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Sequence, Chains, Asymmetric and Biological Units

Title NUCLEOTIDE-FREE KINESIN MOTOR DOMAIN COMPLEXED WITH GMPCPP-M
Keywords KINESIN, MOTOR DOMAIN, RIGOR-CONFORMATION, NUCLEOTIDE-FREE K MICROTUBULE, GMPCPP-MICROTUBULE, TUBULIN, AXONAL TRANSPORT, STRUCTURAL PROTEIN-MOTOR PROTEIN COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3J6H     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TUBULIN ALPHA-1A CHAIN  A 410 3213 0
2  Protein   TUBULIN BETA CHAIN  B 426 3351 0
3  Protein   KINESIN HEAVY CHAIN ISOFORM 5C  K 277 2175 0
4  Ligand   TUBULIN ALPHA-1A CHAIN  A 2 0 33
5  Ligand   TUBULIN BETA CHAIN  B 2 0 33
6  Ligand   KINESIN HEAVY CHAIN ISOFORM 5C  K 1 0 5
total       1118 8739 71
Proteins
Unit 1 ARG2 GLU3 CYS4 ILE5 SER6 ILE7 HIS8 VAL9 GLY10 GLN11 ALA12 GLY13 VAL14 GLN15 ILE16 GLY17 ASN18 ALA19 CYS20 TRP21 GLU22 LEU23 TYR24 CYS25 LEU26 GLU27 HIS28 GLY29 ILE30 GLN31 PRO32 ASP33 GLY34 HIS61 VAL62 PRO63 ARG64 ALA65 VAL66 PHE67 VAL68 ASP69 LEU70 GLU71 PRO72 THR73 VAL74 ILE75 ASP76 GLU77 VAL78 ARG79 THR80 GLY81 THR82 TYR83 ARG84 GLN85 LEU86 PHE87 HIS88 PRO89 GLU90 GLN91 LEU92 ILE93 THR94 GLY95 LYS96 GLU97 ASP98 ALA99 ALA100 ASN101 ASN102 TYR103 ALA104 ARG105 GLY106 HIS107 TYR108 THR109 ILE110 GLY111 LYS112 GLU113 ILE114 ILE115 ASP116 LEU117 VAL118 LEU119 ASP120 ARG121 ILE122 ARG123 LYS124 LEU125 ALA126 ASP127 GLN128 CYS129 THR130 GLY131 LEU132 GLN133 GLY134 PHE135 SER136 VAL137 PHE138 HIS139 SER140 PHE141 GLY142 GLY143 GLY144 THR145 GLY146 SER147 GLY148 PHE149 THR150 SER151 LEU152 LEU153 MET154 GLU155 ARG156 LEU157 SER158 VAL159 ASP160 TYR161 GLY162 LYS163 LYS164 SER165 LYS166 LEU167 GLU168 PHE169 SER170 ILE171 TYR172 PRO173 ALA174 PRO175 GLN176 VAL177 SER178 THR179 ALA180 VAL181 VAL182 GLU183 PRO184 TYR185 ASN186 SER187 ILE188 LEU189 THR190 THR191 HIS192 THR193 THR194 LEU195 GLU196 HIS197 SER198 ASP199 CYS200 ALA201 PHE202 MET203 VAL204 ASP205 ASN206 GLU207 ALA208 ILE209 TYR210 ASP211 ILE212 CYS213 ARG214 ARG215 ASN216 LEU217 ASP218 ILE219 GLU220 ARG221 PRO222 THR223 TYR224 THR225 ASN226 LEU227 ASN228 ARG229 LEU230 ILE231 GLY232 GLN233 ILE234 VAL235 SER236 SER237 ILE238 THR239 ALA240 SER241 LEU242 ARG243 PHE244 ASP245 GLY246 ALA247 LEU248 ASN249 VAL250 ASP251 LEU252 THR253 GLU254 PHE255 GLN256 THR257 ASN258 LEU259 VAL260 PRO261 TYR262 PRO263 ARG264 GLY265 HIS266 PHE267 PRO268 LEU269 ALA270 THR271 TYR272 ALA273 PRO274 VAL275 ILE276 SER277 ALA278 GLU279 LYS280 ALA281 TYR282 HIS283 GLU284 GLN285 LEU286 SER287 VAL288 ALA289 GLU290 ILE291 THR292 ASN293 ALA294 CYS295 PHE296 GLU297 PRO298 ALA299 ASN300 GLN301 MET302 VAL303 LYS304 CYS305 ASP306 PRO307 ARG308 HIS309 GLY310 LYS311 TYR312 MET313 ALA314 CYS315 CYS316 LEU317 LEU318 TYR319 ARG320 GLY321 ASP322 VAL323 VAL324 PRO325 LYS326 ASP327 VAL328 ASN329 ALA330 ALA331 ILE332 ALA333 THR334 ILE335 LYS336 THR337 LYS338 ARG339 THR340 ILE341 GLN342 PHE343 VAL344 ASP345 TRP346 CYS347 PRO348 THR349 GLY350 PHE351 LYS352 VAL353 GLY354 ILE355 ASN356 TYR357 GLU358 PRO359 PRO360 THR361 VAL362 VAL363 PRO364 GLY365 GLY366 ASP367 LEU368 ALA369 LYS370 VAL371 GLN372 ARG373 ALA374 VAL375 CYS376 MET377 LEU378 SER379 ASN380 THR381 THR382 ALA383 ILE384 ALA385 GLU386 ALA387 TRP388 ALA389 ARG390 LEU391 ASP392 HIS393 LYS394 PHE395 ASP396 LEU397 MET398 TYR399 ALA400 LYS401 ARG402 ALA403 PHE404 VAL405 HIS406 TRP407 TYR408 VAL409 GLY410 GLU411 GLY412 MET413 GLU414 GLU415 GLY416 GLU417 PHE418 SER419 GLU420 ALA421 ARG422 GLU423 ASP424 MET425 ALA426 ALA427 LEU428 GLU429 LYS430 ASP431 TYR432 GLU433 GLU434 VAL435 GLY436 VAL437
Unit 2 ARG2 GLU3 ILE4 VAL5 HIS6 ILE7 GLN8 ALA9 GLY10 GLN11 CYS12 GLY13 ASN14 GLN15 ILE16 GLY17 ALA18 LYS19 PHE20 TRP21 GLU22 VAL23 ILE24 SER25 ASP26 GLU27 HIS28 GLY29 ILE30 ASP31 PRO32 THR33 GLY34 SER35 TYR36 HIS37 GLY38 ASP39 SER40 ASP41 LEU42 GLN43 LEU44 GLU47 ARG48 ILE49 ASN50 VAL51 TYR52 TYR53 ASN54 GLU55 ALA56 ALA57 GLY58 ASN59 LYS60 TYR61 VAL62 PRO63 ARG64 ALA65 ILE66 LEU67 VAL68 ASP69 LEU70 GLU71 PRO72 GLY73 THR74 MET75 ASP76 SER77 VAL78 ARG79 SER80 GLY81 PRO82 PHE83 GLY84 GLN85 ILE86 PHE87 ARG88 PRO89 ASP90 ASN91 PHE92 VAL93 PHE94 GLY95 GLN96 SER97 GLY98 ALA99 GLY100 ASN101 ASN102 TRP103 ALA104 LYS105 GLY106 HIS107 TYR108 THR109 GLU110 GLY111 ALA112 GLU113 LEU114 VAL115 ASP116 SER117 VAL118 LEU119 ASP120 VAL121 VAL122 ARG123 LYS124 GLU125 SER126 GLU127 SER128 CYS129 ASP130 CYS131 LEU132 GLN133 GLY134 PHE135 GLN136 LEU137 THR138 HIS139 SER140 LEU141 GLY142 GLY143 GLY144 THR145 GLY146 SER147 GLY148 MET149 GLY150 THR151 LEU152 LEU153 ILE154 SER155 LYS156 ILE157 ARG158 GLU159 GLU160 TYR161 PRO162 ASP163 ARG164 ILE165 MET166 ASN167 THR168 PHE169 SER170 VAL171 VAL172 PRO173 SER174 PRO175 LYS176 VAL177 SER178 ASP179 THR180 VAL181 VAL182 GLU183 PRO184 TYR185 ASN186 ALA187 THR188 LEU189 SER190 VAL191 HIS192 GLN193 LEU194 VAL195 GLU196 ASN197 THR198 ASP199 GLU200 THR201 TYR202 CYS203 ILE204 ASP205 ASN206 GLU207 ALA208 LEU209 TYR210 ASP211 ILE212 CYS213 PHE214 ARG215 THR216 LEU217 LYS218 LEU219 THR220 THR221 PRO222 THR223 TYR224 GLY225 ASP226 LEU227 ASN228 HIS229 LEU230 VAL231 SER232 ALA233 THR234 MET235 SER236 GLY237 VAL238 THR239 THR240 CYS241 LEU242 ARG243 PHE244 PRO245 GLY246 GLN247 LEU248 ASN249 ALA250 ASP251 LEU252 ARG253 LYS254 LEU255 ALA256 VAL257 ASN258 MET259 VAL260 PRO261 PHE262 PRO263 ARG264 LEU265 HIS266 PHE267 PHE268 MET269 PRO270 GLY271 PHE272 ALA273 PRO274 LEU275 THR276 SER277 ARG278 GLY279 SER280 GLN281 GLN282 TYR283 ARG284 ALA285 LEU286 THR287 VAL288 PRO289 GLU290 LEU291 THR292 GLN293 GLN294 MET295 PHE296 ASP297 ALA298 LYS299 ASN300 MET301 MET302 ALA303 ALA304 CYS305 ASP306 PRO307 ARG308 HIS309 GLY310 ARG311 TYR312 LEU313 THR314 VAL315 ALA316 ALA317 VAL318 PHE319 ARG320 GLY321 ARG322 MET323 SER324 MET325 LYS326 GLU327 VAL328 ASP329 GLU330 GLN331 MET332 LEU333 ASN334 VAL335 GLN336 ASN337 LYS338 ASN339 SER340 SER341 TYR342 PHE343 VAL344 GLU345 TRP346 ILE347 PRO348 ASN349 ASN350 VAL351 LYS352 THR353 ALA354 VAL355 CYS356 ASP357 ILE358 PRO359 PRO360 ARG369 GLY370 LEU371 LYS372 MET373 SER374 ALA375 THR376 PHE377 ILE378 GLY379 ASN380 SER381 THR382 ALA383 ILE384 GLN385 GLU386 LEU387 PHE388 LYS389 ARG390 ILE391 SER392 GLU393 GLN394 PHE395 THR396 ALA397 MET398 PHE399 ARG400 ARG401 LYS402 ALA403 PHE404 LEU405 HIS406 TRP407 TYR408 THR409 GLY410 GLU411 GLY412 MET413 ASP414 GLU415 MET416 GLU417 PHE418 THR419 GLU420 ALA421 GLU422 SER423 ASN424 MET425 ASN426 ASP427 LEU428 VAL429 SER430 GLU431 TYR432 GLN433 GLN434 TYR435 GLN436 ASP437
Unit 3 ALA5 GLU6 CYS7 SER8 ILE9 LYS10 VAL11 MET12 CYS13 ARG14 PHE15 ARG16 PRO17 LEU18 ASN19 GLU20 ALA21 GLU22 ILE23 LEU24 ARG25 GLY26 ASP27 LYS28 PHE29 ILE30 PRO31 LYS32 PHE33 LYS34 GLY35 GLU36 GLU37 THR38 VAL39 VAL40 ILE41 GLY42 GLN43 GLY44 LYS45 PRO46 TYR47 VAL48 PHE49 ASP50 ARG51 VAL52 LEU53 PRO54 PRO55 ASN56 THR57 THR58 GLN59 GLU60 GLN61 VAL62 TYR63 ASN64 ALA65 CYS66 ALA67 LYS68 GLN69 ILE70 VAL71 LYS72 ASP73 VAL74 LEU75 GLU76 GLY77 TYR78 ASN79 GLY80 THR81 ILE82 PHE83 ALA84 TYR85 GLY86 GLN87 THR88 SER89 SER90 GLY91 LYS92 THR93 HIS94 THR95 MET96 GLU97 GLY98 LYS99 LEU100 HIS101 ASP102 PRO103 GLN104 LEU105 MET106 GLY107 ILE108 ILE109 PRO110 ARG111 ILE112 ALA113 HIS114 ASP115 ILE116 PHE117 ASP118 HIS119 ILE120 TYR121 SER122 MET123 ASP124 GLU125 ASN126 LEU127 GLU128 PHE129 HIS130 ILE131 LYS132 VAL133 SER134 TYR135 PHE136 GLU137 ILE138 TYR139 LEU140 ASP141 LYS142 ILE143 ARG144 ASP145 PRO177 GLU178 GLU179 VAL180 MET181 ASP182 VAL183 ILE184 ASP185 GLU186 GLY187 LYS188 ALA189 ASN190 ARG191 HIS192 VAL193 ALA194 VAL195 THR196 ASN197 MET198 ASN199 GLU200 HIS201 SER202 SER203 ARG204 SER205 HIS206 SER207 ILE208 PHE209 LEU210 ILE211 ASN212 ILE213 LYS214 GLN215 GLU216 ASN217 VAL218 GLU219 THR220 GLU221 LYS222 LYS223 LEU224 SER225 GLY226 LYS227 LEU228 TYR229 LEU230 VAL231 ASP232 LEU233 ALA234 GLY235 SER236 GLU237 LYS238 LYS257 SER258 LEU259 SER260 ALA261 LEU262 GLY263 ASN264 VAL265 ILE266 SER267 ALA268 LEU269 ALA270 GLU271 GLY272 THR273 LYS274 THR275 HIS276 VAL277 PRO278 TYR279 ARG280 ASP281 SER282 LYS283 MET284 THR285 ARG286 ILE287 LEU288 GLN289 ASP290 SER291 LEU292 GLY293 GLY294 ASN295 CYS296 ARG297 THR298 THR299 ILE300 VAL301 ILE302 CYS303 CYS304 SER305 PRO306 SER307 VAL308 PHE309 ASN310 GLU311 ALA312 GLU313 THR314 LYS315 SER316 THR317 LEU318 MET319 PHE320 GLY321 GLN322 ARG323 ALA324 LYS325 THR326 ILE327 LYS328 ASN329 THR330
Ligands
Unit 4 MG501 GTP502
Unit 5 MG601 G2P602
Unit 6 SO4500
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany