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Sequence, Chains, Asymmetric and Biological Units

Title CORE OF MAMMALIAN 80S PRE-RIBOSOME IN COMPLEX WITH TRNAS FIT 9A CRYO-EM MAP: CLASSIC PRE STATE 2
Keywords MAMMALIA, TRANSLATION, ELONGATION CYCLE, TRNA, RIBOSOME
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3J0O     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    a 48 1029 0
2  RNA    b 12 260 0
3  RNA    c 17 362 0
4  RNA    d 7 155 0
5  RNA    e 4 84 0
6  RNA    E 5 100 0
7  RNA    f 21 452 0
8  RNA    g 31 660 0
9  RNA    G 13 276 0
10  RNA    h 111 2368 0
11  Protein   RIBOSOMAL PROTEIN S5  T 192 1520 0
12  Protein   RIBOSOMAL PROTEIN S14  K 140 1063 0
13  Protein   RIBOSOMAL PROTEIN S23  L 141 1097 0
14  Protein   RIBOSOMAL PROTEIN S30  X 68 554 0
15  Protein   RIBOSOMAL PROTEIN S15  S 125 985 0
16  RNA    2 112 2392 0
17  RNA    3 12 259 0
18  RNA    4 14 306 0
19  RNA    5 6 127 0
20  RNA    6 19 417 0
21  RNA    7 50 1054 0
22  RNA    8 20 431 0
23  Protein   RIBOSOMAL PROTEIN L10A  B 213 1055 0
24  Protein   RIBOSOMAL PROTEIN L36A  F 95 467 0
25  RNA    Y 75 1597 0
26  RNA    y 3 60 0
27  RNA    V 75 1597 0
28  RNA    v 3 60 0
29  RNA    W 76 1619 0
30  RNA    w 2 44 0
total       1710 22450 0
Proteins
Unit 11 THR9 GLN10 PRO11 LYS12 LEU13 PHE14 GLY15 LYS16 TRP17 ASN18 TYR19 ASP20 GLU21 VAL22 LYS23 ILE24 GLN25 ASP26 PRO27 CYS28 PHE29 GLN30 ASN31 TYR32 ILE33 ALA34 CYS35 THR36 THR37 THR38 LYS39 SER40 GLN41 VAL42 PHE43 VAL44 PRO45 HIS46 THR47 ALA48 GLY49 ARG50 TYR51 GLN52 VAL53 LYS54 LYS55 PHE56 ARG57 LYS58 THR59 GLN60 CYS61 PRO62 ILE63 VAL64 GLU65 ARG66 LEU67 ILE68 GLY69 THR70 LEU71 MET72 PHE73 HIS74 GLY75 ARG76 ASN77 ALA78 GLY79 LYS80 LYS81 ALA82 LEU83 CYS84 ILE85 LYS86 VAL87 VAL88 LYS89 ASN90 ALA91 PHE92 GLU93 ILE94 ILE95 HIS96 LEU97 VAL98 THR99 GLY100 ARG101 ASN102 PRO103 LEU104 GLU105 VAL106 PHE107 VAL108 GLY109 ALA110 VAL111 GLN112 ASN113 ALA114 GLY115 PRO116 ARG117 GLU118 ASP119 SER120 THR121 ARG122 ILE123 GLY124 THR125 ALA126 GLY127 VAL128 VAL129 ARG130 LYS131 GLN132 ALA133 VAL134 ASP135 VAL136 ALA137 PRO138 MET139 ARG140 ARG141 VAL142 ASN143 LEU144 ALA145 ILE146 TYR147 PHE148 ILE149 ILE150 LYS151 GLY152 CYS153 ARG154 GLU155 SER156 ALA157 PHE158 LYS159 SER160 MET161 ARG162 SER163 ILE164 ALA165 GLU166 THR167 LEU168 ALA169 ASP170 GLU171 ILE172 ILE173 ASN174 ALA175 GLU176 LYS177 ASN178 ASN179 THR180 GLN181 SER182 SER183 TRP184 ALA185 ILE186 ARG187 LYS188 LYS189 ASP190 GLU191 ILE192 GLU193 LYS194 VAL195 ALA196 LYS197 GLY198 ASN199 ARG200
Unit 12 GLU12 VAL13 ILE14 SER15 TYR16 GLY17 PRO18 PRO19 ASN20 VAL21 GLY22 ALA23 ASN24 GLU25 ASN26 VAL27 PHE28 GLY29 VAL30 CYS31 HIS32 ILE33 MET34 ALA35 THR36 TRP37 ASN38 ASP39 THR40 PHE41 ILE42 HIS43 VAL44 THR45 ASP46 LEU47 SER48 GLY49 ARG50 GLU51 THR52 LEU53 VAL54 ARG55 VAL56 THR57 GLY58 GLY59 MET60 LYS61 VAL62 LYS63 ALA64 ASP65 ARG66 GLU67 GLU68 SER69 SER70 PRO71 TYR72 ALA73 ALA74 MET75 GLN76 ALA77 ALA78 ILE79 ASP80 VAL81 VAL82 ASN83 ARG84 CYS85 LYS86 GLU87 LEU88 LYS89 ILE90 ASN91 ALA92 LEU93 HIS94 ILE95 LYS96 LEU97 ARG98 ALA99 LYS100 GLY101 GLY102 VAL103 GLU104 THR105 LYS106 GLN107 PRO108 GLY109 PRO110 GLY111 ALA112 GLN113 SER114 ALA115 LEU116 ARG117 ALA118 LEU119 ALA120 ARG121 SER122 GLY123 MET124 LYS125 ILE126 GLY127 ARG128 ILE129 GLU130 ASP131 VAL132 THR133 PRO134 ILE135 PRO136 THR137 ASP138 SER139 THR140 ARG141 ARG142 GLU143 GLY144 GLY145 ARG146 ARG147 GLY148 ARG149 ARG150 LEU151
Unit 13 GLY2 VAL3 GLY4 LYS5 PRO6 ARG7 GLY8 ILE9 ARG10 ALA11 GLY12 ARG13 LYS14 LEU15 ALA16 ARG17 HIS18 ARG19 LYS20 ASP21 GLN22 ARG23 TRP24 ALA25 ASP26 ASN27 ASP28 PHE29 ASN30 LYS31 ARG32 LEU33 LEU34 GLY35 SER36 ARG37 TRP38 ARG39 ASN40 PRO41 PHE42 MET43 GLY44 ALA45 SER46 HIS47 ALA48 LYS49 GLY50 LEU51 VAL52 THR53 GLU54 LYS55 ILE56 GLY57 ILE58 GLU59 SER60 LYS61 GLN62 PRO63 ASN64 SER65 ALA66 VAL67 ARG68 LYS69 CYS70 VAL71 ARG72 VAL73 LEU74 LEU75 ARG76 LYS77 ASN78 SER79 LYS80 LYS81 ILE82 ALA83 ALA84 PHE85 VAL86 PRO87 MET88 ASP89 GLY90 CYS91 LEU92 ASN93 PHE94 LEU95 ALA96 GLU97 ASN98 ASP99 GLU100 VAL101 LEU102 VAL103 ALA104 GLY105 LEU106 GLY107 ARG108 GLN109 GLY110 HIS111 ALA112 VAL113 GLY114 ASP115 ILE116 PRO117 GLY118 VAL119 ARG120 PHE121 LYS122 VAL123 VAL124 CYS125 VAL126 LYS127 GLY128 ILE129 SER130 LEU131 LEU132 ALA133 LEU134 PHE135 LYS136 GLY137 LYS138 LYS139 GLU140 LYS141 ARG142
Unit 14 THR7 LEU8 ALA9 LYS10 ALA11 GLY12 LYS13 VAL14 ARG15 LYS16 GLN17 THR18 PRO19 LYS20 VAL21 GLU22 LYS23 LYS24 ASP25 LYS26 PRO27 ARG28 LYS29 THR30 PRO31 LYS32 GLY33 ARG34 SER35 TYR36 LYS37 ARG38 ILE39 LEU40 TYR41 ASN42 ARG43 ARG44 TYR45 ALA46 PRO47 HIS48 ILE49 LEU50 ALA51 THR52 ASP53 PRO54 LYS55 LYS56 ARG57 LYS58 SER59 PRO60 ASN61 TRP62 HIS63 ALA64 GLY65 LYS66 LYS67 GLU68 LYS69 MET70 ASP71 ALA72 ALA73 ALA74
Unit 15 PHE11 THR12 PHE13 ARG14 GLY15 LYS16 GLY17 LEU18 GLU19 GLU20 LEU21 THR22 ALA23 LEU24 ALA25 SER26 GLY27 SER28 ASN29 SER30 GLU31 LYS32 LEU33 ILE34 SER35 ASP36 GLU37 LEU38 ALA39 ALA40 LEU41 PHE42 ASP43 ALA44 LYS45 THR46 ARG47 ARG48 ARG49 VAL50 LYS51 ARG52 GLY53 ILE54 SER55 GLU56 LYS57 TYR58 ALA59 LYS60 PHE61 VAL62 ASN63 LYS64 VAL65 ARG66 ARG67 SER68 LYS69 GLU70 LYS71 CYS72 PRO73 ALA74 GLY75 GLU76 LYS77 PRO78 VAL79 PRO80 VAL81 LYS82 THR83 HIS84 TYR85 ARG86 SER87 MET88 ILE89 VAL90 ILE91 PRO92 GLU93 LEU94 VAL95 GLY96 GLY97 ILE98 VAL99 GLY100 VAL101 TYR102 ASN103 GLY104 LYS105 GLU106 PHE107 VAL108 ASN109 VAL110 GLU111 VAL112 LYS113 PHE114 ASP115 MET116 ILE117 GLY118 LYS119 TYR120 LEU121 ALA122 GLU123 PHE124 ALA125 MET126 THR127 TYR128 LYS129 PRO130 THR131 THR132 HIS133 GLY134 LYS135
Unit 23 ILE4 THR5 SER6 SER7 GLN8 VAL9 ARG10 GLU11 HIS12 VAL13 LYS14 GLU15 LEU16 LEU17 LYS18 TYR19 SER20 ASN21 GLU22 THR23 LYS24 LYS25 ARG26 ASN27 PHE28 LEU29 GLU30 THR31 VAL32 GLU33 LEU34 GLN35 VAL36 GLY37 LEU38 LYS39 ASN40 TYR41 ASP42 PRO43 GLN44 ARG45 ASP46 LYS47 ARG48 PHE49 SER50 GLY51 SER52 LEU53 LYS54 LEU55 PRO56 ASN57 CYS58 PRO59 ARG60 PRO61 ASN62 MET63 SER64 ILE65 CYS66 ILE67 PHE68 GLY69 ASP70 ALA71 PHE72 ASP73 VAL74 ASP75 ARG76 ALA77 LYS78 SER79 CYS80 GLY81 VAL82 ASP83 ALA84 MET85 SER86 VAL87 ASP88 ASP89 LEU90 LYS91 LYS92 LEU93 ASN94 LYS95 ASN96 LYS97 LYS98 LEU99 ILE100 LYS101 LYS102 LEU103 SER104 LYS105 LYS106 TYR107 ASN108 ALA109 PHE110 ILE111 ALA112 SER113 GLU114 VAL115 LEU116 ILE117 LYS118 GLN119 VAL120 PRO121 ARG122 LEU123 LEU124 GLY125 PRO126 GLN127 LEU128 SER129 LYS130 ALA131 GLY132 LYS133 PHE134 PRO135 THR136 PRO137 VAL138 SER139 HIS140 ASN141 ASP142 ASP143 LEU144 TYR145 GLY146 LYS147 VAL148 THR149 ASP150 VAL151 ARG152 SER153 THR154 ILE155 LYS156 PHE157 GLN158 LEU159 LYS160 LYS161 VAL162 LEU163 CYS164 LEU165 ALA166 VAL167 ALA168 VAL169 GLY170 ASN171 VAL172 GLU173 MET174 GLU175 GLU176 ASP177 VAL178 LEU179 VAL180 ASN181 GLN182 ILE183 LEU184 MET185 SER186 VAL187 ASN188 PHE189 PHE190 VAL191 SER192 LEU193 LEU194 LYS195 LYS196 ASN197 TRP198 GLN199 ASN200 VAL201 GLY202 SER203 LEU204 VAL205 VAL206 LYS207 SER208 SER209 MET210 GLY211 PRO212 ALA213 PHE214 ARG215 LEU216
Unit 24 VAL2 ASN3 VAL4 PRO5 LYS6 THR7 ARG8 LYS9 THR10 TYR11 CYS12 LYS13 GLY14 LYS15 THR16 CYS17 ARG18 LYS19 HIS20 THR21 GLN22 HIS23 LYS24 VAL25 THR26 GLN27 TYR28 LYS29 ALA30 GLY31 LYS32 ALA33 SER34 LEU35 PHE36 ALA37 GLN38 GLY39 LYS40 ARG41 ARG42 TYR43 ASP44 ARG45 LYS46 GLN47 SER48 GLY49 PHE50 GLY51 GLY52 GLN53 THR54 LYS55 PRO56 VAL57 PHE58 HIS59 LYS60 LYS61 ALA62 LYS63 THR64 THR65 LYS66 LYS67 VAL68 VAL69 LEU70 ARG71 LEU72 GLU73 CYS74 VAL75 LYS76 CYS77 LYS78 THR79 ARG80 ALA81 GLN82 LEU83 THR84 LEU85 LYS86 ARG87 CYS88 LYS89 HIS90 PHE91 GLU92 LEU93 GLY94 GLY95 GLU96
Nucleic acids
Unit 1 G541 G542 A543 G544 G545 G546 C547 A548 A549 G550 U551 C552 A553 U554 G555 G556 U557 G558 C559 C560 A561 G562 C563 A564 G565 C566 C567 G568 C569 G570 G571 U572 A573 A574 U575 U576 C577 C578 A579 G580 C581 U582 C583 C584 A585 A586 U587 A588
Unit 2 G877 A878 G879 G880 U881 G882 A883 A884 A885 U886 U887 C888
Unit 3 G972 A973 C974 G975 A976 U977 C978 A979 G980 A981 U982 A983 C984 C985 G986 U987 C988
Unit 4 C1543 G1544 A1545 G1546 G1547 A1548 A1549
Unit 5 A1132 C1133 C1134 A1135
Unit 6 U1589 C1590 C1591 C1592 U1593
Unit 7 G1236 G1237 U1238 G1239 G1240 U1241 G1242 G1243 U1244 G1245 C1246 G1249 G1250 C1251 C1252 G1253 U1254 U1255 C1256 A3247 U3248
Unit 8 G1142 A1143 A1144 C1145 C1146 U1147 G1148 C1149 G1150 G1151 C1152 U1153 U1154 A1155 A1156 U1157 U1158 U1159 G1160 A1161 C1162 U1163 C1164 A1165 A1166 C1167 A1168 C1169 G1170 G1171 G1172
Unit 9 G1429 C1430 A1431 C1432 G1433 C1434 G1435 C1436 G1437 U1438 U1439 A1440 C1441
Unit 10 C1606 A1607 C1608 C1609 G1610 C1611 C1612 C1613 G1614 U1615 C1616 G1617 C1618 U1619 U1620 G1621 U1622 A1623 G1624 U1625 A1626 A1627 C1628 G1629 A1630 A1631 U1632 G1633 G1634 U1635 C1636 U1637 G1638 G1639 U1640 G1641 A1642 A1643 C1644 C1645 U1646 U1647 C1648 U1649 G1650 G1651 A1652 C1653 U1654 G1655 C1656 G1657 A1658 C1659 A1660 G1661 C1662 A1663 A1664 U1665 G1666 U1667 U1668 G1669 C1670 G1671 G1672 A1673 A1674 A1675 A1676 A1677 U1678 A1679 A1680 G1681 U1682 A1683 A1684 A1685 C1686 C1687 C1688 U1689 A1690 C1691 C1692 A1693 U1694 U1695 U1696 G1697 G1698 A1699 A1700 C1701 A1702 A1703 C1704 A1705 A1706 G1707 A1708 A1709 G1710 U1711 C1712 G1713 U1714 A1715 A1716
Unit 16 G2194 C2195 C2196 C2197 A2198 G2199 U2200 G2201 C2202 U2203 C2204 U2205 G2206 A2207 A2208 U2209 G2210 U2211 C2212 A2213 A2214 A2215 G2216 U2217 G2218 A2219 A2220 G2221 A2222 A2223 A2224 U2225 U2226 C2227 A2228 A2229 C2230 C2231 A2232 A2233 G2234 C2235 G2236 C2237 G2238 G2239 G2240 U2241 A2242 A2243 A2244 C2245 G2246 G2247 C2248 G2249 G2250 G2251 A2252 G2253 U2254 A2255 A2256 C2257 U2258 A2259 U2260 G2261 A2262 C2263 U2264 C2265 U2266 C2267 U2268 U2269 A2270 A2271 G2272 G2273 U2274 A2275 G2276 C2277 C2278 A2279 A2280 A2281 U2282 G2283 C2284 C2285 U2286 C2287 G2288 U2289 C2290 A2291 U2292 C2293 U2294 A2295 A2296 U2297 U2298 A2299 G2300 U2301 G2302 A2303 C2304 G2305
Unit 17 G2477 C2478 C2479 A2480 G2481 U2482 G2483 A2484 A2485 A2486 U2487 A2488
Unit 18 G2614 G2615 C2616 U2617 G2618 G2619 G2620 G2621 C2622 G2623 G2624 C2625 A2626 C2627
Unit 19 C2653 C2654 U2655 A2656 A2657 G2658
Unit 20 A2689 G2690 A2691 A2692 C2693 A2694 A2695 A2696 A2697 G2698 G2699 G2700 U2701 A2702 A2703 A2704 A2705 G2706 C2707
Unit 21 G2824 C2825 U2826 U2827 G2828 U2829 G2830 G2831 C2832 A2833 G2834 U2835 C2836 A2837 A2838 G2839 C2840 G2841 U2842 U2843 C2844 A2845 U2846 A2847 G2848 C2849 G2850 A2851 C2852 A2853 U2854 U2855 G2856 C2857 U2858 U2859 U2860 U2861 U2862 G2863 A2864 U2865 U2866 C2867 U2868 U2869 C2870 G2871 A2872 U2873
Unit 22 G2957 A2958 C2959 C2960 G2961 U2962 C2963 G2964 U2965 G2966 A2967 G2968 A2969 C2970 A2971 G2972 G2973 U2974 U2975 A2976
Unit 25 G1 C2 C3 C4 G5 G6 A7 U8 A9 G10 C11 U12 C13 A14 G15 U16 C17 G18 G19 U20 A21 G22 A23 G24 C25 A26 G27 G28 G29 G30 A31 U32 U33 G34 A35 A36 A37 A38 U39 C40 C41 C42 C43 G44 U45 G46 U47 C48 C49 U50 U51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 A64 G65 U66 C67 C68 G69 G70 G71 C72 A73 C74 C75
Unit 26 U19 U20 C21
Unit 27 G1 C2 C3 C4 G5 G6 A7 U8 A9 G10 C11 U12 C13 A14 G15 U16 C17 G18 G19 U20 A21 G22 A23 G24 C25 A26 G27 G28 G29 G30 A31 U32 U33 G34 A35 A36 A37 A38 U39 C40 C41 C42 C43 G44 U45 G46 U47 C48 C49 U50 U51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 A64 G65 U66 C67 C68 G69 G70 G71 C72 A73 C74 C75
Unit 28 U16 U17 C18
Unit 29 G1 C2 C3 C4 G5 G6 A7 U8 A9 G10 C11 U12 C13 A14 G15 U16 C17 G18 G19 U20 A21 G22 A23 G24 C25 A26 G27 G28 G29 G30 A31 U32 U33 G34 A35 A36 A37 A38 U39 C40 C41 C42 C43 G44 U45 G46 U47 C48 C49 U50 U51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 A64 G65 U66 C67 C68 G69 G70 G71 C72 A73 C74 C75 A76
Unit 30 A14 A15
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany