALA278 GLY279 HIS280 LEU281 LYS282 CYS283 ARG284 LEU285 LYS286 MET287 ASP288 LYS289 LEU290 GLU291 LEU292 LYS293 GLY294 MET295 SER296 TYR297 ALA298 MET299 CYS300 THR301 ASN302 THR303 PHE304 VAL305 LEU306 LYS307 LYS308 GLU309 VAL310 SER311 GLU312 THR313 GLN314 HIS315 GLY316 THR317 ILE318 LEU319 ILE320 LYS321 VAL322 GLU323 TYR324 LYS325 GLY326 GLU327 ASP328 ALA329 PRO330 CYS331 LYS332 ILE333 PRO334 PHE335 SER336 THR337 GLU338 ASP339 GLY340 GLN341 GLY342 LYS343 ALA344 HIS345 ASN346 GLY347 ARG348 LEU349 ILE350 THR351 ALA352 ASN353 PRO354 VAL355 VAL356 THR357 LYS358 LYS359 GLU360 GLU361 PRO362 VAL363 ASN364 ILE365 GLU366 ALA367 GLU368 PRO369 PRO370 PHE371 GLY372 GLU373 SER374 ASN375 ILE376 VAL377 ILE378 GLY379 ILE380 GLY381 ASP382 ASN383 ALA384 LEU385 LYS386 ILE387 ASN388 TRP389 TYR390 LYS391 LYS392 GLY393 SER394 SER395 ILE396 GLY397 LYS398 MET399 PHE400 GLU401 ALA402 THR403 ALA404 ARG405 GLY406 ALA407 ARG408 ARG409 MET410 ALA411 ILE412 LEU413 GLY414 ASP415 THR416 ALA417 TRP418 ASP419 PHE420 GLY421 SER422 VAL423 GLY424 GLY425 VAL426 LEU427 ASN428 SER429 LEU430 GLY431 LYS432 MET433 VAL434 HIS435 GLN436 ILE437 PHE438 GLY439 SER440 ALA441 TYR442 THR443 ALA444 LEU445 PHE446 SER447 GLY448 VAL449 SER450 TRP451 VAL452 MET453 LYS454 ILE455 GLY456 ILE457 GLY458 VAL459 LEU460 LEU461 THR462 TRP463 ILE464 GLY465 LEU466 ASN467 SER468 LYS469 ASN470 THR471 SER472 MET473 SER474 PHE475 SER476 CYS477 ILE478 ALA479 ILE480 GLY481 ILE482 ILE483 THR484 LEU485 TYR486 LEU487 GLY488 ALA489 VAL490 VAL491 GLN492 ALA493
Unit 2 SER1 VAL2 ALA3 LEU4 ALA5 PRO6 HIS7 VAL8 GLY9 MET10 GLY11 LEU12 ASP13 THR14 ARG15 THR16 GLN17 THR18 TRP19 MET20 SER21 ALA22 GLU23 GLY24 ALA25 TRP26 ARG27 GLN28 VAL29 GLU30 LYS31 VAL32 GLU33 THR34 TRP35 ALA36 LEU37 ARG38 HIS39 PRO40 GLY41 PHE42 THR43 ILE44 LEU45 ALA46 LEU47 PHE48 LEU49 ALA50 HIS51 TYR52 ILE53 GLY54 THR55 SER56 LEU57 THR58 GLN59 LYS60 VAL61 VAL62 ILE63 PHE64 ILE65 LEU66 LEU67 MET68 LEU69 VAL70 THR71 PRO72
Unit 3 MET1 ARG2 CYS3 VAL4 GLY5 VAL6 GLY7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 LEU15 SER16 GLY17 ALA18 THR19 TRP20 VAL21 ASP22 VAL23 VAL24 LEU25 GLU26 HIS27 GLY28 GLY29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 ILE43 GLU44 LEU45 GLN46 LYS47 THR48 GLU49 ALA50 THR51 GLN52 LEU53 ALA54 THR55 LEU56 ARG57 LYS58 LEU59 CYS60 ILE61 GLU62 GLY63 LYS64 ILE65 THR66 ASN67 ILE68 THR69 THR70 ASP71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 ALA80 VAL81 LEU82 PRO83 GLU84 GLU85 GLN86 ASP87 GLN88 ASN89 TYR90 VAL91 CYS92 LYS93 HIS94 THR95 TYR96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 SER112 LEU113 VAL114 THR115 CYS116 ALA117 LYS118 PHE119 GLN120 CYS121 LEU122 GLU123 PRO124 ILE125 GLU126 GLY127 LYS128 VAL129 VAL130 GLN131 TYR132 GLU133 ASN134 LEU135 LYS136 TYR137 THR138 VAL139 ILE140 ILE141 THR142 VAL143 HIS144 THR145 GLY146 ASP147 GLN148 HIS149 GLN150 VAL151 GLY152 ASN153 GLU154 THR155 GLN156 GLY157 VAL158 THR159 ALA160 GLU161 ILE162 THR163 PRO164 GLN165 ALA166 SER167 THR168 THR169 GLU170 ALA171 ILE172 LEU173 PRO174 GLU175 TYR176 GLY177 THR178 LEU179 GLY180 LEU181 GLU182 CYS183 SER184 PRO185 ARG186 THR187 GLY188 LEU189 ASP190 PHE191 ASN192 GLU193 MET194 ILE195 LEU196 LEU197 THR198 MET199 LYS200 ASN201 LYS202 ALA203 TRP204 MET205 VAL206 HIS207 ARG208 GLN209 TRP210 PHE211 PHE212 ASP213 LEU214 PRO215 LEU216 PRO217 TRP218 ALA219 SER220 GLY221 ALA222 THR223 THR224 GLU225 THR226 PRO227 THR228 TRP229 ASN230 ARG231 LYS232 GLU233 LEU234 LEU235 VAL236 THR237 PHE238 LYS239 ASN240 ALA241 HIS242 ALA243 LYS244 LYS245 GLN246 GLU247 VAL248 VAL249 VAL250 LEU251 GLY252 SER253 GLN254 GLU255 GLY256 ALA257 MET258 HIS259 THR260 ALA261 LEU262 THR263 GLY264 ALA265 THR266 GLU267 ILE268 GLN269 ASN270 SER271 GLY272 GLY273 THR274 SER275 ILE276 PHE277 ALA278 GLY279 HIS280 LEU281 LYS282 CYS283 ARG284 LEU285 LYS286 MET287 ASP288 LYS289 LEU290 GLU291 LEU292 LYS293 GLY294 MET295 SER296 TYR297 ALA298 MET299 CYS300 THR301 ASN302 THR303 PHE304 VAL305 LEU306 LYS307 LYS308 GLU309 VAL310 SER311 GLU312 THR313 GLN314 HIS315 GLY316 THR317 ILE318 LEU319 ILE320 LYS321 VAL322 GLU323 TYR324 LYS325 GLY326 GLU327 ASP328 ALA329 PRO330 CYS331 LYS332 ILE333 PRO334 PHE335 SER336 THR337 GLU338 ASP339 GLY340 GLN341 GLY342 LYS343 ALA344 HIS345 ASN346 GLY347 ARG348 LEU349 ILE350 THR351 ALA352 ASN353 PRO354 VAL355 VAL356 THR357 LYS358 LYS359 GLU360 GLU361 PRO362 VAL363 ASN364 ILE365 GLU366 ALA367 GLU368 PRO369 PRO370 PHE371 GLY372 GLU373 SER374 ASN375 ILE376 VAL377 ILE378 GLY379 ILE380 GLY381 ASP382 ASN383 ALA384 LEU385 LYS386 ILE387 ASN388 TRP389 TYR390 LYS391 LYS392 GLY393 SER394 SER395 ILE396 GLY397 LYS398 MET399 PHE400 GLU401 ALA402 THR403 ALA404 ARG405 GLY406 ALA407 ARG408 ARG409 MET410 ALA411 ILE412 LEU413 GLY414 ASP415 THR416 ALA417 TRP418 ASP419 PHE420 GLY421 SER422 VAL423 GLY424 GLY425 VAL426 LEU427 ASN428 SER429 LEU430 GLY431 LYS432 MET433 VAL434 HIS435 GLN436 ILE437 PHE438 GLY439 SER440 ALA441 TYR442 THR443 ALA444 LEU445 PHE446 SER447 GLY448 VAL449 SER450 TRP451 VAL452 MET453 LYS454 ILE455 GLY456 ILE457 GLY458 VAL459 LEU460 LEU461 THR462 TRP463 ILE464 GLY465 LEU466 ASN467 SER468 LYS469 ASN470 THR471 SER472 MET473 SER474 PHE475 SER476 CYS477 ILE478 ALA479 ILE480 GLY481 ILE482 ILE483 THR484 LEU485 TYR486 LEU487 GLY488 ALA489 VAL490 VAL491 GLN492 ALA493
Unit 4 SER1 VAL2 ALA3 LEU4 ALA5 PRO6 HIS7 VAL8 GLY9 MET10 GLY11 LEU12 ASP13 THR14 ARG15 THR16 GLN17 THR18 TRP19 MET20 SER21 ALA22 GLU23 GLY24 ALA25 TRP26 ARG27 GLN28 VAL29 GLU30 LYS31 VAL32 GLU33 THR34 TRP35 ALA36 LEU37 ARG38 HIS39 PRO40 GLY41 PHE42 THR43 ILE44 LEU45 ALA46 LEU47 PHE48 LEU49 ALA50 HIS51 TYR52 ILE53 GLY54 THR55 SER56 LEU57 THR58 GLN59 LYS60 VAL61 VAL62 ILE63 PHE64 ILE65 LEU66 LEU67 MET68 LEU69 VAL70 THR71 PRO72
Unit 5 MET1 ARG2 CYS3 VAL4 GLY5 VAL6 GLY7 ASN8 ARG9 ASP10 PHE11 VAL12 GLU13 GLY14 LEU15 SER16 GLY17 ALA18 THR19 TRP20 VAL21 ASP22 VAL23 VAL24 LEU25 GLU26 HIS27 GLY28 GLY29 CYS30 VAL31 THR32 THR33 MET34 ALA35 LYS36 ASN37 LYS38 PRO39 THR40 LEU41 ASP42 ILE43 GLU44 LEU45 GLN46 LYS47 THR48 GLU49 ALA50 THR51 GLN52 LEU53 ALA54 THR55 LEU56 ARG57 LYS58 LEU59 CYS60 ILE61 GLU62 GLY63 LYS64 ILE65 THR66 ASN67 ILE68 THR69 THR70 ASP71 SER72 ARG73 CYS74 PRO75 THR76 GLN77 GLY78 GLU79 ALA80 VAL81 LEU82 PRO83 GLU84 GLU85 GLN86 ASP87 GLN88 ASN89 TYR90 VAL91 CYS92 LYS93 HIS94 THR95 TYR96 VAL97 ASP98 ARG99 GLY100 TRP101 GLY102 ASN103 GLY104 CYS105 GLY106 LEU107 PHE108 GLY109 LYS110 GLY111 SER112 LEU113 VAL114 THR115 CYS116 ALA117 LYS118 PHE119 GLN120 CYS121 LEU122 GLU123 PRO124 ILE125 GLU126 GLY127 LYS128 VAL129 VAL130 GLN131 TYR132 GLU133 ASN134 LEU135 LYS136 TYR137 THR138 VAL139 ILE140 ILE141 THR142 VAL143 HIS144 THR145 GLY146 ASP147 GLN148 HIS149 GLN150 VAL151 GLY152 ASN153 GLU154 THR155 GLN156 GLY157 VAL158 THR159 ALA160 GLU161 ILE162 THR163 PRO164 GLN165 ALA166 SER167 THR168 THR169 GLU170 ALA171 ILE172 LEU173 PRO174 GLU175 TYR176 GLY177 THR178 LEU179 GLY180 LEU181 GLU182 CYS183 SER184 PRO185 ARG186 THR187 GLY188 LEU189 ASP190 PHE191 ASN192 GLU193 MET194 ILE195 LEU196 LEU197 THR198 MET199 LYS200 ASN201 LYS202 ALA203 TRP204 MET205 VAL206 HIS207 ARG208 GLN209 TRP210 PHE211 PHE212 ASP213 LEU214 PRO215 LEU216 PRO217 TRP218 ALA219 SER220 GLY221 ALA222 THR223 THR224 GLU225 THR226 PRO227 THR228 TRP229 ASN230 ARG231 LYS232 GLU233 LEU234 LEU235 VAL236 THR237 PHE238 LYS239 ASN240 ALA241 HIS242 ALA243 LYS244 LYS245 GLN246 GLU247 VAL248 VAL249 VAL250 LEU251 GLY252 SER253 GLN254 GLU255 GLY256 ALA257 MET258 HIS259 THR260 ALA261 LEU262 THR263 GLY264 ALA265 THR266 GLU267 ILE268 GLN269 ASN270 SER271 GLY272 GLY273 THR274 SER275 ILE276 PHE277 ALA278 GLY279 HIS280 LEU281 LYS282 CYS283 ARG284 LEU285 LYS286 MET287 ASP288 LYS289 LEU290 GLU291 LEU292 LYS293 GLY294 MET295 SER296 TYR297 ALA298 MET299 CYS300 THR301 ASN302 THR303 PHE304 VAL305 LEU306 LYS307 LYS308 GLU309 VAL310 SER311 GLU312 THR313 GLN314 HIS315 GLY316 THR317 ILE318 LEU319 ILE320 LYS321 VAL322 GLU323 TYR324 LYS325 GLY326 GLU327 ASP328 ALA329 PRO330 CYS331 LYS332 ILE333 PRO334 PHE335 SER336 THR337 GLU338 ASP339 GLY340 GLN341 GLY342 LYS343 ALA344 HIS345 ASN346 GLY347 ARG348 LEU349 ILE350 THR351 ALA352 ASN353 PRO354 VAL355 VAL356 THR357 LYS358 LYS359 GLU360 GLU361 PRO362 VAL363 ASN364 ILE365 GLU366 ALA367 GLU368 PRO369 PRO370 PHE371 GLY372 GLU373 SER374 ASN375 ILE376 VAL377 ILE378 GLY379 ILE380 GLY381 ASP382 ASN383 ALA384 LEU385 LYS386 ILE387 ASN388 TRP389 TYR390 LYS391 LYS392 GLY393 SER394 SER395 ILE396 GLY397 LYS398 MET399 PHE400 GLU401 ALA402 THR403 ALA404 ARG405 GLY406 ALA407 ARG408 ARG409 MET410 ALA411 ILE412 LEU413 GLY414 ASP415 THR416 ALA417 TRP418 ASP419 PHE420 GLY421 SER422 VAL423 GLY424 GLY425 VAL426 LEU427 ASN428 SER429 LEU430 GLY431 LYS432 MET433 VAL434 HIS435 GLN436 ILE437 PHE438 GLY439 SER440 ALA441 TYR442 THR443 ALA444 LEU445 PHE446 SER447 GLY448 VAL449 SER450 TRP451 VAL452 MET453 LYS454 ILE455 GLY456 ILE457 GLY458 VAL459 LEU460 LEU461 THR462 TRP463 ILE464 GLY465 LEU466 ASN467 SER468 LYS469 ASN470 THR471 SER472 MET473 SER474 PHE475 SER476 CYS477 ILE478 ALA479 ILE480 GLY481 ILE482 ILE483 THR484 LEU485 TYR486 LEU487 GLY488 ALA489 VAL490 VAL491 GLN492 ALA493
Unit 6 SER1 VAL2 ALA3 LEU4 ALA5 PRO6 HIS7 VAL8 GLY9 MET10 GLY11 LEU12 ASP13 THR14 ARG15 THR16 GLN17 THR18 TRP19 MET20 SER21 ALA22 GLU23 GLY24 ALA25 TRP26 ARG27 GLN28 VAL29 GLU30 LYS31 VAL32 GLU33 THR34 TRP35 ALA36 LEU37 ARG38 HIS39 PRO40 GLY41 PHE42 THR43 ILE44 LEU45 ALA46 LEU47 PHE48 LEU49 ALA50 HIS51 TYR52 ILE53 GLY54 THR55 SER56 LEU57 THR58 GLN59 LYS60 VAL61 VAL62 ILE63 PHE64 ILE65 LEU66 LEU67 MET68 LEU69 VAL70 THR71 PRO72
Unit 7 GLN10 LEU11 VAL12 GLN13 SER14 GLY15 ALA16 GLU17 LEU18 ARG19 LYS20 PRO21 GLY22 SER23 SER24 VAL25 LYS26 VAL27 SER28 CYS29 ARG30 ALA31 SER32 GLY33 GLY34 THR35 PHE36 SER37 SER38 TYR39 THR40 PHE41 ASN42 TRP43 VAL44 ARG45 GLN46 ALA47 PRO48 GLY49 GLN50 GLY51 LEU52 GLU53 TRP54 MET55 GLY56 GLY57 PHE58 ILE59 PRO60 VAL61 PHE62 ASN63 THR64 THR65 ASN66 TYR67 ALA68 GLN69 THR70 PHE71 GLN72 GLY73 ARG74 VAL75 THR76 ILE77 ALA78 ALA79 ASP80 LYS81 SER82 THR83 SER84 THR85 ALA86 TYR87 MET88 GLU89 LEU90 ARG91 SER92 LEU93 ARG94 SER95 GLU96 ASP97 THR98 ALA99 ILE100 TYR101 TYR102 CYS103 ALA104 ARG105 ASP106 LYS107 GLU108 LEU109 LEU110 PHE111 SER112 ARG113 ALA114 PHE115 ASP116 ILE117 TRP118 GLY119 GLN120 GLY121 THR122 MET123 VAL124 THR125 VAL126 SER127 SER128 ALA129 GLY130 THR131 LYS132 GLY133 PRO134 SER135
Unit 8 ASP8 ILE9 GLN10 MET11 THR12 GLN13 SER14 PRO15 SER16 SER17 LEU18 SER19 ALA20 SER21 VAL22 GLY23 ASP24 ARG25 VAL26 THR27 ILE28 THR29 CYS30 ARG31 ALA32 SER33 GLN34 SER35 ILE36 SER37 ARG38 TYR39 LEU40 ASN41 TRP42 TYR43 GLN44 ARG45 GLU46 PRO47 GLY48 LYS49 ALA50 PRO51 LYS52 LEU53 LEU54 ILE55 TYR56 GLY57 ALA58 SER59 SER60 LEU61 GLN62 ARG63 GLY64 VAL65 PRO66 SER67 ARG68 PHE69 SER70 GLY71 SER72 GLY73 SER74 GLY75 THR76 ASP77 PHE78 THR79 LEU80 THR81 ILE82 SER83 SER84 LEU85 GLN86 PRO87 GLU88 ASP89 PHE90 ALA91 THR92 TYR93 TYR94 CYS95 GLN96 GLN97 SER98 GLN99 TYR100 ILE101 PRO102 TYR103 THR104 PHE105 GLY106 GLN107 GLY108 THR109 LYS110 VAL111 ASP112 ILE113 LYS114 ARG115 THR116 VAL117 ALA118
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany