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Sequence, Chains, Asymmetric and Biological Units

Title MODELS FOR RIBOSOME COMPONENTS THAT ARE NEAREST NEIGHBORS TO BOVINE MITOCHONDRIAL INITIATION FACTOR2 BOUND TO THE E. COL
Keywords 70S, RNA, RIBOSOMAL PROTEIN
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 59 1262 0
2  RNA    D 60 1289 0
3  RNA    E 100 2148 0
4  Protein   PROTEIN S12 (SMALL SUBUNIT)  F 124 970 0
5  RNA    B 118 2519 0
6  Protein   PROTEIN L14 (LARGE SUBUNIT)  G 121 930 0
total       582 9118 0

Proteins
Unit 4 PRO1 THR2 ILE3 ASN4 GLN5 LEU6 VAL7 ARG8 LYS9 GLY10 ARG11 GLU12 LYS13 VAL14 ARG15 LYS16 LYS17 SER18 LYS19 VAL20 PRO21 ALA22 LEU23 LYS24 GLY25 ALA26 PRO27 PHE28 ARG29 ARG30 GLY31 VAL32 CYS33 THR34 VAL35 VAL36 ARG37 THR38 VAL39 THR40 PRO41 LYS42 LYS43 PRO44 ASN45 SER46 ALA47 LEU48 ARG49 LYS50 VAL51 ALA52 LYS53 VAL54 ARG55 LEU56 THR57 SER58 GLY59 TYR60 GLU61 VAL62 THR63 ALA64 TYR65 ILE66 PRO67 GLY68 GLU69 GLY70 HIS71 ASN72 LEU73 GLN74 GLU75 HIS76 SER77 VAL78 VAL79 LEU80 ILE81 ARG82 GLY83 GLY84 ARG85 VAL86 LYS87 ASP88 LEU89 PRO90 GLY91 VAL92 ARG93 TYR94 HIS95 ILE96 VAL97 ARG98 GLY99 VAL100 TYR101 ASP102 ALA103 ALA104 GLY105 VAL106 LYS107 ASP108 ARG109 LYS110 LYS111 SER112 ARG113 SER114 LYS115 TYR116 GLY117 THR118 LYS119 LYS120 PRO121 LYS122 GLU123 ALA124
Unit 6 ILE2 GLN3 GLU4 GLN5 THR6 MET7 LEU8 ASN9 VAL10 ALA11 ASP12 ASN13 SER14 GLY15 ALA16 ARG17 ARG18 VAL19 MET20 CYS21 ILE22 LYS23 VAL24 LEU25 GLY26 GLY27 SER28 HIS29 ARG30 ARG31 TYR32 ALA33 GLY34 VAL35 GLY36 ASP37 ILE38 ILE39 LYS40 ILE41 THR42 ILE43 LYS44 GLU45 ALA46 ILE47 PRO48 ARG49 GLY50 LYS51 VAL52 LYS53 LYS54 GLY55 ASP56 VAL57 LEU58 LYS59 ALA60 VAL61 VAL62 VAL63 ARG64 THR65 LYS66 LYS67 GLY68 VAL69 ARG70 ARG71 PRO72 ASP73 GLY74 SER75 VAL76 ILE77 ARG78 PHE79 ASP80 GLY81 ASN82 ALA83 CYS84 VAL85 LEU86 LEU87 ASN88 ASN89 ASN90 SER91 GLU92 GLN93 PRO94 ILE95 GLY96 THR97 ARG98 ILE99 PHE100 GLY101 PRO102 VAL103 THR104 ARG105 GLU106 LEU107 ARG108 SER109 GLU110 LYS111 PHE112 MET113 LYS114 ILE115 ILE116 SER117 LEU118 ALA119 PRO120 GLU121 VAL122

Nucleic acids
Unit 1 C47 C48 U49 A50 A51 C52 A53 C54 A55 U56 G57 C58 C339 U340 C341 C342 U343 A344 C345 G346 G347 G348 A349 G350 G354 C355 A356 G357 U358 G359 G360 G361 U367 U368 G369 C370 A371 C372 A373 A374 U375 G376 G377 G378 C379 G380 C381 A382 A383 G384 C385 C386 U387 G388 A389 U390 G391 C392 A393
Unit 2 G1 U2 G3 C4 C5 A6 G7 C8 A9 G10 C11 C12 G13 C14 G15 G16 U17 A18 A19 U20 A21 C22 G23 G24 A25 G26 G27 G28 C29 G30 C31 G32 A33 G34 C35 G36 U37 U38 A39 C40 C41 C42 G43 G44 A45 U46 U47 C48 A49 C50 U51 G52 G53 G54 C55 G56 U57 A58 A59 A60
Unit 3 C1 A2 C3 C4 G5 C6 C7 C8 G9 U10 C11 A12 C13 G14 C15 C16 A17 U18 G19 G20 G21 A22 G23 C24 G25 G26 G27 C28 U29 C30 U31 A32 C33 C34 C35 G36 A37 A38 G39 U40 C41 G42 C43 C44 G45 G46 G47 A48 G49 C50 C51 U52 A53 C54 G55 G56 G57 C58 A59 G60 G61 C62 G63 C64 C65 G66 A67 G68 G69 G70 U71 A72 G73 G74 G75 C76 C77 C78 G79 U80 G81 A82 C83 U84 G85 G86 G87 G88 C89 G90 A91 A92 G93 U94 C95 G96 U97 A98 A99 C100
Unit 5 G1906 G1907 C1908 C1909 G1910 U1911 A1912 A1913 C1914 U1915 A1916 U1917 A1918 A1919 C1920 G1921 G1922 U1923 C1924 U1946 C1947 G1948 G1949 G1950 U1951 A1952 A1953 G1954 U1955 U1956 C1957 C1958 G1959 A1960 C2456 U2457 G2458 A2459 U2460 A2461 C2462 C2463 G2464 C2465 C2466 C2467 A2468 A2469 G2470 A2471 G2472 U2473 U2474 C2475 A2476 U2477 A2478 U2479 C2480 G2481 A2482 C2483 G2484 G2485 C2486 G2487 G2488 U2489 G2490 U2491 U2492 U2493 G2494 G2495 A2547 U2548 G2549 G2550 C2551 U2552 G2553 U2554 U2555 C2556 G2557 C2558 C2559 A2560 U2561 C2646 U2647 G2648 C2649 U2650 C2651 C2652 U2653 A2654 G2655 U2656 A2657 C2658 G2659 A2660 G2661 A2662 G2663 G2664 A2665 C2666 C2667 G2668 G2669 A2670 G2671 U2672 G2673 G2674

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany