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Sequence, Chains, Asymmetric and Biological Units

Title RING1B C-TERMINAL DOMAIN/RYBP C-TERMINAL DOMAIN COMPLEX
Keywords RING1B, RYBP, POLYCOMB, E3-LIGASE, CHROMOSOMAL PROTEIN, TRAN REGULATION, CHROMATIN REGULATOR, TRANSCRIPTION REPRESSOR, L METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, REPRESSOR, TRANSCRI UBL CONJUGATION PATHWAY, ZINC-FINGER, APOPTOSIS, DNA-BINDIN PROTEIN BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3IXS     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   E3 UBIQUITIN-PROTEIN LIGASE RING2  A 111 887 0
2  Protein   RING1 AND YY1-BINDING PROTEIN  B 31 241 0
3  Protein   E3 UBIQUITIN-PROTEIN LIGASE RING2  C 111 887 0
4  Protein   RING1 AND YY1-BINDING PROTEIN  D 34 263 0
5  Protein   E3 UBIQUITIN-PROTEIN LIGASE RING2  E 101 810 0
6  Protein   RING1 AND YY1-BINDING PROTEIN  F 32 252 0
7  Protein   E3 UBIQUITIN-PROTEIN LIGASE RING2  G 99 795 0
8  Protein   RING1 AND YY1-BINDING PROTEIN  H 36 283 0
9  Protein   E3 UBIQUITIN-PROTEIN LIGASE RING2  I 95 766 0
10  Protein   RING1 AND YY1-BINDING PROTEIN  J 30 234 0
11  Protein   E3 UBIQUITIN-PROTEIN LIGASE RING2  K 100 803 0
12  Protein   RING1 AND YY1-BINDING PROTEIN  L 32 252 0
13  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RING2  A 1 0 4
14  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RING2  C 2 0 17
15  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RING2  E 1 0 4
16  Ligand   RING1 AND YY1-BINDING PROTEIN  H 1 0 4
17 Water     421 0 421
total       1238 6473 450
Proteins
Unit 1 ALA223 SER224 GLU225 ILE226 GLU227 LEU228 VAL229 PHE230 ARG231 PRO232 HIS233 PRO234 THR235 LEU236 MET237 GLU238 LYS239 ASP240 ASP241 SER242 ALA243 GLN244 THR245 ARG246 TYR247 ILE248 LYS249 THR250 SER251 GLY252 ASN253 ALA254 THR255 VAL256 ASP257 HIS258 LEU259 SER260 LYS261 TYR262 LEU263 ALA264 VAL265 ARG266 LEU267 ALA268 LEU269 GLU270 GLU271 LEU272 ARG273 SER274 LYS275 GLY276 GLU277 SER278 ASN279 GLN280 MET281 ASN282 LEU283 ASP284 THR285 ALA286 SER287 GLU288 LYS289 GLN290 TYR291 THR292 ILE293 TYR294 ILE295 ALA296 THR297 ALA298 SER299 GLY300 GLN301 PHE302 THR303 VAL304 LEU305 ASP306 GLY307 SER308 PHE309 SER310 LEU311 GLU312 LEU313 VAL314 SER315 GLU316 LYS317 TYR318 TRP319 LYS320 VAL321 ASN322 LYS323 PRO324 MET325 GLU326 LEU327 TYR328 TYR329 ALA330 PRO331 THR332 LYS333
Unit 2 PRO146 ARG147 LEU148 LYS149 ASN150 VAL151 ASP152 ARG153 SER154 THR155 ALA156 GLN157 GLN158 LEU159 ALA160 VAL161 THR162 VAL163 GLY164 ASN165 VAL166 THR167 VAL168 ILE169 ILE170 THR171 ASP172 PHE173 LYS174 GLU175 LYS176
Unit 3 ALA223 SER224 GLU225 ILE226 GLU227 LEU228 VAL229 PHE230 ARG231 PRO232 HIS233 PRO234 THR235 LEU236 MET237 GLU238 LYS239 ASP240 ASP241 SER242 ALA243 GLN244 THR245 ARG246 TYR247 ILE248 LYS249 THR250 SER251 GLY252 ASN253 ALA254 THR255 VAL256 ASP257 HIS258 LEU259 SER260 LYS261 TYR262 LEU263 ALA264 VAL265 ARG266 LEU267 ALA268 LEU269 GLU270 GLU271 LEU272 ARG273 SER274 LYS275 GLY276 GLU277 SER278 ASN279 GLN280 MET281 ASN282 LEU283 ASP284 THR285 ALA286 SER287 GLU288 LYS289 GLN290 TYR291 THR292 ILE293 TYR294 ILE295 ALA296 THR297 ALA298 SER299 GLY300 GLN301 PHE302 THR303 VAL304 LEU305 ASP306 GLY307 SER308 PHE309 SER310 LEU311 GLU312 LEU313 VAL314 SER315 GLU316 LYS317 TYR318 TRP319 LYS320 VAL321 ASN322 LYS323 PRO324 MET325 GLU326 LEU327 TYR328 TYR329 ALA330 PRO331 THR332 LYS333
Unit 4 GLY143 THR144 ARG145 PRO146 ARG147 LEU148 LYS149 ASN150 VAL151 ASP152 ARG153 SER154 THR155 ALA156 GLN157 GLN158 LEU159 ALA160 VAL161 THR162 VAL163 GLY164 ASN165 VAL166 THR167 VAL168 ILE169 ILE170 THR171 ASP172 PHE173 LYS174 GLU175 LYS176
Unit 5 ALA223 SER224 GLU225 ILE226 GLU227 LEU228 VAL229 PHE230 ARG231 PRO232 HIS233 PRO234 THR235 LEU236 MET237 GLU238 LYS239 ASP240 ASP241 SER242 ALA243 GLN244 THR245 ARG246 TYR247 ILE248 LYS249 THR250 SER251 GLY252 ASN253 ALA254 THR255 VAL256 ASP257 HIS258 LEU259 SER260 LYS261 TYR262 LEU263 ALA264 VAL265 ARG266 LEU267 ALA268 LEU269 GLU270 GLU271 LEU272 ARG273 LEU283 ASP284 THR285 ALA286 SER287 GLU288 LYS289 GLN290 TYR291 THR292 ILE293 TYR294 ILE295 ALA296 THR297 ALA298 SER299 GLY300 GLN301 PHE302 THR303 VAL304 LEU305 ASP306 GLY307 SER308 PHE309 SER310 LEU311 GLU312 LEU313 VAL314 SER315 GLU316 LYS317 TYR318 TRP319 LYS320 VAL321 ASN322 LYS323 PRO324 MET325 GLU326 LEU327 TYR328 TYR329 ALA330 PRO331 THR332
Unit 6 ARG145 PRO146 ARG147 LEU148 LYS149 ASN150 VAL151 ASP152 ARG153 SER154 THR155 ALA156 GLN157 GLN158 LEU159 ALA160 VAL161 THR162 VAL163 GLY164 ASN165 VAL166 THR167 VAL168 ILE169 ILE170 THR171 ASP172 PHE173 LYS174 GLU175 LYS176
Unit 7 SER224 GLU225 ILE226 GLU227 LEU228 VAL229 PHE230 ARG231 PRO232 HIS233 PRO234 THR235 LEU236 MET237 SER242 ALA243 GLN244 THR245 ARG246 TYR247 ILE248 LYS249 THR250 SER251 GLY252 ASN253 ALA254 THR255 VAL256 ASP257 HIS258 LEU259 SER260 LYS261 TYR262 LEU263 ALA264 VAL265 ARG266 LEU267 ALA268 LEU269 GLU270 GLU271 LEU272 ARG273 SER274 ASN282 LEU283 ASP284 THR285 ALA286 SER287 GLU288 LYS289 GLN290 TYR291 THR292 ILE293 TYR294 ILE295 ALA296 THR297 ALA298 SER299 GLY300 GLN301 PHE302 THR303 VAL304 LEU305 ASP306 GLY307 SER308 PHE309 SER310 LEU311 GLU312 LEU313 VAL314 SER315 GLU316 LYS317 TYR318 TRP319 LYS320 VAL321 ASN322 LYS323 PRO324 MET325 GLU326 LEU327 TYR328 TYR329 ALA330 PRO331 THR332 LYS333
Unit 8 THR144 ARG145 PRO146 ARG147 LEU148 LYS149 ASN150 VAL151 ASP152 ARG153 SER154 THR155 ALA156 GLN157 GLN158 LEU159 ALA160 VAL161 THR162 VAL163 GLY164 ASN165 VAL166 THR167 VAL168 ILE169 ILE170 THR171 ASP172 PHE173 LYS174 GLU175 LYS176 THR177 ARG178 SER179
Unit 9 SER224 GLU225 ILE226 GLU227 LEU228 VAL229 PHE230 ARG231 PRO232 HIS233 PRO234 THR235 LEU236 MET237 GLU238 ALA243 GLN244 THR245 ARG246 TYR247 ILE248 LYS249 THR250 SER251 GLY252 ASN253 ALA254 THR255 VAL256 ASP257 HIS258 LEU259 SER260 LYS261 TYR262 LEU263 ALA264 VAL265 ARG266 LEU267 ALA268 LEU269 GLU270 GLU271 LEU272 ARG273 ASP284 THR285 ALA286 SER287 GLU288 LYS289 GLN290 TYR291 THR292 ILE293 TYR294 ILE295 ALA296 THR297 ALA298 SER299 GLY300 GLN301 PHE302 THR303 VAL304 LEU305 ASP306 GLY307 SER308 PHE309 SER310 LEU311 GLU312 LEU313 VAL314 SER315 GLU316 LYS317 TYR318 TRP319 LYS320 VAL321 ASN322 LYS323 PRO324 MET325 GLU326 LEU327 TYR328 TYR329 ALA330 PRO331 THR332
Unit 10 ARG147 LEU148 LYS149 ASN150 VAL151 ASP152 ARG153 SER154 THR155 ALA156 GLN157 GLN158 LEU159 ALA160 VAL161 THR162 VAL163 GLY164 ASN165 VAL166 THR167 VAL168 ILE169 ILE170 THR171 ASP172 PHE173 LYS174 GLU175 LYS176
Unit 11 ALA223 SER224 GLU225 ILE226 GLU227 LEU228 VAL229 PHE230 ARG231 PRO232 HIS233 PRO234 THR235 LEU236 MET237 GLU238 LYS239 ASP240 ASP241 SER242 ALA243 GLN244 THR245 ARG246 TYR247 ILE248 LYS249 THR250 SER251 GLY252 ASN253 ALA254 THR255 VAL256 ASP257 HIS258 LEU259 SER260 LYS261 TYR262 LEU263 ALA264 VAL265 ARG266 LEU267 ALA268 LEU269 GLU270 GLU271 LEU272 ARG273 SER274 ALA286 SER287 GLU288 LYS289 GLN290 TYR291 THR292 ILE293 TYR294 ILE295 ALA296 THR297 ALA298 SER299 GLY300 GLN301 PHE302 THR303 VAL304 LEU305 ASP306 GLY307 SER308 PHE309 SER310 LEU311 GLU312 LEU313 VAL314 SER315 GLU316 LYS317 TYR318 TRP319 LYS320 VAL321 ASN322 LYS323 PRO324 MET325 GLU326 LEU327 TYR328 TYR329 ALA330 PRO331 THR332 LYS333
Unit 12 ARG145 PRO146 ARG147 LEU148 LYS149 ASN150 VAL151 ASP152 ARG153 SER154 THR155 ALA156 GLN157 GLN158 LEU159 ALA160 VAL161 THR162 VAL163 GLY164 ASN165 VAL166 THR167 VAL168 ILE169 ILE170 THR171 ASP172 PHE173 LYS174 GLU175 LYS176
Ligands
Unit 13 EDO2
Unit 14 NHE1 EDO4
Unit 15 EDO1
Unit 16 EDO3
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany