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Sequence, Chains, Asymmetric and Biological Units

Title ELECTRON CRYO-MICROSCOPY OF CHIKUNGUNYA VLP IN COMPLEX WITH NEUTRALIZING ANTIBODY FAB M242
Keywords ALPHA VIRUS, CHIKUNGUNYA VLP, NEUTRALIZING ANTIBODY M242, IM SYSTEM
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3J2X     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   M242 LIGHT CHAIN  A 217 1676 0
2  Protein   M242 HEAVY CHAIN  B 217 1631 0
3  Protein   M242 LIGHT CHAIN  C 217 1676 0
4  Protein   M242 HEAVY CHAIN  D 217 1631 0
5  Protein   M242 LIGHT CHAIN  E 217 1676 0
6  Protein   M242 HEAVY CHAIN  F 217 1631 0
7  Protein   M242 LIGHT CHAIN  G 217 1676 0
8  Protein   M242 HEAVY CHAIN  H 217 1631 0
total       1736 13228 0
Proteins
Unit 1 ASP1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 ALA9 SER10 LEU11 ALA12 VAL13 SER14 LEU15 GLY16 GLN17 ARG18 ALA19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLU27 SER28 VAL29 ASP30 SER31 TYR32 GLY33 ASN34 SER35 PHE36 MET37 ASN38 TRP39 TYR40 GLN41 GLN42 LYS43 PRO44 GLY45 GLN46 PRO47 PRO48 LYS49 LEU50 LEU51 ILE52 TYR53 ARG54 ALA55 SER56 ASN57 LEU58 GLU59 SER60 GLY61 ILE62 PRO63 ALA64 ARG65 PHE66 SER67 GLY68 SER69 GLY70 SER71 ARG72 THR73 ASP74 PHE75 THR76 LEU77 THR78 ILE79 ASN80 PRO81 VAL82 GLU83 ALA84 ASP85 ASP86 VAL87 ALA88 THR89 TYR90 TYR91 CYS92 GLN93 GLN94 SER95 ASN96 GLU97 ASP98 PRO99 PHE100 THR101 PHE102 GLY103 SER104 GLY105 THR106 LYS107 LEU108 GLU109 ILE110 LYS111 ARG112 ALA113 ASP114 ALA115 ALA116 PRO117 THR118 VAL119 SER120 ILE121 PHE122 PRO123 PRO124 SER125 SER126 LYS127 LEU128 GLY129 THR130 SER131 GLY132 GLY133 ALA134 SER135 VAL136 VAL137 CYS138 PHE139 LEU140 ASN141 ASN142 PHE143 TYR144 PRO145 LYS146 ASP147 ILE148 ASN149 VAL150 LYS151 TRP152 LYS153 ILE154 ASP155 GLY156 SER157 GLU158 ARG159 GLN160 ASN161 GLY162 VAL163 LEU164 ASN165 SER166 TRP167 THR168 ASP169 GLN170 ASP171 SER172 LYS173 ASP174 SER175 THR176 TYR177 SER178 MET179 SER180 SER181 THR182 LEU183 THR184 LEU185 THR186 LYS187 ASP188 GLU189 TYR190 GLU191 ARG192 HIS193 ASN194 SER195 TYR196 THR197 CYS198 GLU199 ALA200 THR201 HIS202 LYS203 THR204 SER205 THR206 SER207 PRO208 ILE209 VAL210 LYS211 SER212 PHE213 ASN214 ARG215 ASN216 GLU217
Unit 2 GLN501 VAL502 GLN503 LEU504 GLN505 GLN506 SER507 GLY508 PRO509 GLU510 LEU511 VAL512 LYS513 PRO514 GLY515 VAL516 SER517 VAL518 LYS519 ILE520 SER521 CYS522 LYS523 ALA524 SER525 GLY526 TYR527 SER528 PHE529 THR530 SER531 PHE532 TYR533 ILE534 TYR535 TRP536 VAL537 LYS538 GLN539 ARG540 PRO541 GLY542 GLN543 GLY544 LEU545 GLU546 TRP547 ILE548 GLY549 TRP550 ILE551 PHE552 PRO553 GLY554 SER555 THR556 ASN557 THR558 LYS559 TYR560 ASN561 GLU562 LYS563 PHE564 LYS565 GLY566 LYS567 ALA568 THR569 LEU570 THR571 ALA572 ASP573 THR574 SER575 SER576 SER577 THR578 ALA579 SER580 MET581 GLN582 LEU583 SER584 SER585 LEU586 THR587 SER588 GLU589 ASP590 SER591 ALA592 VAL593 TYR594 PHE595 CYS596 ALA597 ARG598 VAL599 ASP600 GLY601 TYR602 ALA603 MET604 ASP605 TYR606 TRP607 GLY608 GLN609 GLY610 THR611 SER612 VAL613 THR614 VAL615 SER616 SER617 ALA618 LYS619 THR620 THR621 ALA622 PRO623 SER624 VAL625 TYR626 PRO627 LEU628 ALA629 PRO630 VAL631 CYS632 GLY633 ASP634 THR635 THR636 GLY637 SER638 SER639 VAL640 THR641 LEU642 GLY643 CYS644 LEU645 VAL646 LYS647 GLY648 TYR649 PHE650 PRO651 GLU652 PRO653 VAL654 THR655 LEU656 THR657 TRP658 ASN659 SER660 GLY661 SER662 LEU663 SER664 SER665 GLY666 VAL667 HIS668 THR669 PHE670 PRO671 ALA672 VAL673 LEU674 GLN675 SER676 ASP677 LEU678 TYR679 THR680 LEU681 SER682 SER683 SER684 VAL685 THR686 VAL687 THR688 SER689 SER690 THR691 TRP692 PRO693 SER694 GLN695 SER696 ILE697 THR698 CYS699 ASN700 VAL701 ALA702 HIS703 PRO704 ALA705 SER706 SER707 THR708 LYS709 VAL710 ASP711 LYS712 LYS713 ILE714 GLU715 PRO716 ARG717
Unit 3 ASP1001 ILE1002 VAL1003 LEU1004 THR1005 GLN1006 SER1007 PRO1008 ALA1009 SER1010 LEU1011 ALA1012 VAL1013 SER1014 LEU1015 GLY1016 GLN1017 ARG1018 ALA1019 THR1020 ILE1021 SER1022 CYS1023 ARG1024 ALA1025 SER1026 GLU1027 SER1028 VAL1029 ASP1030 SER1031 TYR1032 GLY1033 ASN1034 SER1035 PHE1036 MET1037 ASN1038 TRP1039 TYR1040 GLN1041 GLN1042 LYS1043 PRO1044 GLY1045 GLN1046 PRO1047 PRO1048 LYS1049 LEU1050 LEU1051 ILE1052 TYR1053 ARG1054 ALA1055 SER1056 ASN1057 LEU1058 GLU1059 SER1060 GLY1061 ILE1062 PRO1063 ALA1064 ARG1065 PHE1066 SER1067 GLY1068 SER1069 GLY1070 SER1071 ARG1072 THR1073 ASP1074 PHE1075 THR1076 LEU1077 THR1078 ILE1079 ASN1080 PRO1081 VAL1082 GLU1083 ALA1084 ASP1085 ASP1086 VAL1087 ALA1088 THR1089 TYR1090 TYR1091 CYS1092 GLN1093 GLN1094 SER1095 ASN1096 GLU1097 ASP1098 PRO1099 PHE1100 THR1101 PHE1102 GLY1103 SER1104 GLY1105 THR1106 LYS1107 LEU1108 GLU1109 ILE1110 LYS1111 ARG1112 ALA1113 ASP1114 ALA1115 ALA1116 PRO1117 THR1118 VAL1119 SER1120 ILE1121 PHE1122 PRO1123 PRO1124 SER1125 SER1126 LYS1127 LEU1128 GLY1129 THR1130 SER1131 GLY1132 GLY1133 ALA1134 SER1135 VAL1136 VAL1137 CYS1138 PHE1139 LEU1140 ASN1141 ASN1142 PHE1143 TYR1144 PRO1145 LYS1146 ASP1147 ILE1148 ASN1149 VAL1150 LYS1151 TRP1152 LYS1153 ILE1154 ASP1155 GLY1156 SER1157 GLU1158 ARG1159 GLN1160 ASN1161 GLY1162 VAL1163 LEU1164 ASN1165 SER1166 TRP1167 THR1168 ASP1169 GLN1170 ASP1171 SER1172 LYS1173 ASP1174 SER1175 THR1176 TYR1177 SER1178 MET1179 SER1180 SER1181 THR1182 LEU1183 THR1184 LEU1185 THR1186 LYS1187 ASP1188 GLU1189 TYR1190 GLU1191 ARG1192 HIS1193 ASN1194 SER1195 TYR1196 THR1197 CYS1198 GLU1199 ALA1200 THR1201 HIS1202 LYS1203 THR1204 SER1205 THR1206 SER1207 PRO1208 ILE1209 VAL1210 LYS1211 SER1212 PHE1213 ASN1214 ARG1215 ASN1216 GLU1217
Unit 4 GLN1501 VAL1502 GLN1503 LEU1504 GLN1505 GLN1506 SER1507 GLY1508 PRO1509 GLU1510 LEU1511 VAL1512 LYS1513 PRO1514 GLY1515 VAL1516 SER1517 VAL1518 LYS1519 ILE1520 SER1521 CYS1522 LYS1523 ALA1524 SER1525 GLY1526 TYR1527 SER1528 PHE1529 THR1530 SER1531 PHE1532 TYR1533 ILE1534 TYR1535 TRP1536 VAL1537 LYS1538 GLN1539 ARG1540 PRO1541 GLY1542 GLN1543 GLY1544 LEU1545 GLU1546 TRP1547 ILE1548 GLY1549 TRP1550 ILE1551 PHE1552 PRO1553 GLY1554 SER1555 THR1556 ASN1557 THR1558 LYS1559 TYR1560 ASN1561 GLU1562 LYS1563 PHE1564 LYS1565 GLY1566 LYS1567 ALA1568 THR1569 LEU1570 THR1571 ALA1572 ASP1573 THR1574 SER1575 SER1576 SER1577 THR1578 ALA1579 SER1580 MET1581 GLN1582 LEU1583 SER1584 SER1585 LEU1586 THR1587 SER1588 GLU1589 ASP1590 SER1591 ALA1592 VAL1593 TYR1594 PHE1595 CYS1596 ALA1597 ARG1598 VAL1599 ASP1600 GLY1601 TYR1602 ALA1603 MET1604 ASP1605 TYR1606 TRP1607 GLY1608 GLN1609 GLY1610 THR1611 SER1612 VAL1613 THR1614 VAL1615 SER1616 SER1617 ALA1618 LYS1619 THR1620 THR1621 ALA1622 PRO1623 SER1624 VAL1625 TYR1626 PRO1627 LEU1628 ALA1629 PRO1630 VAL1631 CYS1632 GLY1633 ASP1634 THR1635 THR1636 GLY1637 SER1638 SER1639 VAL1640 THR1641 LEU1642 GLY1643 CYS1644 LEU1645 VAL1646 LYS1647 GLY1648 TYR1649 PHE1650 PRO1651 GLU1652 PRO1653 VAL1654 THR1655 LEU1656 THR1657 TRP1658 ASN1659 SER1660 GLY1661 SER1662 LEU1663 SER1664 SER1665 GLY1666 VAL1667 HIS1668 THR1669 PHE1670 PRO1671 ALA1672 VAL1673 LEU1674 GLN1675 SER1676 ASP1677 LEU1678 TYR1679 THR1680 LEU1681 SER1682 SER1683 SER1684 VAL1685 THR1686 VAL1687 THR1688 SER1689 SER1690 THR1691 TRP1692 PRO1693 SER1694 GLN1695 SER1696 ILE1697 THR1698 CYS1699 ASN1700 VAL1701 ALA1702 HIS1703 PRO1704 ALA1705 SER1706 SER1707 THR1708 LYS1709 VAL1710 ASP1711 LYS1712 LYS1713 ILE1714 GLU1715 PRO1716 ARG1717
Unit 5 ASP2001 ILE2002 VAL2003 LEU2004 THR2005 GLN2006 SER2007 PRO2008 ALA2009 SER2010 LEU2011 ALA2012 VAL2013 SER2014 LEU2015 GLY2016 GLN2017 ARG2018 ALA2019 THR2020 ILE2021 SER2022 CYS2023 ARG2024 ALA2025 SER2026 GLU2027 SER2028 VAL2029 ASP2030 SER2031 TYR2032 GLY2033 ASN2034 SER2035 PHE2036 MET2037 ASN2038 TRP2039 TYR2040 GLN2041 GLN2042 LYS2043 PRO2044 GLY2045 GLN2046 PRO2047 PRO2048 LYS2049 LEU2050 LEU2051 ILE2052 TYR2053 ARG2054 ALA2055 SER2056 ASN2057 LEU2058 GLU2059 SER2060 GLY2061 ILE2062 PRO2063 ALA2064 ARG2065 PHE2066 SER2067 GLY2068 SER2069 GLY2070 SER2071 ARG2072 THR2073 ASP2074 PHE2075 THR2076 LEU2077 THR2078 ILE2079 ASN2080 PRO2081 VAL2082 GLU2083 ALA2084 ASP2085 ASP2086 VAL2087 ALA2088 THR2089 TYR2090 TYR2091 CYS2092 GLN2093 GLN2094 SER2095 ASN2096 GLU2097 ASP2098 PRO2099 PHE2100 THR2101 PHE2102 GLY2103 SER2104 GLY2105 THR2106 LYS2107 LEU2108 GLU2109 ILE2110 LYS2111 ARG2112 ALA2113 ASP2114 ALA2115 ALA2116 PRO2117 THR2118 VAL2119 SER2120 ILE2121 PHE2122 PRO2123 PRO2124 SER2125 SER2126 LYS2127 LEU2128 GLY2129 THR2130 SER2131 GLY2132 GLY2133 ALA2134 SER2135 VAL2136 VAL2137 CYS2138 PHE2139 LEU2140 ASN2141 ASN2142 PHE2143 TYR2144 PRO2145 LYS2146 ASP2147 ILE2148 ASN2149 VAL2150 LYS2151 TRP2152 LYS2153 ILE2154 ASP2155 GLY2156 SER2157 GLU2158 ARG2159 GLN2160 ASN2161 GLY2162 VAL2163 LEU2164 ASN2165 SER2166 TRP2167 THR2168 ASP2169 GLN2170 ASP2171 SER2172 LYS2173 ASP2174 SER2175 THR2176 TYR2177 SER2178 MET2179 SER2180 SER2181 THR2182 LEU2183 THR2184 LEU2185 THR2186 LYS2187 ASP2188 GLU2189 TYR2190 GLU2191 ARG2192 HIS2193 ASN2194 SER2195 TYR2196 THR2197 CYS2198 GLU2199 ALA2200 THR2201 HIS2202 LYS2203 THR2204 SER2205 THR2206 SER2207 PRO2208 ILE2209 VAL2210 LYS2211 SER2212 PHE2213 ASN2214 ARG2215 ASN2216 GLU2217
Unit 6 GLN2501 VAL2502 GLN2503 LEU2504 GLN2505 GLN2506 SER2507 GLY2508 PRO2509 GLU2510 LEU2511 VAL2512 LYS2513 PRO2514 GLY2515 VAL2516 SER2517 VAL2518 LYS2519 ILE2520 SER2521 CYS2522 LYS2523 ALA2524 SER2525 GLY2526 TYR2527 SER2528 PHE2529 THR2530 SER2531 PHE2532 TYR2533 ILE2534 TYR2535 TRP2536 VAL2537 LYS2538 GLN2539 ARG2540 PRO2541 GLY2542 GLN2543 GLY2544 LEU2545 GLU2546 TRP2547 ILE2548 GLY2549 TRP2550 ILE2551 PHE2552 PRO2553 GLY2554 SER2555 THR2556 ASN2557 THR2558 LYS2559 TYR2560 ASN2561 GLU2562 LYS2563 PHE2564 LYS2565 GLY2566 LYS2567 ALA2568 THR2569 LEU2570 THR2571 ALA2572 ASP2573 THR2574 SER2575 SER2576 SER2577 THR2578 ALA2579 SER2580 MET2581 GLN2582 LEU2583 SER2584 SER2585 LEU2586 THR2587 SER2588 GLU2589 ASP2590 SER2591 ALA2592 VAL2593 TYR2594 PHE2595 CYS2596 ALA2597 ARG2598 VAL2599 ASP2600 GLY2601 TYR2602 ALA2603 MET2604 ASP2605 TYR2606 TRP2607 GLY2608 GLN2609 GLY2610 THR2611 SER2612 VAL2613 THR2614 VAL2615 SER2616 SER2617 ALA2618 LYS2619 THR2620 THR2621 ALA2622 PRO2623 SER2624 VAL2625 TYR2626 PRO2627 LEU2628 ALA2629 PRO2630 VAL2631 CYS2632 GLY2633 ASP2634 THR2635 THR2636 GLY2637 SER2638 SER2639 VAL2640 THR2641 LEU2642 GLY2643 CYS2644 LEU2645 VAL2646 LYS2647 GLY2648 TYR2649 PHE2650 PRO2651 GLU2652 PRO2653 VAL2654 THR2655 LEU2656 THR2657 TRP2658 ASN2659 SER2660 GLY2661 SER2662 LEU2663 SER2664 SER2665 GLY2666 VAL2667 HIS2668 THR2669 PHE2670 PRO2671 ALA2672 VAL2673 LEU2674 GLN2675 SER2676 ASP2677 LEU2678 TYR2679 THR2680 LEU2681 SER2682 SER2683 SER2684 VAL2685 THR2686 VAL2687 THR2688 SER2689 SER2690 THR2691 TRP2692 PRO2693 SER2694 GLN2695 SER2696 ILE2697 THR2698 CYS2699 ASN2700 VAL2701 ALA2702 HIS2703 PRO2704 ALA2705 SER2706 SER2707 THR2708 LYS2709 VAL2710 ASP2711 LYS2712 LYS2713 ILE2714 GLU2715 PRO2716 ARG2717
Unit 7 ASP3001 ILE3002 VAL3003 LEU3004 THR3005 GLN3006 SER3007 PRO3008 ALA3009 SER3010 LEU3011 ALA3012 VAL3013 SER3014 LEU3015 GLY3016 GLN3017 ARG3018 ALA3019 THR3020 ILE3021 SER3022 CYS3023 ARG3024 ALA3025 SER3026 GLU3027 SER3028 VAL3029 ASP3030 SER3031 TYR3032 GLY3033 ASN3034 SER3035 PHE3036 MET3037 ASN3038 TRP3039 TYR3040 GLN3041 GLN3042 LYS3043 PRO3044 GLY3045 GLN3046 PRO3047 PRO3048 LYS3049 LEU3050 LEU3051 ILE3052 TYR3053 ARG3054 ALA3055 SER3056 ASN3057 LEU3058 GLU3059 SER3060 GLY3061 ILE3062 PRO3063 ALA3064 ARG3065 PHE3066 SER3067 GLY3068 SER3069 GLY3070 SER3071 ARG3072 THR3073 ASP3074 PHE3075 THR3076 LEU3077 THR3078 ILE3079 ASN3080 PRO3081 VAL3082 GLU3083 ALA3084 ASP3085 ASP3086 VAL3087 ALA3088 THR3089 TYR3090 TYR3091 CYS3092 GLN3093 GLN3094 SER3095 ASN3096 GLU3097 ASP3098 PRO3099 PHE3100 THR3101 PHE3102 GLY3103 SER3104 GLY3105 THR3106 LYS3107 LEU3108 GLU3109 ILE3110 LYS3111 ARG3112 ALA3113 ASP3114 ALA3115 ALA3116 PRO3117 THR3118 VAL3119 SER3120 ILE3121 PHE3122 PRO3123 PRO3124 SER3125 SER3126 LYS3127 LEU3128 GLY3129 THR3130 SER3131 GLY3132 GLY3133 ALA3134 SER3135 VAL3136 VAL3137 CYS3138 PHE3139 LEU3140 ASN3141 ASN3142 PHE3143 TYR3144 PRO3145 LYS3146 ASP3147 ILE3148 ASN3149 VAL3150 LYS3151 TRP3152 LYS3153 ILE3154 ASP3155 GLY3156 SER3157 GLU3158 ARG3159 GLN3160 ASN3161 GLY3162 VAL3163 LEU3164 ASN3165 SER3166 TRP3167 THR3168 ASP3169 GLN3170 ASP3171 SER3172 LYS3173 ASP3174 SER3175 THR3176 TYR3177 SER3178 MET3179 SER3180 SER3181 THR3182 LEU3183 THR3184 LEU3185 THR3186 LYS3187 ASP3188 GLU3189 TYR3190 GLU3191 ARG3192 HIS3193 ASN3194 SER3195 TYR3196 THR3197 CYS3198 GLU3199 ALA3200 THR3201 HIS3202 LYS3203 THR3204 SER3205 THR3206 SER3207 PRO3208 ILE3209 VAL3210 LYS3211 SER3212 PHE3213 ASN3214 ARG3215 ASN3216 GLU3217
Unit 8 GLN3501 VAL3502 GLN3503 LEU3504 GLN3505 GLN3506 SER3507 GLY3508 PRO3509 GLU3510 LEU3511 VAL3512 LYS3513 PRO3514 GLY3515 VAL3516 SER3517 VAL3518 LYS3519 ILE3520 SER3521 CYS3522 LYS3523 ALA3524 SER3525 GLY3526 TYR3527 SER3528 PHE3529 THR3530 SER3531 PHE3532 TYR3533 ILE3534 TYR3535 TRP3536 VAL3537 LYS3538 GLN3539 ARG3540 PRO3541 GLY3542 GLN3543 GLY3544 LEU3545 GLU3546 TRP3547 ILE3548 GLY3549 TRP3550 ILE3551 PHE3552 PRO3553 GLY3554 SER3555 THR3556 ASN3557 THR3558 LYS3559 TYR3560 ASN3561 GLU3562 LYS3563 PHE3564 LYS3565 GLY3566 LYS3567 ALA3568 THR3569 LEU3570 THR3571 ALA3572 ASP3573 THR3574 SER3575 SER3576 SER3577 THR3578 ALA3579 SER3580 MET3581 GLN3582 LEU3583 SER3584 SER3585 LEU3586 THR3587 SER3588 GLU3589 ASP3590 SER3591 ALA3592 VAL3593 TYR3594 PHE3595 CYS3596 ALA3597 ARG3598 VAL3599 ASP3600 GLY3601 TYR3602 ALA3603 MET3604 ASP3605 TYR3606 TRP3607 GLY3608 GLN3609 GLY3610 THR3611 SER3612 VAL3613 THR3614 VAL3615 SER3616 SER3617 ALA3618 LYS3619 THR3620 THR3621 ALA3622 PRO3623 SER3624 VAL3625 TYR3626 PRO3627 LEU3628 ALA3629 PRO3630 VAL3631 CYS3632 GLY3633 ASP3634 THR3635 THR3636 GLY3637 SER3638 SER3639 VAL3640 THR3641 LEU3642 GLY3643 CYS3644 LEU3645 VAL3646 LYS3647 GLY3648 TYR3649 PHE3650 PRO3651 GLU3652 PRO3653 VAL3654 THR3655 LEU3656 THR3657 TRP3658 ASN3659 SER3660 GLY3661 SER3662 LEU3663 SER3664 SER3665 GLY3666 VAL3667 HIS3668 THR3669 PHE3670 PRO3671 ALA3672 VAL3673 LEU3674 GLN3675 SER3676 ASP3677 LEU3678 TYR3679 THR3680 LEU3681 SER3682 SER3683 SER3684 VAL3685 THR3686 VAL3687 THR3688 SER3689 SER3690 THR3691 TRP3692 PRO3693 SER3694 GLN3695 SER3696 ILE3697 THR3698 CYS3699 ASN3700 VAL3701 ALA3702 HIS3703 PRO3704 ALA3705 SER3706 SER3707 THR3708 LYS3709 VAL3710 ASP3711 LYS3712 LYS3713 ILE3714 GLU3715 PRO3716 ARG3717
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany