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Sequence, Chains, Asymmetric and Biological Units

Title DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT THE ROLE OF RIMM
Keywords RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3J2A     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    N 1533 49446 0
total       1533 49446 0

Nucleic acids
Unit 1 A2 A3 U4 U5 G6 A7 A8 G9 A10 G11 U12 U13 U14 G15 A16 U17 C18 A19 U20 G21 G22 C23 U24 C25 A26 G27 A28 U29 U30 G31 A32 A33 C34 G35 C36 U37 G38 G39 C40 G41 G42 C43 A44 G45 G46 C47 C48 U49 A50 A51 C52 A53 C54 A55 U56 G57 C58 A59 A60 G61 U62 C63 G64 A65 A66 C67 G68 G69 U70 A71 A72 C73 A74 G75 G76 A77 A78 G79 A80 A81 G82 C83 U84 U85 G86 C87 U88 U89 C90 U91 U92 U93 G94 C95 U96 G97 A98 C99 G100 A101 G102 U103 G104 G105 C106 G107 G108 A109 C110 G111 G112 G113 U114 G115 A116 G117 U118 A119 A120 U121 G122 U123 C124 U125 G126 G127 G128 A129 A130 A131 C132 U133 G134 C135 C136 U137 G138 A139 U140 G141 G142 A143 G144 G145 G146 G147 G148 A149 U150 A151 A152 C153 U154 A155 C156 U157 G158 G159 A160 A161 A162 C163 G164 G165 U166 A167 G168 C169 U170 A171 A172 U173 A174 C175 C176 G177 C178 A179 U180 A181 A182 C183 G184 U185 C186 G187 C188 A189 A190 G191 A192 C193 C194 A195 A196 A197 G198 A199 G200 G201 G202 G203 G204 A205 C206 C207 U208 U209 C210 G211 G212 G213 C214 C215 U216 C217 U218 U219 G220 C221 C222 A223 U224 C225 G226 G227 A228 U229 G230 U231 G232 C233 C234 C235 A236 G237 A238 U239 G240 G241 G242 A243 U244 U245 A246 G247 C248 U249 A250 G251 U252 A253 G254 G255 U256 G257 G258 G259 G260 U261 A262 A263 C264 G265 G266 C267 U268 C269 A270 C271 C272 U273 A274 G275 G276 C277 G278 A279 C280 G281 A282 U283 C284 C285 C286 U287 A288 G289 C290 U291 G292 G293 U294 C295 U296 G297 A298 G299 A300 G301 G302 A303 U304 G305 A306 C307 C308 A309 G310 C311 C312 A313 C314 A315 C316 U317 G318 G319 A320 A321 C322 U323 G324 A325 G326 A327 C328 A329 C330 G331 G332 U333 C334 C335 A336 G337 A338 C339 U340 C341 C342 U343 A344 C345 G346 G347 G348 A349 G350 G351 C352 A353 G354 C355 A356 G357 U358 G359 G360 G361 G362 A363 A364 U365 A366 U367 U368 G369 C370 A371 C372 A373 A374 U375 G376 G377 G378 C379 G380 C381 A382 A383 G384 C385 C386 U387 G388 A389 U390 G391 C392 A393 G394 C395 C396 A397 U398 G399 C400 C401 G402 C403 G404 U405 G406 U407 A408 U409 G410 A411 A412 G413 A414 A415 G416 G417 C418 C419 U420 U421 C422 G423 G424 G425 U426 U427 G428 U429 A430 A431 A432 G433 U434 A435 C436 U437 U438 U439 C440 A441 G442 C443 G444 G445 G446 G447 A448 G449 G450 A451 A452 G453 G454 G455 A456 G457 U458 A459 A460 A461 G462 U463 U464 A465 A466 U467 A468 C469 C470 U471 U472 U473 G474 C475 U476 C477 A478 U479 U480 G481 A482 C483 G484 U485 U486 A487 C488 C489 C490 G491 C492 A493 G494 A495 A496 G497 A498 A499 G500 C501 A502 C503 C504 G505 G506 C507 U508 A509 A510 C511 U512 C513 C514 G515 U516 G517 C518 C519 A520 G521 C522 A523 G524 C525 C526 G527 C528 G529 G530 U531 A532 A533 U534 A535 C536 G537 G538 A539 G540 G541 G542 U543 G544 C545 A546 A547 G548 C549 G550 U551 U552 A553 A554 U555 C556 G557 G558 A559 A560 U561 U562 A563 C564 U565 G566 G567 G568 C569 G570 U571 A572 A573 A574 G575 C576 G577 C578 A579 C580 G581 C582 A583 G584 G585 C586 G587 G588 U589 U590 U591 G592 U593 U594 A595 A596 G597 U598 C599 A600 G601 A602 U603 G604 U605 G606 A607 A608 A609 U610 C611 C612 C613 C614 G615 G616 G617 C618 U619 C620 A621 A622 C623 C624 U625 G626 G627 G628 A629 A630 C631 U632 G633 C634 A635 U636 C637 U638 G639 A640 U641 A642 C643 U644 G645 G646 C647 A648 A649 G650 C651 U652 U653 G654 A655 G656 U657 C658 U659 C660 G661 U662 A663 G664 A665 G666 G667 G668 G669 G670 G671 U672 A673 G674 A675 A676 U677 U678 C679 C680 A681 G682 G683 U684 G685 U686 A687 G688 C689 G690 G691 U692 G693 A694 A695 A696 U697 G698 C699 G700 U701 A702 G703 A704 G705 A706 U707 C708 U709 G710 G711 A712 G713 G714 A715 A716 U717 A718 C719 C720 G721 G722 U723 G724 G725 C726 G727 A728 A729 G730 G731 C732 G733 G734 C735 C736 C737 C738 C739 U740 G741 G742 A743 C744 G745 A746 A747 G748 A749 C750 U751 G752 A753 C754 G755 C756 U757 C758 A759 G760 G761 U762 G763 C764 G765 A766 A767 A768 G769 C770 G771 U772 G773 G774 G775 G776 A777 G778 C779 A780 A781 A782 C783 A784 G785 G786 A787 U788 U789 A790 G791 A792 U793 A794 C795 C796 C797 U798 G799 G800 U801 A802 G803 U804 C805 C806 A807 C808 G809 C810 C811 G812 U813 A814 A815 A816 C817 G818 A819 U820 G821 U822 C823 G824 A825 C826 U827 U828 G829 G830 A831 G832 G833 U834 U835 G836 U837 G838 C839 C840 C841 U842 U843 G844 A845 G846 G847 C848 G849 U850 G851 G852 C853 U854 U855 C856 C857 G858 G859 A860 G861 C862 U863 A864 A865 C866 G867 C868 G869 U870 U871 A872 A873 G874 U875 C876 G877 A878 C879 C880 G881 C882 C883 U884 G885 G886 G887 G888 A889 G890 U891 A892 C893 G894 G895 C896 C897 G898 C899 A900 A901 G902 G903 U904 U905 A906 A907 A908 A909 C910 U911 C912 A913 A914 A915 U916 G917 A918 A919 U920 U921 G922 A923 C924 G925 G926 G927 G928 G929 C930 C931 C932 G933 C934 A935 C936 A937 A938 G939 C940 G941 G942 U943 G944 G945 A946 G947 C948 A949 U950 G951 U952 G953 G954 U955 U956 U957 A958 A959 U960 U961 C962 G963 A964 U965 G966 C967 A968 A969 C970 G971 C972 G973 A974 A975 G976 A977 A978 C979 C980 U981 U982 A983 C984 C985 U986 G987 G988 U989 C990 U991 U992 G993 A994 C995 A996 U997 C998 C999 A1000 C1001 G1002 G1003 A1004 A1005 G1006 U1007 U1008 U1009 U1010 C1011 A1012 G1013 A1014 G1015 A1016 U1017 G1018 A1019 G1020 A1021 A1022 U1023 G1024 U1025 G1026 C1027 C1028 U1029 U1030 C1031 G1032 G1033 G1034 A1035 A1036 C1037 C1038 G1039 U1040 G1041 A1042 G1043 A1044 C1045 A1046 G1047 G1048 U1049 G1050 C1051 U1052 G1053 C1054 A1055 U1056 G1057 G1058 C1059 U1060 G1061 U1062 C1063 G1064 U1065 C1066 A1067 G1068 C1069 U1070 C1071 G1072 U1073 G1074 U1075 U1076 G1077 U1078 G1079 A1080 A1081 A1082 U1083 G1084 U1085 U1086 G1087 G1088 G1089 U1090 U1091 A1092 A1093 G1094 U1095 C1096 C1097 C1098 G1099 C1100 A1101 A1102 C1103 G1104 A1105 G1106 C1107 G1108 C1109 A1110 A1111 C1112 C1113 C1114 U1115 U1116 A1117 U1118 C1119 C1120 U1121 U1122 U1123 G1124 U1125 U1126 G1127 C1128 C1129 A1130 G1131 C1132 G1133 G1134 U1135 C1136 C1137 G1138 G1139 C1140 C1141 G1142 G1143 G1144 A1145 A1146 C1147 U1148 C1149 A1150 A1151 A1152 G1153 G1154 A1155 G1156 A1157 C1158 U1159 G1160 C1161 C1162 A1163 G1164 U1165 G1166 A1167 U1168 A1169 A1170 A1171 C1172 U1173 G1174 G1175 A1176 G1177 G1178 A1179 A1180 G1181 G1182 U1183 G1184 G1185 G1186 G1187 A1188 U1189 G1190 A1191 C1192 G1193 U1194 C1195 A1196 A1197 G1198 U1199 C1200 A1201 U1202 C1203 A1204 U1205 G1206 G1207 C1208 C1209 C1210 U1211 U1212 A1213 C1214 G1215 A1216 C1217 C1218 A1219 G1220 G1221 G1222 C1223 U1224 A1225 C1226 A1227 C1228 A1229 C1230 G1231 U1232 G1233 C1234 U1235 A1236 C1237 A1238 A1239 U1240 G1241 G1242 C1243 G1244 C1245 A1246 U1247 A1248 C1249 A1250 A1251 A1252 G1253 A1254 G1255 A1256 A1257 G1258 C1259 G1260 A1261 C1262 C1263 U1264 C1265 G1266 C1267 G1268 A1269 G1270 A1271 G1272 C1273 A1274 A1275 G1276 C1277 G1278 G1279 A1280 C1281 C1282 U1283 C1284 A1285 U1286 A1287 A1288 A1289 G1290 U1291 G1292 C1293 G1294 U1295 C1296 G1297 U1298 A1299 G1300 U1301 C1302 C1303 G1304 G1305 A1306 U1307 U1308 G1309 G1310 A1311 G1312 U1313 C1314 U1315 G1316 C1317 A1318 A1319 C1320 U1321 C1322 G1323 A1324 C1325 U1326 C1327 C1328 A1329 U1330 G1331 A1332 A1333 G1334 U1335 C1336 G1337 G1338 A1339 A1340 U1341 C1342 G1343 C1344 U1345 A1346 G1347 U1348 A1349 A1350 U1351 C1352 G1353 U1354 G1355 G1356 A1357 U1358 C1359 A1360 G1361 A1362 A1363 U1364 G1365 C1366 C1367 A1368 C1369 G1370 G1371 U1372 G1373 A1374 A1375 U1376 A1377 C1378 G1379 U1380 U1381 C1382 C1383 C1384 G1385 G1386 G1387 C1388 C1389 U1390 U1391 G1392 U1393 A1394 C1395 A1396 C1397 A1398 C1399 C1400 G1401 C1402 C1403 C1404 G1405 U1406 C1407 A1408 C1409 A1410 C1411 C1412 A1413 U1414 G1415 G1416 G1417 A1418 G1419 U1420 G1421 G1422 G1423 U1424 U1425 G1426 C1427 A1428 A1429 A1430 A1431 G1432 A1433 A1434 G1435 U1436 A1437 G1438 G1439 U1440 A1441 G1442 C1443 U1444 U1445 A1446 A1447 C1448 C1449 U1450 U1451 C1452 G1453 G1454 G1455 A1456 G1457 G1458 G1459 C1460 G1461 C1462 U1463 U1464 A1465 C1466 C1467 A1468 C1469 U1470 U1471 U1472 G1473 U1474 G1475 A1476 U1477 U1478 C1479 A1480 U1481 G1482 A1483 C1484 U1485 G1486 G1487 G1488 G1489 U1490 G1491 A1492 A1493 G1494 U1495 C1496 G1497 U1498 A1499 A1500 C1501 A1502 A1503 G1504 G1505 U1506 A1507 A1508 C1509 C1510 G1511 U1512 A1513 G1514 G1515 G1516 G1517 A1518 A1519 C1520 C1521 U1522 G1523 C1524 G1525 G1526 U1527 U1528 G1529 G1530 A1531 U1532 C1533 A1534

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany