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Sequence, Chains, Asymmetric and Biological Units

Title MODIFIED E. COLI TMRNA IN THE RESUME STATE WITH THE TRNA-LIK IN THE RIBOSOMAL P SITE INTERACTING WITH THE SMPB
Keywords TRANSFER-MESSENGER RNA, TRANS-TRANSLATION, RNA, MOLECULAR MI PSEUDO-KNOTS, TRNA-LIKE DOMAIN, MRNA-LIKE DOMAIN, MS2, RNA PROTEIN-RNA COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3IZ4     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 377 8053 0
2  Protein   SSRA-BINDING PROTEIN  B 118 965 0
total       495 9018 0

Proteins
Unit 2 ALA2 PRO3 VAL4 LEU5 GLU6 ASN7 ARG8 ARG9 ALA10 ARG11 HIS12 ASP13 TYR14 GLU15 ILE16 LEU17 GLU18 THR19 TYR20 GLU21 ALA22 GLY23 ILE24 ALA25 LEU26 LYS27 GLY28 THR29 GLU30 VAL31 LYS32 SER33 LEU34 ARG35 ALA36 GLY37 LYS38 VAL39 ASP40 PHE41 THR42 GLY43 SER44 PHE45 ALA46 ARG47 PHE48 GLU49 ASP50 GLY51 GLU52 LEU53 TYR54 LEU55 GLU56 ASN57 LEU58 TYR59 ILE60 ALA61 PRO62 TYR63 TYR68 ALA69 ASN70 VAL71 ASP72 PRO73 ARG74 ARG75 LYS76 ARG77 LYS78 LEU79 LEU80 LEU81 HIS82 LYS83 HIS84 GLU85 LEU86 ARG87 ARG88 LEU89 LEU90 GLY91 LYS92 VAL93 GLU94 GLN95 LYS96 GLY97 LEU98 THR99 LEU100 VAL101 PRO102 LEU103 LYS104 ILE105 TYR106 PHE107 ASN108 GLU109 ARG110 GLY111 TYR112 ALA113 LYS114 VAL115 LEU116 LEU117 GLY118 LEU119 ALA120 ARG121 GLY122 LYS123

Nucleic acids
Unit 1 G1 G2 G3 G4 C5 U6 G7 A8 U9 U10 C11 U12 G13 G14 A15 U16 U17 C18 G19 A20 C21 G22 G23 G24 A25 U26 U27 U28 G29 C30 G31 A32 A33 A34 C35 C36 C37 A38 A39 G40 G41 U42 G43 C44 A45 U46 G47 C48 C49 G50 A51 G52 G53 G54 G55 C56 G57 G58 U59 U60 G61 G62 C63 C64 U65 C66 G67 U68 A69 A70 A71 A72 A73 G74 C75 C76 G77 C78 A79 A80 A81 A82 A83 A84 U85 A86 G87 U88 C89 G90 C91 A92 A93 A94 C95 G96 A97 C98 G99 A100 A101 A102 A103 C104 U105 A106 C107 C108 A109 U110 C111 A112 U113 C114 A115 U116 C117 A118 U119 C120 A121 C122 A123 U124 G125 A126 G127 G128 A129 U130 C131 A132 C133 C134 C135 A136 U137 G138 U139 A140 A141 C142 G143 A144 U145 G146 A147 U148 G149 A150 U151 G152 C153 C154 U155 C156 U157 C158 U159 C160 C161 C162 U163 A164 G165 C166 C167 U168 C169 C170 G171 C172 U173 C174 U175 U176 A177 G178 G179 A180 C181 G182 G183 G184 G185 A186 U187 C188 A189 A190 G191 A192 G193 A194 G195 G196 U197 C198 A199 A200 A201 C202 C203 C204 A205 A206 A207 A208 G209 A210 G211 A212 U213 C214 G215 C216 G217 U218 G219 G220 A221 A222 G223 C224 C225 C226 U227 G228 C229 C230 U231 G232 G233 G234 G235 U236 U237 G238 A239 A240 G241 C242 G243 U244 U245 A246 A247 A248 A249 C250 U251 U252 A253 A254 U255 C256 A257 G258 G259 C260 U261 A262 G263 U264 U265 U266 G267 U268 U269 A270 G271 U272 G273 G274 C275 G276 U277 G278 U279 C280 C281 G282 U283 C284 C285 G286 C287 A288 G289 C290 U291 G292 G293 C294 A295 A296 G297 C298 G299 A300 A301 U302 G303 U304 A305 A306 A307 G308 A309 C310 U311 G312 A313 C314 U315 A316 A317 G318 C319 A320 U321 G322 U323 A324 G325 U326 A327 C328 C329 G330 A331 G332 G333 A334 C335 G336 U337 A338 G339 G340 A341 A342 U343 U344 U345 C346 G347 G348 A349 C350 G351 C352 G353 G354 G355 U356 U357 C358 A359 A360 C361 U362 C363 C364 C365 G366 C367 C368 A369 G370 C371 U372 C373 C374 A375 C376 C377

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany