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Sequence, Chains, Asymmetric and Biological Units

Title TMRNA-SMPB: A JOURNEY TO THE CENTER OF THE BACTERIAL RIBOSOM
Keywords TMRNA, SMPB, RIBOSOME, TRANS-TRANSLATION, RIBOSOMAL PROTEIN- COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3IYQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 349 7466 0
2  Protein   SSRA-BINDING PROTEIN  B 122 992 0
total       471 8458 0

Proteins
Unit 2 ALA2 PRO3 VAL4 LEU5 GLU6 ASN7 ARG8 ARG9 ALA10 ARG11 HIS12 ASP13 TYR14 GLU15 ILE16 LEU17 GLU18 THR19 TYR20 GLU21 ALA22 GLY23 ILE24 ALA25 LEU26 LYS27 GLY28 THR29 GLU30 VAL31 LYS32 SER33 LEU34 ARG35 ALA36 GLY37 LYS38 VAL39 ASP40 PHE41 THR42 GLY43 SER44 PHE45 ALA46 ARG47 PHE48 GLU49 ASP50 GLY51 GLU52 LEU53 TYR54 LEU55 GLU56 ASN57 LEU58 TYR59 ILE60 ALA61 PRO62 TYR63 GLU64 LYS65 GLY66 SER67 TYR68 ALA69 ASN70 VAL71 ASP72 PRO73 ARG74 ARG75 LYS76 ARG77 LYS78 LEU79 LEU80 LEU81 HIS82 LYS83 HIS84 GLU85 LEU86 ARG87 ARG88 LEU89 LEU90 GLY91 LYS92 VAL93 GLU94 GLN95 LYS96 GLY97 LEU98 THR99 LEU100 VAL101 PRO102 LEU103 LYS104 ILE105 TYR106 PHE107 ASN108 GLU109 ARG110 GLY111 TYR112 ALA113 LYS114 VAL115 LEU116 LEU117 GLY118 LEU119 ALA120 ARG121 GLY122 LYS123

Nucleic acids
Unit 1 G1 G2 G3 G4 G5 U6 G7 A8 A9 A10 C11 G12 G13 U14 C15 U16 C17 G18 A19 C20 G21 G22 G23 G24 G25 U26 C27 G28 C29 C30 G31 A32 G33 G34 G35 C36 G37 U38 G39 G40 C41 U42 G43 C44 G45 C46 G47 C48 C49 G50 A51 G52 G53 U54 G55 C56 G57 G58 G59 U60 G61 G62 C63 C64 U65 C66 G67 U68 A69 A70 A71 A72 A73 C74 C75 C76 G77 C78 A79 A80 C81 G82 G83 C84 A85 U86 A87 A88 C89 U90 G91 C92 C93 A94 A95 C96 A97 C98 C99 A100 A101 C102 U103 A104 C105 G106 C107 U108 C109 U110 C111 G112 C113 G114 G115 C116 U117 U118 A119 A120 U121 G122 A123 C124 C125 G126 C127 G128 A129 C130 C131 U132 C133 G134 C135 C136 C137 G138 G139 U140 A141 G142 C143 C144 C145 U146 G147 C148 C149 G150 G151 G152 G153 G154 C155 U156 C157 A158 C159 C160 G161 G162 A163 A164 G165 C166 G167 G168 G169 G170 A171 C172 A173 C174 A175 A176 A177 C178 C179 C180 G181 G182 C183 U184 A185 G186 C187 C188 C189 G190 G191 G192 G193 C194 C195 A196 C197 G198 C199 C200 C201 U202 C203 U204 A205 A206 C207 C208 C209 C210 G211 G212 G213 C214 G215 A216 A217 G218 C219 U220 U221 G222 A223 A224 G225 G226 G227 G228 G229 C230 U231 C232 G233 C234 U235 C236 C237 U238 G239 G240 C241 C242 G243 C244 C245 C246 G247 U248 C249 C250 G251 C252 G253 G254 G255 C256 C257 A258 A259 G260 C261 C262 A263 G264 G265 A266 G267 G268 A269 C270 A271 C272 G273 C274 G275 A276 A277 A278 C279 G280 C281 G282 G283 A284 C285 U286 A287 C288 G289 C290 G291 C292 G293 U294 A295 G296 A297 G298 G299 C300 C301 C302 G303 C304 C305 G306 U307 A308 G309 G310 G311 A312 C313 C314 U315 U316 C317 G318 G319 A320 C321 G322 G323 G324 G325 G326 U327 U328 C329 G330 A331 C332 U333 C334 C335 C336 C337 C338 C339 A340 C341 C342 U343 C344 C345 A346 C347 C348 A349

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany