3J1S - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF ADENO-ASSOCIATED VIRUS-2 IN COMPLEX WITH NEUTRA MONOCLONAL ANTIBODY A20
• Keywords: EPITOPE, FAB, GENE THERAPY, VIRUS-IMMUNE SYSTEM COMPLEX
• Experiment: ELECTRON MICROSCOPY
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3J1S	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	A20 LIGHT CHAIN	L	214	1657	0
2	Protein	A20 HEAVY CHAIN	H	218	1676	0
3	Protein	CAPSID PROTEIN VP1	A	519	4152	0
total				951	7485	0

Proteins

Unit 1	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 SER 8 SER 9 SER 10 PHE 11 SER 12 VAL 13 SER 14 LEU 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 LYS 24 ALA 25 SER 26 GLU 27 ASP 28 ILE 29 HIS 30 ASN 31 ARG 32 LEU 33 ALA 34 TRP 35 TYR 36 LYS 37 GLN 38 LYS 39 PRO 40 GLY 41 ASN 42 ALA 43 PRO 44 ARG 45 LEU 46 LEU 47 ILE 48 SER 49 GLY 50 ALA 51 THR 52 SER 53 LEU 54 GLU 55 THR 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 LYS 69 ASP 70 TYR 71 THR 72 LEU 73 SER 74 ILE 75 THR 76 SER 77 LEU 78 GLN 79 ASN 80 GLU 81 ASP 82 VAL 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 TYR 91 TRP 92 ILE 93 GLY 94 PRO 95 PHE 96 THR 97 PHE 98 GLY 99 SER 100 GLY 101 THR 102 ASN 103 LEU 104 GLU 105 ILE 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 ASN 212 GLU 213 CYS 214
Unit 2	SER 1 ASP 2 VAL 3 GLN 4 LEU 5 GLN 6 GLU 7 SER 8 GLY 9 PRO 10 ASP 11 LEU 12 VAL 13 LYS 14 PRO 15 SER 16 GLN 17 SER 18 LEU 19 SER 20 LEU 21 THR 22 CYS 23 THR 24 VAL 25 THR 26 GLY 27 TYR 28 SER 29 ILE 30 THR 31 SER 32 GLY 33 TYR 34 THR 35 TRP 36 HIS 37 TRP 38 ILE 39 ARG 40 GLN 41 PHE 42 PRO 43 GLY 44 ASN 45 LYS 46 GLN 47 GLU 48 TRP 49 MET 50 GLY 51 TYR 52 ILE 53 HIS 54 PHE 55 SER 56 GLY 57 TYR 58 THR 59 ASN 60 TYR 61 ASN 62 PRO 63 SER 64 LEU 65 LYS 66 SER 67 ARG 68 VAL 69 SER 70 ILE 71 THR 72 ARG 73 ASP 74 THR 75 SER 76 LYS 77 ASN 78 GLN 79 PHE 80 PHE 81 LEU 82 HIS 83 LEU 84 ASN 85 SER 86 VAL 87 THR 88 THR 89 GLU 90 ASP 91 THR 92 ALA 93 THR 94 TYR 95 TYR 96 CYS 97 ALA 98 ARG 99 GLY 100 ASP 101 TYR 102 GLY 103 TYR 104 GLU 105 TRP 106 PHE 107 THR 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 LEU 115 VAL 116 THR 117 VAL 118 SER 119 ALA 120 ALA 121 LYS 122 THR 123 THR 124 PRO 125 PRO 126 SER 127 VAL 128 TYR 129 PRO 130 LEU 131 ALA 132 PRO 133 GLY 134 CYS 135 GLY 136 ASP 137 THR 138 THR 139 GLY 140 SER 141 SER 142 VAL 143 THR 144 LEU 145 GLY 146 CYS 147 LEU 148 VAL 149 LYS 150 GLY 151 TYR 152 PHE 153 PRO 154 GLU 155 SER 156 VAL 157 THR 158 VAL 159 THR 160 TRP 161 ASN 162 SER 163 GLY 164 SER 165 LEU 166 SER 167 SER 168 SER 169 VAL 170 HIS 171 THR 172 PHE 173 PRO 174 ALA 175 LEU 176 LEU 177 GLN 178 SER 179 GLY 180 LEU 181 TYR 182 THR 183 MET 184 SER 185 SER 186 SER 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 THR 194 TRP 195 PRO 196 SER 197 GLN 198 THR 199 VAL 200 THR 201 CYS 202 SER 203 VAL 204 ALA 205 HIS 206 PRO 207 ALA 208 SER 209 SER 210 THR 211 THR 212 VAL 213 ASP 214 LYS 215 LYS 216 LEU 217 GLU 218
Unit 3	GLY 217 ALA 218 ASP 219 GLY 220 VAL 221 GLY 222 ASN 223 SER 224 SER 225 GLY 226 ASN 227 TRP 228 HIS 229 CYS 230 ASP 231 SER 232 THR 233 TRP 234 MET 235 GLY 236 ASP 237 ARG 238 VAL 239 ILE 240 THR 241 THR 242 SER 243 THR 244 ARG 245 THR 246 TRP 247 ALA 248 LEU 249 PRO 250 THR 251 TYR 252 ASN 253 ASN 254 HIS 255 LEU 256 TYR 257 LYS 258 GLN 259 ILE 260 SER 261 SER 262 GLN 263 SER 264 GLY 265 ALA 266 SER 267 ASN 268 ASP 269 ASN 270 HIS 271 TYR 272 PHE 273 GLY 274 TYR 275 SER 276 THR 277 PRO 278 TRP 279 GLY 280 TYR 281 PHE 282 ASP 283 PHE 284 ASN 285 ARG 286 PHE 287 HIS 288 CYS 289 HIS 290 PHE 291 SER 292 PRO 293 ARG 294 ASP 295 TRP 296 GLN 297 ARG 298 LEU 299 ILE 300 ASN 301 ASN 302 ASN 303 TRP 304 GLY 305 PHE 306 ARG 307 PRO 308 LYS 309 ARG 310 LEU 311 ASN 312 PHE 313 LYS 314 LEU 315 PHE 316 ASN 317 ILE 318 GLN 319 VAL 320 LYS 321 GLU 322 VAL 323 THR 324 GLN 325 ASN 326 ASP 327 GLY 328 THR 329 THR 330 THR 331 ILE 332 ALA 333 ASN 334 ASN 335 LEU 336 THR 337 SER 338 THR 339 VAL 340 GLN 341 VAL 342 PHE 343 THR 344 ASP 345 SER 346 GLU 347 TYR 348 GLN 349 LEU 350 PRO 351 TYR 352 VAL 353 LEU 354 GLY 355 SER 356 ALA 357 HIS 358 GLN 359 GLY 360 CYS 361 LEU 362 PRO 363 PRO 364 PHE 365 PRO 366 ALA 367 ASP 368 VAL 369 PHE 370 MET 371 VAL 372 PRO 373 GLN 374 TYR 375 GLY 376 TYR 377 LEU 378 THR 379 LEU 380 ASN 381 ASN 382 GLY 383 SER 384 GLN 385 ALA 386 VAL 387 GLY 388 ARG 389 SER 390 SER 391 PHE 392 TYR 393 CYS 394 LEU 395 GLU 396 TYR 397 PHE 398 PRO 399 SER 400 GLN 401 MET 402 LEU 403 ARG 404 THR 405 GLY 406 ASN 407 ASN 408 PHE 409 THR 410 PHE 411 SER 412 TYR 413 THR 414 PHE 415 GLU 416 ASP 417 VAL 418 PRO 419 PHE 420 HIS 421 SER 422 SER 423 TYR 424 ALA 425 HIS 426 SER 427 GLN 428 SER 429 LEU 430 ASP 431 ARG 432 LEU 433 MET 434 ASN 435 PRO 436 LEU 437 ILE 438 ASP 439 GLN 440 TYR 441 LEU 442 TYR 443 TYR 444 LEU 445 SER 446 ARG 447 THR 448 ASN 449 THR 450 PRO 451 SER 452 GLY 453 THR 454 THR 455 THR 456 GLN 457 SER 458 ARG 459 LEU 460 GLN 461 PHE 462 SER 463 GLN 464 ALA 465 GLY 466 ALA 467 SER 468 ASP 469 ILE 470 ARG 471 ASP 472 GLN 473 SER 474 ARG 475 ASN 476 TRP 477 LEU 478 PRO 479 GLY 480 PRO 481 CYS 482 TYR 483 ARG 484 GLN 485 GLN 486 ARG 487 VAL 488 SER 489 LYS 490 THR 491 SER 492 ALA 493 ASP 494 ASN 495 ASN 496 ASN 497 SER 498 GLU 499 TYR 500 SER 501 TRP 502 THR 503 GLY 504 ALA 505 THR 506 LYS 507 TYR 508 HIS 509 LEU 510 ASN 511 GLY 512 ARG 513 ASP 514 SER 515 LEU 516 VAL 517 ASN 518 PRO 519 GLY 520 PRO 521 ALA 522 MET 523 ALA 524 SER 525 HIS 526 LYS 527 ASP 528 ASP 529 GLU 530 GLU 531 LYS 532 PHE 533 PHE 534 PRO 535 GLN 536 SER 537 GLY 538 VAL 539 LEU 540 ILE 541 PHE 542 GLY 543 LYS 544 GLN 545 GLY 546 SER 547 GLU 548 LYS 549 THR 550 ASN 551 VAL 552 ASP 553 ILE 554 GLU 555 LYS 556 VAL 557 MET 558 ILE 559 THR 560 ASP 561 GLU 562 GLU 563 GLU 564 ILE 565 ARG 566 THR 567 THR 568 ASN 569 PRO 570 VAL 571 ALA 572 THR 573 GLU 574 GLN 575 TYR 576 GLY 577 SER 578 VAL 579 SER 580 THR 581 ASN 582 LEU 583 GLN 584 ARG 585 GLY 586 ASN 587 ARG 588 GLN 589 ALA 590 ALA 591 THR 592 ALA 593 ASP 594 VAL 595 ASN 596 THR 597 GLN 598 GLY 599 VAL 600 LEU 601 PRO 602 GLY 603 MET 604 VAL 605 TRP 606 GLN 607 ASP 608 ARG 609 ASP 610 VAL 611 TYR 612 LEU 613 GLN 614 GLY 615 PRO 616 ILE 617 TRP 618 ALA 619 LYS 620 ILE 621 PRO 622 HIS 623 THR 624 ASP 625 GLY 626 HIS 627 PHE 628 HIS 629 PRO 630 SER 631 PRO 632 LEU 633 MET 634 GLY 635 GLY 636 PHE 637 GLY 638 LEU 639 LYS 640 HIS 641 PRO 642 PRO 643 PRO 644 GLN 645 ILE 646 LEU 647 ILE 648 LYS 649 ASN 650 THR 651 PRO 652 VAL 653 PRO 654 ALA 655 ASN 656 PRO 657 SER 658 THR 659 THR 660 PHE 661 SER 662 ALA 663 ALA 664 LYS 665 PHE 666 ALA 667 SER 668 PHE 669 ILE 670 THR 671 GLN 672 TYR 673 SER 674 THR 675 GLY 676 GLN 677 VAL 678 SER 679 VAL 680 GLU 681 ILE 682 GLU 683 TRP 684 GLU 685 LEU 686 GLN 687 LYS 688 GLU 689 ASN 690 SER 691 LYS 692 ARG 693 TRP 694 ASN 695 PRO 696 GLU 697 ILE 698 GLN 699 TYR 700 THR 701 SER 702 ASN 703 TYR 704 ASN 705 LYS 706 SER 707 VAL 708 ASN 709 VAL 710 ASP 711 PHE 712 THR 713 VAL 714 ASP 715 THR 716 ASN 717 GLY 718 VAL 719 TYR 720 SER 721 GLU 722 PRO 723 ARG 724 PRO 725 ILE 726 GLY 727 THR 728 ARG 729 TYR 730 LEU 731 THR 732 ARG 733 ASN 734 LEU 735