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Sequence, Chains, Asymmetric and Biological Units

Title ATOMIC MODEL OF RABBIT HEMORRHAGIC DISEASE VIRUS
Keywords ICOSAHEDRAL VIRUS, CALICIVIRUS, LAGOVIRUS, VIRUS
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3J1P     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MAJOR CAPSID PROTEIN VP60  A 525 3901 0
2  Protein   MAJOR CAPSID PROTEIN VP60  B 525 3901 0
3  Protein   MAJOR CAPSID PROTEIN VP60  C 525 3901 0
total       1575 11703 0
Proteins
Unit 1 ASN45 SER46 SER47 ALA48 SER49 VAL50 ALA51 THR52 ALA53 GLY54 ILE55 GLY56 GLY57 PRO58 PRO59 GLN60 GLN61 VAL62 ASP63 GLN64 GLN65 GLU66 THR67 TRP68 ARG69 THR70 ASN71 PHE72 TYR73 TYR74 ASN75 ASP76 VAL77 PHE78 THR79 TRP80 SER81 VAL82 ALA83 ASP84 ALA85 PRO86 GLY87 SER88 ILE89 LEU90 TYR91 THR92 VAL93 GLN94 HIS95 SER96 PRO97 GLN98 ASN99 ASN100 PRO101 PHE102 THR103 ALA104 VAL105 LEU106 SER107 GLN108 MET109 TYR110 ALA111 GLY112 TRP113 ALA114 GLY115 GLY116 MET117 GLN118 PHE119 ARG120 PHE121 ILE122 VAL123 ALA124 GLY125 SER126 GLY127 VAL128 PHE129 GLY130 GLY131 ARG132 LEU133 VAL134 ALA135 ALA136 VAL137 ILE138 PRO139 PRO140 GLY141 ILE142 GLU143 ILE144 GLY145 PRO146 GLY147 LEU148 GLU149 VAL150 ARG151 GLN152 PHE153 PRO154 HIS155 VAL156 VAL157 ILE158 ASP159 ALA160 ARG161 SER162 LEU163 GLU164 PRO165 VAL166 THR167 ILE168 THR169 MET170 PRO171 ASP172 LEU173 ARG174 PRO175 ASN176 MET177 TYR178 HIS179 PRO180 THR181 GLY182 ASP183 PRO184 GLY185 LEU186 VAL187 PRO188 THR189 LEU190 VAL191 LEU192 SER193 VAL194 TYR195 ASN196 ASN197 LEU198 ILE199 ASN200 PRO201 PHE202 GLY203 GLY204 SER205 THR206 ASN207 ALA208 ILE209 GLN210 VAL211 THR212 VAL213 GLU214 THR215 ARG216 PRO217 SER218 ASP219 ASP220 PHE221 GLU222 PHE223 VAL224 MET225 ILE226 ARG227 ALA228 PRO229 SER230 SER231 LYS232 THR233 VAL234 ASP235 SER236 ILE237 SER238 PRO239 ALA240 GLY241 LEU242 ILE243 THR244 THR245 PRO246 VAL247 LEU248 THR249 GLY250 VAL251 GLY252 ASN253 ASP254 ASN255 ARG256 TRP257 ASP258 GLY259 GLN260 ILE261 VAL262 GLY263 LEU264 GLN265 PRO266 VAL267 PRO268 GLY269 GLY270 PHE271 SER272 THR273 CYS274 ASN275 ARG276 HIS277 TRP278 ASN279 LEU280 ASN281 GLY282 SER283 THR284 TYR285 GLY286 TRP287 SER288 SER289 PRO290 ARG291 PHE292 ALA293 ASP294 ILE295 ASP296 HIS297 ARG298 ARG299 GLY300 SER301 ALA302 SER303 TYR304 SER305 GLY306 ASN307 ASN308 SER309 ALA310 ASN311 ALA312 LEU313 GLN314 PHE315 TRP316 TYR317 ALA318 ASN319 ALA320 GLY321 SER322 ALA323 ILE324 ASP325 ASN326 PRO327 ILE328 SER329 GLN330 VAL331 ALA332 PRO333 ASP334 GLY335 PHE336 PRO337 ASP338 MET339 SER340 PHE341 VAL342 PRO343 PHE344 ASN345 SER346 PRO347 ASN348 ILE349 PRO350 THR351 ALA352 GLY353 TRP354 VAL355 GLY356 PHE357 GLY358 GLY359 ILE360 TRP361 ASN362 SER363 ASN364 ASN365 GLY366 ALA367 PRO368 ALA369 ALA370 THR371 THR372 VAL373 GLN374 ALA375 TYR376 GLU377 LEU378 GLY379 PHE380 ALA381 THR382 GLY383 ALA384 PRO385 ASN386 ASN387 LEU388 GLN389 PRO390 THR391 THR392 ASN393 THR394 SER395 GLY396 ALA397 GLN398 THR399 VAL400 ALA401 LYS402 SER403 ILE404 TYR405 ALA406 VAL407 VAL408 THR409 GLY410 THR411 ASN412 GLN413 ASN414 PRO415 THR416 GLY417 LEU418 PHE419 VAL420 MET421 ALA422 SER423 GLY424 VAL425 ILE426 SER427 THR428 PRO429 ASN430 ALA431 SER432 ALA433 VAL434 THR435 TYR436 THR437 PRO438 GLN439 PRO440 ASP441 ARG442 ILE443 VAL444 THR445 THR446 PRO447 GLY448 THR449 PRO450 ALA451 ALA452 ALA453 PRO454 VAL455 GLY456 LYS457 ASN458 THR459 PRO460 ILE461 MET462 PHE463 ALA464 SER465 VAL466 VAL467 ARG468 ARG469 THR470 GLY471 ASP472 VAL473 ASN474 ALA475 ALA476 ALA477 GLY478 SER479 THR480 ASN481 GLY482 THR483 GLN484 TYR485 GLY486 THR487 GLY488 SER489 GLN490 PRO491 LEU492 PRO493 VAL494 THR495 ILE496 GLY497 LEU498 SER499 LEU500 ASN501 ASN502 TYR503 SER504 SER505 ALA506 LEU507 MET508 PRO509 GLY510 GLN511 PHE512 PHE513 VAL514 TRP515 GLN516 LEU517 THR518 PHE519 ALA520 SER521 GLY522 PHE523 MET524 GLU525 ILE526 GLY527 LEU528 SER529 VAL530 ASP531 GLY532 TYR533 PHE534 TYR535 ALA536 GLY537 THR538 GLY539 ALA540 SER541 THR542 THR543 LEU544 ILE545 ASP546 LEU547 THR548 GLU549 LEU550 ILE551 ASP552 VAL553 ARG554 PRO555 VAL556 GLY557 PRO558 ARG559 PRO560 SER561 LYS562 SER563 THR564 LEU565 VAL566 PHE567 ASN568 LEU569
Unit 2 ASN45 SER46 SER47 ALA48 SER49 VAL50 ALA51 THR52 ALA53 GLY54 ILE55 GLY56 GLY57 PRO58 PRO59 GLN60 GLN61 VAL62 ASP63 GLN64 GLN65 GLU66 THR67 TRP68 ARG69 THR70 ASN71 PHE72 TYR73 TYR74 ASN75 ASP76 VAL77 PHE78 THR79 TRP80 SER81 VAL82 ALA83 ASP84 ALA85 PRO86 GLY87 SER88 ILE89 LEU90 TYR91 THR92 VAL93 GLN94 HIS95 SER96 PRO97 GLN98 ASN99 ASN100 PRO101 PHE102 THR103 ALA104 VAL105 LEU106 SER107 GLN108 MET109 TYR110 ALA111 GLY112 TRP113 ALA114 GLY115 GLY116 MET117 GLN118 PHE119 ARG120 PHE121 ILE122 VAL123 ALA124 GLY125 SER126 GLY127 VAL128 PHE129 GLY130 GLY131 ARG132 LEU133 VAL134 ALA135 ALA136 VAL137 ILE138 PRO139 PRO140 GLY141 ILE142 GLU143 ILE144 GLY145 PRO146 GLY147 LEU148 GLU149 VAL150 ARG151 GLN152 PHE153 PRO154 HIS155 VAL156 VAL157 ILE158 ASP159 ALA160 ARG161 SER162 LEU163 GLU164 PRO165 VAL166 THR167 ILE168 THR169 MET170 PRO171 ASP172 LEU173 ARG174 PRO175 ASN176 MET177 TYR178 HIS179 PRO180 THR181 GLY182 ASP183 PRO184 GLY185 LEU186 VAL187 PRO188 THR189 LEU190 VAL191 LEU192 SER193 VAL194 TYR195 ASN196 ASN197 LEU198 ILE199 ASN200 PRO201 PHE202 GLY203 GLY204 SER205 THR206 ASN207 ALA208 ILE209 GLN210 VAL211 THR212 VAL213 GLU214 THR215 ARG216 PRO217 SER218 ASP219 ASP220 PHE221 GLU222 PHE223 VAL224 MET225 ILE226 ARG227 ALA228 PRO229 SER230 SER231 LYS232 THR233 VAL234 ASP235 SER236 ILE237 SER238 PRO239 ALA240 GLY241 LEU242 ILE243 THR244 THR245 PRO246 VAL247 LEU248 THR249 GLY250 VAL251 GLY252 ASN253 ASP254 ASN255 ARG256 TRP257 ASP258 GLY259 GLN260 ILE261 VAL262 GLY263 LEU264 GLN265 PRO266 VAL267 PRO268 GLY269 GLY270 PHE271 SER272 THR273 CYS274 ASN275 ARG276 HIS277 TRP278 ASN279 LEU280 ASN281 GLY282 SER283 THR284 TYR285 GLY286 TRP287 SER288 SER289 PRO290 ARG291 PHE292 ALA293 ASP294 ILE295 ASP296 HIS297 ARG298 ARG299 GLY300 SER301 ALA302 SER303 TYR304 SER305 GLY306 ASN307 ASN308 SER309 ALA310 ASN311 ALA312 LEU313 GLN314 PHE315 TRP316 TYR317 ALA318 ASN319 ALA320 GLY321 SER322 ALA323 ILE324 ASP325 ASN326 PRO327 ILE328 SER329 GLN330 VAL331 ALA332 PRO333 ASP334 GLY335 PHE336 PRO337 ASP338 MET339 SER340 PHE341 VAL342 PRO343 PHE344 ASN345 SER346 PRO347 ASN348 ILE349 PRO350 THR351 ALA352 GLY353 TRP354 VAL355 GLY356 PHE357 GLY358 GLY359 ILE360 TRP361 ASN362 SER363 ASN364 ASN365 GLY366 ALA367 PRO368 ALA369 ALA370 THR371 THR372 VAL373 GLN374 ALA375 TYR376 GLU377 LEU378 GLY379 PHE380 ALA381 THR382 GLY383 ALA384 PRO385 ASN386 ASN387 LEU388 GLN389 PRO390 THR391 THR392 ASN393 THR394 SER395 GLY396 ALA397 GLN398 THR399 VAL400 ALA401 LYS402 SER403 ILE404 TYR405 ALA406 VAL407 VAL408 THR409 GLY410 THR411 ASN412 GLN413 ASN414 PRO415 THR416 GLY417 LEU418 PHE419 VAL420 MET421 ALA422 SER423 GLY424 VAL425 ILE426 SER427 THR428 PRO429 ASN430 ALA431 SER432 ALA433 VAL434 THR435 TYR436 THR437 PRO438 GLN439 PRO440 ASP441 ARG442 ILE443 VAL444 THR445 THR446 PRO447 GLY448 THR449 PRO450 ALA451 ALA452 ALA453 PRO454 VAL455 GLY456 LYS457 ASN458 THR459 PRO460 ILE461 MET462 PHE463 ALA464 SER465 VAL466 VAL467 ARG468 ARG469 THR470 GLY471 ASP472 VAL473 ASN474 ALA475 ALA476 ALA477 GLY478 SER479 THR480 ASN481 GLY482 THR483 GLN484 TYR485 GLY486 THR487 GLY488 SER489 GLN490 PRO491 LEU492 PRO493 VAL494 THR495 ILE496 GLY497 LEU498 SER499 LEU500 ASN501 ASN502 TYR503 SER504 SER505 ALA506 LEU507 MET508 PRO509 GLY510 GLN511 PHE512 PHE513 VAL514 TRP515 GLN516 LEU517 THR518 PHE519 ALA520 SER521 GLY522 PHE523 MET524 GLU525 ILE526 GLY527 LEU528 SER529 VAL530 ASP531 GLY532 TYR533 PHE534 TYR535 ALA536 GLY537 THR538 GLY539 ALA540 SER541 THR542 THR543 LEU544 ILE545 ASP546 LEU547 THR548 GLU549 LEU550 ILE551 ASP552 VAL553 ARG554 PRO555 VAL556 GLY557 PRO558 ARG559 PRO560 SER561 LYS562 SER563 THR564 LEU565 VAL566 PHE567 ASN568 LEU569
Unit 3 ASN45 SER46 SER47 ALA48 SER49 VAL50 ALA51 THR52 ALA53 GLY54 ILE55 GLY56 GLY57 PRO58 PRO59 GLN60 GLN61 VAL62 ASP63 GLN64 GLN65 GLU66 THR67 TRP68 ARG69 THR70 ASN71 PHE72 TYR73 TYR74 ASN75 ASP76 VAL77 PHE78 THR79 TRP80 SER81 VAL82 ALA83 ASP84 ALA85 PRO86 GLY87 SER88 ILE89 LEU90 TYR91 THR92 VAL93 GLN94 HIS95 SER96 PRO97 GLN98 ASN99 ASN100 PRO101 PHE102 THR103 ALA104 VAL105 LEU106 SER107 GLN108 MET109 TYR110 ALA111 GLY112 TRP113 ALA114 GLY115 GLY116 MET117 GLN118 PHE119 ARG120 PHE121 ILE122 VAL123 ALA124 GLY125 SER126 GLY127 VAL128 PHE129 GLY130 GLY131 ARG132 LEU133 VAL134 ALA135 ALA136 VAL137 ILE138 PRO139 PRO140 GLY141 ILE142 GLU143 ILE144 GLY145 PRO146 GLY147 LEU148 GLU149 VAL150 ARG151 GLN152 PHE153 PRO154 HIS155 VAL156 VAL157 ILE158 ASP159 ALA160 ARG161 SER162 LEU163 GLU164 PRO165 VAL166 THR167 ILE168 THR169 MET170 PRO171 ASP172 LEU173 ARG174 PRO175 ASN176 MET177 TYR178 HIS179 PRO180 THR181 GLY182 ASP183 PRO184 GLY185 LEU186 VAL187 PRO188 THR189 LEU190 VAL191 LEU192 SER193 VAL194 TYR195 ASN196 ASN197 LEU198 ILE199 ASN200 PRO201 PHE202 GLY203 GLY204 SER205 THR206 ASN207 ALA208 ILE209 GLN210 VAL211 THR212 VAL213 GLU214 THR215 ARG216 PRO217 SER218 ASP219 ASP220 PHE221 GLU222 PHE223 VAL224 MET225 ILE226 ARG227 ALA228 PRO229 SER230 SER231 LYS232 THR233 VAL234 ASP235 SER236 ILE237 SER238 PRO239 ALA240 GLY241 LEU242 ILE243 THR244 THR245 PRO246 VAL247 LEU248 THR249 GLY250 VAL251 GLY252 ASN253 ASP254 ASN255 ARG256 TRP257 ASP258 GLY259 GLN260 ILE261 VAL262 GLY263 LEU264 GLN265 PRO266 VAL267 PRO268 GLY269 GLY270 PHE271 SER272 THR273 CYS274 ASN275 ARG276 HIS277 TRP278 ASN279 LEU280 ASN281 GLY282 SER283 THR284 TYR285 GLY286 TRP287 SER288 SER289 PRO290 ARG291 PHE292 ALA293 ASP294 ILE295 ASP296 HIS297 ARG298 ARG299 GLY300 SER301 ALA302 SER303 TYR304 SER305 GLY306 ASN307 ASN308 SER309 ALA310 ASN311 ALA312 LEU313 GLN314 PHE315 TRP316 TYR317 ALA318 ASN319 ALA320 GLY321 SER322 ALA323 ILE324 ASP325 ASN326 PRO327 ILE328 SER329 GLN330 VAL331 ALA332 PRO333 ASP334 GLY335 PHE336 PRO337 ASP338 MET339 SER340 PHE341 VAL342 PRO343 PHE344 ASN345 SER346 PRO347 ASN348 ILE349 PRO350 THR351 ALA352 GLY353 TRP354 VAL355 GLY356 PHE357 GLY358 GLY359 ILE360 TRP361 ASN362 SER363 ASN364 ASN365 GLY366 ALA367 PRO368 ALA369 ALA370 THR371 THR372 VAL373 GLN374 ALA375 TYR376 GLU377 LEU378 GLY379 PHE380 ALA381 THR382 GLY383 ALA384 PRO385 ASN386 ASN387 LEU388 GLN389 PRO390 THR391 THR392 ASN393 THR394 SER395 GLY396 ALA397 GLN398 THR399 VAL400 ALA401 LYS402 SER403 ILE404 TYR405 ALA406 VAL407 VAL408 THR409 GLY410 THR411 ASN412 GLN413 ASN414 PRO415 THR416 GLY417 LEU418 PHE419 VAL420 MET421 ALA422 SER423 GLY424 VAL425 ILE426 SER427 THR428 PRO429 ASN430 ALA431 SER432 ALA433 VAL434 THR435 TYR436 THR437 PRO438 GLN439 PRO440 ASP441 ARG442 ILE443 VAL444 THR445 THR446 PRO447 GLY448 THR449 PRO450 ALA451 ALA452 ALA453 PRO454 VAL455 GLY456 LYS457 ASN458 THR459 PRO460 ILE461 MET462 PHE463 ALA464 SER465 VAL466 VAL467 ARG468 ARG469 THR470 GLY471 ASP472 VAL473 ASN474 ALA475 ALA476 ALA477 GLY478 SER479 THR480 ASN481 GLY482 THR483 GLN484 TYR485 GLY486 THR487 GLY488 SER489 GLN490 PRO491 LEU492 PRO493 VAL494 THR495 ILE496 GLY497 LEU498 SER499 LEU500 ASN501 ASN502 TYR503 SER504 SER505 ALA506 LEU507 MET508 PRO509 GLY510 GLN511 PHE512 PHE513 VAL514 TRP515 GLN516 LEU517 THR518 PHE519 ALA520 SER521 GLY522 PHE523 MET524 GLU525 ILE526 GLY527 LEU528 SER529 VAL530 ASP531 GLY532 TYR533 PHE534 TYR535 ALA536 GLY537 THR538 GLY539 ALA540 SER541 THR542 THR543 LEU544 ILE545 ASP546 LEU547 THR548 GLU549 LEU550 ILE551 ASP552 VAL553 ARG554 PRO555 VAL556 GLY557 PRO558 ARG559 PRO560 SER561 LYS562 SER563 THR564 LEU565 VAL566 PHE567 ASN568 LEU569
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany