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Sequence, Chains, Asymmetric and Biological Units

Title ELECTRON CRYO-MICROSCOPY OF CHIKUNGUNYA VLP IN COMPLEX WITH NEUTRALIZING ANTIBODY FAB M10
Keywords ALPHA VIRUS, CHIKUNGUNYA VLP, NEUTRALIZING ANTIBODY M10, IMM SYSTEM
Experiment ELECTRON MICROSCOPY
Number of Models  1

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        Header     Asymmetric unit     Biological unit  
PDB   3J2Z     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   M10 LIGHT CHAIN  A 212 1633 0
2  Protein   M10 LIGHT CHAIN  C 212 1633 0
3  Protein   M10 LIGHT CHAIN  E 212 1633 0
4  Protein   M10 LIGHT CHAIN  G 212 1633 0
5  Protein   M10 HEAVY CHAIN  B 218 1647 0
6  Protein   M10 HEAVY CHAIN  D 218 1647 0
7  Protein   M10 HEAVY CHAIN  F 218 1647 0
8  Protein   M10 HEAVY CHAIN  H 218 1647 0
total       1720 13120 0
Proteins
Unit 1 GLN1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 ALA9 ILE10 MET11 SER12 ALA13 SER14 PRO15 GLY16 GLU17 LYS18 VAL19 THR20 MET21 THR22 CYS23 SER24 ALA25 SER26 SER27 SER28 VAL29 THR30 TYR31 MET32 TYR33 TRP34 TYR35 GLN36 GLN37 LYS38 PRO39 GLY40 SER41 SER42 PRO43 ARG44 LEU45 LEU46 ILE47 TYR48 ASP49 THR50 SER51 ASN52 LEU53 ALA54 SER55 GLY56 VAL57 PRO58 VAL59 ARG60 PHE61 SER62 GLY63 SER64 GLY65 SER66 GLY67 THR68 SER69 TYR70 SER71 LEU72 THR73 ILE74 SER75 ARG76 MET77 GLU78 ALA79 GLU80 ASP81 ALA82 ALA83 THR84 TYR85 TYR86 CYS87 GLN88 GLN89 ARG90 THR91 ASN92 TYR93 PRO94 LEU95 THR96 PHE97 GLY98 ALA99 GLY100 THR101 LYS102 LEU103 GLU104 LEU105 LYS106 ARG107 ALA108 ASP109 ALA110 ALA111 PRO112 THR113 VAL114 SER115 ILE116 PHE117 PRO118 PRO119 SER120 SER121 GLU122 GLN123 LEU124 THR125 SER126 GLY127 GLY128 ALA129 SER130 VAL131 VAL132 CYS133 PHE134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 LYS141 ASP142 ILE143 ASN144 VAL145 LYS146 TRP147 LYS148 ILE149 ASP150 GLY151 SER152 GLU153 ARG154 GLN155 ASN156 GLY157 VAL158 LEU159 ASN160 SER161 TRP162 THR163 ASP164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 MET174 SER175 SER176 THR177 LEU178 THR179 LEU180 THR181 LYS182 ASP183 GLU184 TYR185 GLU186 ARG187 HIS188 ASN189 SER190 TYR191 THR192 CYS193 GLU194 ALA195 THR196 HIS197 LYS198 THR199 SER200 THR201 SER202 PRO203 ILE204 VAL205 LYS206 SER207 PHE208 ASN209 ARG210 ASN211 GLU212
Unit 2 GLN1001 ILE1002 VAL1003 LEU1004 THR1005 GLN1006 SER1007 PRO1008 ALA1009 ILE1010 MET1011 SER1012 ALA1013 SER1014 PRO1015 GLY1016 GLU1017 LYS1018 VAL1019 THR1020 MET1021 THR1022 CYS1023 SER1024 ALA1025 SER1026 SER1027 SER1028 VAL1029 THR1030 TYR1031 MET1032 TYR1033 TRP1034 TYR1035 GLN1036 GLN1037 LYS1038 PRO1039 GLY1040 SER1041 SER1042 PRO1043 ARG1044 LEU1045 LEU1046 ILE1047 TYR1048 ASP1049 THR1050 SER1051 ASN1052 LEU1053 ALA1054 SER1055 GLY1056 VAL1057 PRO1058 VAL1059 ARG1060 PHE1061 SER1062 GLY1063 SER1064 GLY1065 SER1066 GLY1067 THR1068 SER1069 TYR1070 SER1071 LEU1072 THR1073 ILE1074 SER1075 ARG1076 MET1077 GLU1078 ALA1079 GLU1080 ASP1081 ALA1082 ALA1083 THR1084 TYR1085 TYR1086 CYS1087 GLN1088 GLN1089 ARG1090 THR1091 ASN1092 TYR1093 PRO1094 LEU1095 THR1096 PHE1097 GLY1098 ALA1099 GLY1100 THR1101 LYS1102 LEU1103 GLU1104 LEU1105 LYS1106 ARG1107 ALA1108 ASP1109 ALA1110 ALA1111 PRO1112 THR1113 VAL1114 SER1115 ILE1116 PHE1117 PRO1118 PRO1119 SER1120 SER1121 GLU1122 GLN1123 LEU1124 THR1125 SER1126 GLY1127 GLY1128 ALA1129 SER1130 VAL1131 VAL1132 CYS1133 PHE1134 LEU1135 ASN1136 ASN1137 PHE1138 TYR1139 PRO1140 LYS1141 ASP1142 ILE1143 ASN1144 VAL1145 LYS1146 TRP1147 LYS1148 ILE1149 ASP1150 GLY1151 SER1152 GLU1153 ARG1154 GLN1155 ASN1156 GLY1157 VAL1158 LEU1159 ASN1160 SER1161 TRP1162 THR1163 ASP1164 GLN1165 ASP1166 SER1167 LYS1168 ASP1169 SER1170 THR1171 TYR1172 SER1173 MET1174 SER1175 SER1176 THR1177 LEU1178 THR1179 LEU1180 THR1181 LYS1182 ASP1183 GLU1184 TYR1185 GLU1186 ARG1187 HIS1188 ASN1189 SER1190 TYR1191 THR1192 CYS1193 GLU1194 ALA1195 THR1196 HIS1197 LYS1198 THR1199 SER1200 THR1201 SER1202 PRO1203 ILE1204 VAL1205 LYS1206 SER1207 PHE1208 ASN1209 ARG1210 ASN1211 GLU1212
Unit 3 GLN2001 ILE2002 VAL2003 LEU2004 THR2005 GLN2006 SER2007 PRO2008 ALA2009 ILE2010 MET2011 SER2012 ALA2013 SER2014 PRO2015 GLY2016 GLU2017 LYS2018 VAL2019 THR2020 MET2021 THR2022 CYS2023 SER2024 ALA2025 SER2026 SER2027 SER2028 VAL2029 THR2030 TYR2031 MET2032 TYR2033 TRP2034 TYR2035 GLN2036 GLN2037 LYS2038 PRO2039 GLY2040 SER2041 SER2042 PRO2043 ARG2044 LEU2045 LEU2046 ILE2047 TYR2048 ASP2049 THR2050 SER2051 ASN2052 LEU2053 ALA2054 SER2055 GLY2056 VAL2057 PRO2058 VAL2059 ARG2060 PHE2061 SER2062 GLY2063 SER2064 GLY2065 SER2066 GLY2067 THR2068 SER2069 TYR2070 SER2071 LEU2072 THR2073 ILE2074 SER2075 ARG2076 MET2077 GLU2078 ALA2079 GLU2080 ASP2081 ALA2082 ALA2083 THR2084 TYR2085 TYR2086 CYS2087 GLN2088 GLN2089 ARG2090 THR2091 ASN2092 TYR2093 PRO2094 LEU2095 THR2096 PHE2097 GLY2098 ALA2099 GLY2100 THR2101 LYS2102 LEU2103 GLU2104 LEU2105 LYS2106 ARG2107 ALA2108 ASP2109 ALA2110 ALA2111 PRO2112 THR2113 VAL2114 SER2115 ILE2116 PHE2117 PRO2118 PRO2119 SER2120 SER2121 GLU2122 GLN2123 LEU2124 THR2125 SER2126 GLY2127 GLY2128 ALA2129 SER2130 VAL2131 VAL2132 CYS2133 PHE2134 LEU2135 ASN2136 ASN2137 PHE2138 TYR2139 PRO2140 LYS2141 ASP2142 ILE2143 ASN2144 VAL2145 LYS2146 TRP2147 LYS2148 ILE2149 ASP2150 GLY2151 SER2152 GLU2153 ARG2154 GLN2155 ASN2156 GLY2157 VAL2158 LEU2159 ASN2160 SER2161 TRP2162 THR2163 ASP2164 GLN2165 ASP2166 SER2167 LYS2168 ASP2169 SER2170 THR2171 TYR2172 SER2173 MET2174 SER2175 SER2176 THR2177 LEU2178 THR2179 LEU2180 THR2181 LYS2182 ASP2183 GLU2184 TYR2185 GLU2186 ARG2187 HIS2188 ASN2189 SER2190 TYR2191 THR2192 CYS2193 GLU2194 ALA2195 THR2196 HIS2197 LYS2198 THR2199 SER2200 THR2201 SER2202 PRO2203 ILE2204 VAL2205 LYS2206 SER2207 PHE2208 ASN2209 ARG2210 ASN2211 GLU2212
Unit 4 GLN3001 ILE3002 VAL3003 LEU3004 THR3005 GLN3006 SER3007 PRO3008 ALA3009 ILE3010 MET3011 SER3012 ALA3013 SER3014 PRO3015 GLY3016 GLU3017 LYS3018 VAL3019 THR3020 MET3021 THR3022 CYS3023 SER3024 ALA3025 SER3026 SER3027 SER3028 VAL3029 THR3030 TYR3031 MET3032 TYR3033 TRP3034 TYR3035 GLN3036 GLN3037 LYS3038 PRO3039 GLY3040 SER3041 SER3042 PRO3043 ARG3044 LEU3045 LEU3046 ILE3047 TYR3048 ASP3049 THR3050 SER3051 ASN3052 LEU3053 ALA3054 SER3055 GLY3056 VAL3057 PRO3058 VAL3059 ARG3060 PHE3061 SER3062 GLY3063 SER3064 GLY3065 SER3066 GLY3067 THR3068 SER3069 TYR3070 SER3071 LEU3072 THR3073 ILE3074 SER3075 ARG3076 MET3077 GLU3078 ALA3079 GLU3080 ASP3081 ALA3082 ALA3083 THR3084 TYR3085 TYR3086 CYS3087 GLN3088 GLN3089 ARG3090 THR3091 ASN3092 TYR3093 PRO3094 LEU3095 THR3096 PHE3097 GLY3098 ALA3099 GLY3100 THR3101 LYS3102 LEU3103 GLU3104 LEU3105 LYS3106 ARG3107 ALA3108 ASP3109 ALA3110 ALA3111 PRO3112 THR3113 VAL3114 SER3115 ILE3116 PHE3117 PRO3118 PRO3119 SER3120 SER3121 GLU3122 GLN3123 LEU3124 THR3125 SER3126 GLY3127 GLY3128 ALA3129 SER3130 VAL3131 VAL3132 CYS3133 PHE3134 LEU3135 ASN3136 ASN3137 PHE3138 TYR3139 PRO3140 LYS3141 ASP3142 ILE3143 ASN3144 VAL3145 LYS3146 TRP3147 LYS3148 ILE3149 ASP3150 GLY3151 SER3152 GLU3153 ARG3154 GLN3155 ASN3156 GLY3157 VAL3158 LEU3159 ASN3160 SER3161 TRP3162 THR3163 ASP3164 GLN3165 ASP3166 SER3167 LYS3168 ASP3169 SER3170 THR3171 TYR3172 SER3173 MET3174 SER3175 SER3176 THR3177 LEU3178 THR3179 LEU3180 THR3181 LYS3182 ASP3183 GLU3184 TYR3185 GLU3186 ARG3187 HIS3188 ASN3189 SER3190 TYR3191 THR3192 CYS3193 GLU3194 ALA3195 THR3196 HIS3197 LYS3198 THR3199 SER3200 THR3201 SER3202 PRO3203 ILE3204 VAL3205 LYS3206 SER3207 PHE3208 ASN3209 ARG3210 ASN3211 GLU3212
Unit 5 GLN1 VAL2 GLN3 LEU4 GLN5 GLN6 PRO7 GLY8 ALA9 GLU10 LEU11 VAL12 ARG13 PRO14 GLY15 SER16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 THR28 PHE29 THR30 SER31 LYS32 TRP33 MET34 HIS35 TRP36 VAL37 LYS38 GLN39 ARG40 PRO41 ILE42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 ASN50 ILE51 ASP52 PRO53 SER54 ASP55 SER56 GLU57 THR58 HIS59 TYR60 ASN61 GLN62 LYS63 PHE64 LYS65 ASP66 LYS67 ALA68 THR69 LEU70 THR71 VAL72 ASP73 LYS74 SER75 SER76 SER77 THR78 ALA79 TYR80 MET81 GLN82 LEU83 SER84 SER85 LEU86 THR87 SER88 GLU89 ASP90 SER91 ALA92 VAL93 TYR94 TYR95 CYS96 ALA97 ARG98 GLY99 VAL100 THR101 ARG102 GLY103 TYR104 PHE105 ASP106 VAL107 TRP108 GLY109 THR110 GLY111 THR112 THR113 VAL114 THR115 VAL116 SER117 SER118 ALA119 LYS120 THR121 THR122 ALA123 PRO124 SER125 VAL126 TYR127 PRO128 LEU129 ALA130 PRO131 VAL132 CYS133 GLY134 GLY135 THR136 THR137 GLY138 SER139 SER140 VAL141 THR142 LEU143 GLY144 CYS145 LEU146 VAL147 LYS148 GLY149 TYR150 PHE151 PRO152 GLU153 PRO154 VAL155 THR156 LEU157 THR158 TRP159 ASN160 SER161 GLY162 SER163 LEU164 SER165 SER166 GLY167 VAL168 HIS169 THR170 PHE171 PRO172 ALA173 LEU174 LEU175 GLN176 SER177 GLY178 LEU179 TYR180 THR181 LEU182 SER183 SER184 SER185 VAL186 THR187 VAL188 THR189 SER190 ASN191 THR192 TRP193 PRO194 SER195 GLN196 THR197 ILE198 THR199 CYS200 ASN201 VAL202 ALA203 HIS204 PRO205 ALA206 SER207 SER208 THR209 LYS210 VAL211 ASP212 LYS213 LYS214 ILE215 GLU216 PRO217 ARG218
Unit 6 GLN1001 VAL1002 GLN1003 LEU1004 GLN1005 GLN1006 PRO1007 GLY1008 ALA1009 GLU1010 LEU1011 VAL1012 ARG1013 PRO1014 GLY1015 SER1016 SER1017 VAL1018 LYS1019 LEU1020 SER1021 CYS1022 LYS1023 ALA1024 SER1025 GLY1026 TYR1027 THR1028 PHE1029 THR1030 SER1031 LYS1032 TRP1033 MET1034 HIS1035 TRP1036 VAL1037 LYS1038 GLN1039 ARG1040 PRO1041 ILE1042 GLN1043 GLY1044 LEU1045 GLU1046 TRP1047 ILE1048 GLY1049 ASN1050 ILE1051 ASP1052 PRO1053 SER1054 ASP1055 SER1056 GLU1057 THR1058 HIS1059 TYR1060 ASN1061 GLN1062 LYS1063 PHE1064 LYS1065 ASP1066 LYS1067 ALA1068 THR1069 LEU1070 THR1071 VAL1072 ASP1073 LYS1074 SER1075 SER1076 SER1077 THR1078 ALA1079 TYR1080 MET1081 GLN1082 LEU1083 SER1084 SER1085 LEU1086 THR1087 SER1088 GLU1089 ASP1090 SER1091 ALA1092 VAL1093 TYR1094 TYR1095 CYS1096 ALA1097 ARG1098 GLY1099 VAL1100 THR1101 ARG1102 GLY1103 TYR1104 PHE1105 ASP1106 VAL1107 TRP1108 GLY1109 THR1110 GLY1111 THR1112 THR1113 VAL1114 THR1115 VAL1116 SER1117 SER1118 ALA1119 LYS1120 THR1121 THR1122 ALA1123 PRO1124 SER1125 VAL1126 TYR1127 PRO1128 LEU1129 ALA1130 PRO1131 VAL1132 CYS1133 GLY1134 GLY1135 THR1136 THR1137 GLY1138 SER1139 SER1140 VAL1141 THR1142 LEU1143 GLY1144 CYS1145 LEU1146 VAL1147 LYS1148 GLY1149 TYR1150 PHE1151 PRO1152 GLU1153 PRO1154 VAL1155 THR1156 LEU1157 THR1158 TRP1159 ASN1160 SER1161 GLY1162 SER1163 LEU1164 SER1165 SER1166 GLY1167 VAL1168 HIS1169 THR1170 PHE1171 PRO1172 ALA1173 LEU1174 LEU1175 GLN1176 SER1177 GLY1178 LEU1179 TYR1180 THR1181 LEU1182 SER1183 SER1184 SER1185 VAL1186 THR1187 VAL1188 THR1189 SER1190 ASN1191 THR1192 TRP1193 PRO1194 SER1195 GLN1196 THR1197 ILE1198 THR1199 CYS1200 ASN1201 VAL1202 ALA1203 HIS1204 PRO1205 ALA1206 SER1207 SER1208 THR1209 LYS1210 VAL1211 ASP1212 LYS1213 LYS1214 ILE1215 GLU1216 PRO1217 ARG1218
Unit 7 GLN2001 VAL2002 GLN2003 LEU2004 GLN2005 GLN2006 PRO2007 GLY2008 ALA2009 GLU2010 LEU2011 VAL2012 ARG2013 PRO2014 GLY2015 SER2016 SER2017 VAL2018 LYS2019 LEU2020 SER2021 CYS2022 LYS2023 ALA2024 SER2025 GLY2026 TYR2027 THR2028 PHE2029 THR2030 SER2031 LYS2032 TRP2033 MET2034 HIS2035 TRP2036 VAL2037 LYS2038 GLN2039 ARG2040 PRO2041 ILE2042 GLN2043 GLY2044 LEU2045 GLU2046 TRP2047 ILE2048 GLY2049 ASN2050 ILE2051 ASP2052 PRO2053 SER2054 ASP2055 SER2056 GLU2057 THR2058 HIS2059 TYR2060 ASN2061 GLN2062 LYS2063 PHE2064 LYS2065 ASP2066 LYS2067 ALA2068 THR2069 LEU2070 THR2071 VAL2072 ASP2073 LYS2074 SER2075 SER2076 SER2077 THR2078 ALA2079 TYR2080 MET2081 GLN2082 LEU2083 SER2084 SER2085 LEU2086 THR2087 SER2088 GLU2089 ASP2090 SER2091 ALA2092 VAL2093 TYR2094 TYR2095 CYS2096 ALA2097 ARG2098 GLY2099 VAL2100 THR2101 ARG2102 GLY2103 TYR2104 PHE2105 ASP2106 VAL2107 TRP2108 GLY2109 THR2110 GLY2111 THR2112 THR2113 VAL2114 THR2115 VAL2116 SER2117 SER2118 ALA2119 LYS2120 THR2121 THR2122 ALA2123 PRO2124 SER2125 VAL2126 TYR2127 PRO2128 LEU2129 ALA2130 PRO2131 VAL2132 CYS2133 GLY2134 GLY2135 THR2136 THR2137 GLY2138 SER2139 SER2140 VAL2141 THR2142 LEU2143 GLY2144 CYS2145 LEU2146 VAL2147 LYS2148 GLY2149 TYR2150 PHE2151 PRO2152 GLU2153 PRO2154 VAL2155 THR2156 LEU2157 THR2158 TRP2159 ASN2160 SER2161 GLY2162 SER2163 LEU2164 SER2165 SER2166 GLY2167 VAL2168 HIS2169 THR2170 PHE2171 PRO2172 ALA2173 LEU2174 LEU2175 GLN2176 SER2177 GLY2178 LEU2179 TYR2180 THR2181 LEU2182 SER2183 SER2184 SER2185 VAL2186 THR2187 VAL2188 THR2189 SER2190 ASN2191 THR2192 TRP2193 PRO2194 SER2195 GLN2196 THR2197 ILE2198 THR2199 CYS2200 ASN2201 VAL2202 ALA2203 HIS2204 PRO2205 ALA2206 SER2207 SER2208 THR2209 LYS2210 VAL2211 ASP2212 LYS2213 LYS2214 ILE2215 GLU2216 PRO2217 ARG2218
Unit 8 GLN3001 VAL3002 GLN3003 LEU3004 GLN3005 GLN3006 PRO3007 GLY3008 ALA3009 GLU3010 LEU3011 VAL3012 ARG3013 PRO3014 GLY3015 SER3016 SER3017 VAL3018 LYS3019 LEU3020 SER3021 CYS3022 LYS3023 ALA3024 SER3025 GLY3026 TYR3027 THR3028 PHE3029 THR3030 SER3031 LYS3032 TRP3033 MET3034 HIS3035 TRP3036 VAL3037 LYS3038 GLN3039 ARG3040 PRO3041 ILE3042 GLN3043 GLY3044 LEU3045 GLU3046 TRP3047 ILE3048 GLY3049 ASN3050 ILE3051 ASP3052 PRO3053 SER3054 ASP3055 SER3056 GLU3057 THR3058 HIS3059 TYR3060 ASN3061 GLN3062 LYS3063 PHE3064 LYS3065 ASP3066 LYS3067 ALA3068 THR3069 LEU3070 THR3071 VAL3072 ASP3073 LYS3074 SER3075 SER3076 SER3077 THR3078 ALA3079 TYR3080 MET3081 GLN3082 LEU3083 SER3084 SER3085 LEU3086 THR3087 SER3088 GLU3089 ASP3090 SER3091 ALA3092 VAL3093 TYR3094 TYR3095 CYS3096 ALA3097 ARG3098 GLY3099 VAL3100 THR3101 ARG3102 GLY3103 TYR3104 PHE3105 ASP3106 VAL3107 TRP3108 GLY3109 THR3110 GLY3111 THR3112 THR3113 VAL3114 THR3115 VAL3116 SER3117 SER3118 ALA3119 LYS3120 THR3121 THR3122 ALA3123 PRO3124 SER3125 VAL3126 TYR3127 PRO3128 LEU3129 ALA3130 PRO3131 VAL3132 CYS3133 GLY3134 GLY3135 THR3136 THR3137 GLY3138 SER3139 SER3140 VAL3141 THR3142 LEU3143 GLY3144 CYS3145 LEU3146 VAL3147 LYS3148 GLY3149 TYR3150 PHE3151 PRO3152 GLU3153 PRO3154 VAL3155 THR3156 LEU3157 THR3158 TRP3159 ASN3160 SER3161 GLY3162 SER3163 LEU3164 SER3165 SER3166 GLY3167 VAL3168 HIS3169 THR3170 PHE3171 PRO3172 ALA3173 LEU3174 LEU3175 GLN3176 SER3177 GLY3178 LEU3179 TYR3180 THR3181 LEU3182 SER3183 SER3184 SER3185 VAL3186 THR3187 VAL3188 THR3189 SER3190 ASN3191 THR3192 TRP3193 PRO3194 SER3195 GLN3196 THR3197 ILE3198 THR3199 CYS3200 ASN3201 VAL3202 ALA3203 HIS3204 PRO3205 ALA3206 SER3207 SER3208 THR3209 LYS3210 VAL3211 ASP3212 LYS3213 LYS3214 ILE3215 GLU3216 PRO3217 ARG3218
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany