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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 6 (PBP6) FRO IN APO STATE
Keywords PENICILLIN-BINDING PROTEIN, PBP6, DD-CARBOXYPEPTIDASE, PEPTI CARBOXYPEPTIDASE, CELL INNER MEMBRANE, CELL MEMBRANE, CELL CELL WALL BIOGENESIS/DEGRADATION, HYDROLASE, MEMBRANE, PEPT SYNTHESIS, PROTEASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3IT9     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC  A 348 2644 0
2  Protein   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC  B 345 2621 0
3  Protein   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC  C 345 2622 0
4  Protein   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC  D 350 2662 0
5  Ligand    E 2 0 23
6  Ligand    F 2 0 23
7  Ligand   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC  A 2 0 10
8  Ligand   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC  B 2 0 10
9  Ligand   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC  C 1 0 5
10  Ligand   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC  D 3 0 15
11 Water     421 0 421
total       1821 10549 507
Proteins
Unit 1 THR5 VAL6 GLU7 ALA8 PRO9 SER10 VAL11 ASP12 ALA13 ARG14 ALA15 TRP16 ILE17 LEU18 MET19 ASP20 TYR21 ALA22 SER23 GLY24 LYS25 VAL26 LEU27 ALA28 GLU29 GLY30 ASN31 ALA32 ASP33 GLU34 LYS35 LEU36 ASP37 PRO38 ALA39 SER40 LEU41 THR42 LYS43 ILE44 MET45 THR46 SER47 TYR48 VAL49 VAL50 GLY51 GLN52 ALA53 LEU54 LYS55 ALA56 ASP57 LYS58 ILE59 LYS60 LEU61 THR62 ASP63 MET64 VAL65 THR66 VAL67 GLY68 LYS69 ASP70 ALA71 TRP72 ALA73 THR74 GLY75 ASN76 PRO77 ALA78 LEU79 ARG80 GLY81 SER82 SER83 VAL84 MET85 PHE86 LEU87 LYS88 PRO89 GLY90 ASP91 GLN92 VAL93 SER94 VAL95 ALA96 ASP97 LEU98 ASN99 LYS100 GLY101 VAL102 ILE103 ILE104 GLN105 SER106 GLY107 ASN108 ASP109 ALA110 CYS111 ILE112 ALA113 LEU114 ALA115 ASP116 TYR117 VAL118 ALA119 GLY120 SER121 GLN122 GLU123 SER124 PHE125 ILE126 GLY127 LEU128 MET129 ASN130 GLY131 TYR132 ALA133 LYS134 LYS135 LEU136 GLY137 LEU138 THR139 ASN140 THR141 THR142 PHE143 GLN144 THR145 VAL146 HIS147 GLY148 LEU149 ASP150 ALA151 PRO152 GLY153 GLN154 PHE155 SER156 THR157 ALA158 ARG159 ASP160 MET161 ALA162 LEU163 LEU164 GLY165 LYS166 ALA167 LEU168 ILE169 HIS170 ASP171 VAL172 PRO173 GLU174 GLU175 TYR176 ALA177 ILE178 HIS179 LYS180 GLU181 LYS182 GLU183 PHE184 THR185 PHE186 ASN187 LYS188 ILE189 ARG190 GLN191 PRO192 ASN193 ARG194 ASN195 ARG196 LEU197 LEU198 TRP199 SER200 SER201 ASN202 LEU203 ASN204 VAL205 ASP206 GLY207 MET208 LYS209 THR210 GLY211 THR212 THR213 ALA214 GLY215 ALA216 GLY217 TYR218 ASN219 LEU220 VAL221 ALA222 SER223 ALA224 THR225 GLN226 GLY227 ASP228 MET229 ARG230 LEU231 ILE232 SER233 VAL234 VAL235 LEU236 GLY237 ALA238 LYS239 THR240 ASP241 ARG242 ILE243 ARG244 PHE245 ASN246 GLU247 SER248 GLU249 LYS250 LEU251 LEU252 THR253 TRP254 GLY255 PHE256 ARG257 PHE258 PHE259 GLU260 THR261 VAL262 THR263 PRO264 ILE265 LYS266 PRO267 ASP268 ALA269 THR270 PHE271 VAL272 THR273 GLN274 ARG275 VAL276 TRP277 PHE278 GLY279 ASP280 LYS281 SER282 GLU283 VAL284 ASN285 LEU286 GLY287 ALA288 GLY289 GLU290 ALA291 GLY292 SER293 VAL294 THR295 ILE296 PRO297 ARG298 GLY299 GLN300 LEU301 LYS302 ASN303 LEU304 LYS305 ALA306 SER307 TYR308 THR309 LEU310 THR311 GLU312 PRO313 GLN314 LEU315 THR316 ALA317 PRO318 LEU319 LYS320 LYS321 GLY322 GLN323 VAL324 VAL325 GLY326 THR327 ILE328 ASP329 PHE330 GLN331 LEU332 ASN333 GLY334 LYS335 SER336 ILE337 GLU338 GLN339 ARG340 PRO341 LEU342 ILE343 VAL344 MET345 GLU346 ASN347 VAL348 GLU349 GLU350 GLY351 GLY352
Unit 2 ALA8 PRO9 SER10 VAL11 ASP12 ALA13 ARG14 ALA15 TRP16 ILE17 LEU18 MET19 ASP20 TYR21 ALA22 SER23 GLY24 LYS25 VAL26 LEU27 ALA28 GLU29 GLY30 ASN31 ALA32 ASP33 GLU34 LYS35 LEU36 ASP37 PRO38 ALA39 SER40 LEU41 THR42 LYS43 ILE44 MET45 THR46 SER47 TYR48 VAL49 VAL50 GLY51 GLN52 ALA53 LEU54 LYS55 ALA56 ASP57 LYS58 ILE59 LYS60 LEU61 THR62 ASP63 MET64 VAL65 THR66 VAL67 GLY68 LYS69 ASP70 ALA71 TRP72 ALA73 THR74 GLY75 ASN76 PRO77 ALA78 LEU79 ARG80 GLY81 SER82 SER83 VAL84 MET85 PHE86 LEU87 LYS88 PRO89 GLY90 ASP91 GLN92 VAL93 SER94 VAL95 ALA96 ASP97 LEU98 ASN99 LYS100 GLY101 VAL102 ILE103 ILE104 GLN105 SER106 GLY107 ASN108 ASP109 ALA110 CYS111 ILE112 ALA113 LEU114 ALA115 ASP116 TYR117 VAL118 ALA119 GLY120 SER121 GLN122 GLU123 SER124 PHE125 ILE126 GLY127 LEU128 MET129 ASN130 GLY131 TYR132 ALA133 LYS134 LYS135 LEU136 GLY137 LEU138 THR139 ASN140 THR141 THR142 PHE143 GLN144 THR145 VAL146 HIS147 GLY148 LEU149 ASP150 ALA151 PRO152 GLY153 GLN154 PHE155 SER156 THR157 ALA158 ARG159 ASP160 MET161 ALA162 LEU163 LEU164 GLY165 LYS166 ALA167 LEU168 ILE169 HIS170 ASP171 VAL172 PRO173 GLU174 GLU175 TYR176 ALA177 ILE178 HIS179 LYS180 GLU181 LYS182 GLU183 PHE184 THR185 PHE186 ASN187 LYS188 ILE189 ARG190 GLN191 PRO192 ASN193 ARG194 ASN195 ARG196 LEU197 LEU198 TRP199 SER200 SER201 ASN202 LEU203 ASN204 VAL205 ASP206 GLY207 MET208 LYS209 THR210 GLY211 THR212 THR213 ALA214 GLY215 ALA216 GLY217 TYR218 ASN219 LEU220 VAL221 ALA222 SER223 ALA224 THR225 GLN226 GLY227 ASP228 MET229 ARG230 LEU231 ILE232 SER233 VAL234 VAL235 LEU236 GLY237 ALA238 LYS239 THR240 ASP241 ARG242 ILE243 ARG244 PHE245 ASN246 GLU247 SER248 GLU249 LYS250 LEU251 LEU252 THR253 TRP254 GLY255 PHE256 ARG257 PHE258 PHE259 GLU260 THR261 VAL262 THR263 PRO264 ILE265 LYS266 PRO267 ASP268 ALA269 THR270 PHE271 VAL272 THR273 GLN274 ARG275 VAL276 TRP277 PHE278 GLY279 ASP280 LYS281 SER282 GLU283 VAL284 ASN285 LEU286 GLY287 ALA288 GLY289 GLU290 ALA291 GLY292 SER293 VAL294 THR295 ILE296 PRO297 ARG298 GLY299 GLN300 LEU301 LYS302 ASN303 LEU304 LYS305 ALA306 SER307 TYR308 THR309 LEU310 THR311 GLU312 PRO313 GLN314 LEU315 THR316 ALA317 PRO318 LEU319 LYS320 LYS321 GLY322 GLN323 VAL324 VAL325 GLY326 THR327 ILE328 ASP329 PHE330 GLN331 LEU332 ASN333 GLY334 LYS335 SER336 ILE337 GLU338 GLN339 ARG340 PRO341 LEU342 ILE343 VAL344 MET345 GLU346 ASN347 VAL348 GLU349 GLU350 GLY351 GLY352
Unit 3 GLU7 ALA8 PRO9 SER10 VAL11 ASP12 ALA13 ARG14 ALA15 TRP16 ILE17 LEU18 MET19 ASP20 TYR21 ALA22 SER23 GLY24 LYS25 VAL26 LEU27 ALA28 GLU29 GLY30 ASN31 ALA32 ASP33 GLU34 LYS35 LEU36 ASP37 PRO38 ALA39 SER40 LEU41 THR42 LYS43 ILE44 MET45 THR46 SER47 TYR48 VAL49 VAL50 GLY51 GLN52 ALA53 LEU54 LYS55 ALA56 ASP57 LYS58 ILE59 LYS60 LEU61 THR62 ASP63 MET64 VAL65 THR66 VAL67 GLY68 LYS69 ASP70 ALA71 TRP72 ALA73 THR74 GLY75 ASN76 PRO77 ALA78 LEU79 ARG80 GLY81 SER82 SER83 VAL84 MET85 PHE86 LEU87 LYS88 PRO89 GLY90 ASP91 GLN92 VAL93 SER94 VAL95 ALA96 ASP97 LEU98 ASN99 LYS100 GLY101 VAL102 ILE103 ILE104 GLN105 SER106 GLY107 ASN108 ASP109 ALA110 CYS111 ILE112 ALA113 LEU114 ALA115 ASP116 TYR117 VAL118 ALA119 GLY120 SER121 GLN122 GLU123 SER124 PHE125 ILE126 GLY127 LEU128 MET129 ASN130 GLY131 TYR132 ALA133 LYS134 LYS135 LEU136 GLY137 LEU138 THR139 ASN140 THR141 THR142 PHE143 GLN144 THR145 VAL146 HIS147 GLY148 LEU149 ASP150 ALA151 PRO152 GLY153 GLN154 PHE155 SER156 THR157 ALA158 ARG159 ASP160 MET161 ALA162 LEU163 LEU164 GLY165 LYS166 ALA167 LEU168 ILE169 HIS170 ASP171 VAL172 PRO173 GLU174 GLU175 TYR176 ALA177 ILE178 HIS179 LYS180 GLU181 LYS182 GLU183 PHE184 THR185 PHE186 ASN187 LYS188 ILE189 ARG190 GLN191 PRO192 ASN193 ARG194 ASN195 ARG196 LEU197 LEU198 TRP199 SER200 SER201 ASN202 LEU203 ASN204 VAL205 ASP206 GLY207 MET208 LYS209 THR210 GLY211 THR212 THR213 ALA214 GLY215 ALA216 GLY217 TYR218 ASN219 LEU220 VAL221 ALA222 SER223 ALA224 THR225 GLN226 GLY227 ASP228 MET229 ARG230 LEU231 ILE232 SER233 VAL234 VAL235 LEU236 GLY237 ALA238 LYS239 THR240 ASP241 ARG242 ILE243 ARG244 PHE245 ASN246 GLU247 SER248 GLU249 LYS250 LEU251 LEU252 THR253 TRP254 GLY255 PHE256 ARG257 PHE258 PHE259 GLU260 THR261 VAL262 THR263 PRO264 ILE265 LYS266 PRO267 ASP268 ALA269 THR270 PHE271 VAL272 THR273 GLN274 ARG275 VAL276 TRP277 PHE278 GLY279 ASP280 LYS281 SER282 GLU283 VAL284 ASN285 LEU286 GLY287 ALA288 GLY289 GLU290 ALA291 GLY292 SER293 VAL294 THR295 ILE296 PRO297 ARG298 GLY299 GLN300 LEU301 LYS302 ASN303 LEU304 LYS305 ALA306 SER307 TYR308 THR309 LEU310 THR311 GLU312 PRO313 GLN314 LEU315 THR316 ALA317 PRO318 LEU319 LYS320 LYS321 GLY322 GLN323 VAL324 VAL325 GLY326 THR327 ILE328 ASP329 PHE330 GLN331 LEU332 GLY334 LYS335 SER336 ILE337 GLU338 GLN339 ARG340 PRO341 LEU342 ILE343 VAL344 MET345 GLU346 ASN347 VAL348 GLU349 GLU350 GLY351 GLY352
Unit 4 GLU3 GLN4 THR5 VAL6 GLU7 ALA8 PRO9 SER10 VAL11 ASP12 ALA13 ARG14 ALA15 TRP16 ILE17 LEU18 MET19 ASP20 TYR21 ALA22 SER23 GLY24 LYS25 VAL26 LEU27 ALA28 GLU29 GLY30 ASN31 ALA32 ASP33 GLU34 LYS35 LEU36 ASP37 PRO38 ALA39 SER40 LEU41 THR42 LYS43 ILE44 MET45 THR46 SER47 TYR48 VAL49 VAL50 GLY51 GLN52 ALA53 LEU54 LYS55 ALA56 ASP57 LYS58 ILE59 LYS60 LEU61 THR62 ASP63 MET64 VAL65 THR66 VAL67 GLY68 LYS69 ASP70 ALA71 TRP72 ALA73 THR74 GLY75 ASN76 PRO77 ALA78 LEU79 ARG80 GLY81 SER82 SER83 VAL84 MET85 PHE86 LEU87 LYS88 PRO89 GLY90 ASP91 GLN92 VAL93 SER94 VAL95 ALA96 ASP97 LEU98 ASN99 LYS100 GLY101 VAL102 ILE103 ILE104 GLN105 SER106 GLY107 ASN108 ASP109 ALA110 CYS111 ILE112 ALA113 LEU114 ALA115 ASP116 TYR117 VAL118 ALA119 GLY120 SER121 GLN122 GLU123 SER124 PHE125 ILE126 GLY127 LEU128 MET129 ASN130 GLY131 TYR132 ALA133 LYS134 LYS135 LEU136 GLY137 LEU138 THR139 ASN140 THR141 THR142 PHE143 GLN144 THR145 VAL146 HIS147 GLY148 LEU149 ASP150 ALA151 PRO152 GLY153 GLN154 PHE155 SER156 THR157 ALA158 ARG159 ASP160 MET161 ALA162 LEU163 LEU164 GLY165 LYS166 ALA167 LEU168 ILE169 HIS170 ASP171 VAL172 PRO173 GLU174 GLU175 TYR176 ALA177 ILE178 HIS179 LYS180 GLU181 LYS182 GLU183 PHE184 THR185 PHE186 ASN187 LYS188 ILE189 ARG190 GLN191 PRO192 ASN193 ARG194 ASN195 ARG196 LEU197 LEU198 TRP199 SER200 SER201 ASN202 LEU203 ASN204 VAL205 ASP206 GLY207 MET208 LYS209 THR210 GLY211 THR212 THR213 ALA214 GLY215 ALA216 GLY217 TYR218 ASN219 LEU220 VAL221 ALA222 SER223 ALA224 THR225 GLN226 GLY227 ASP228 MET229 ARG230 LEU231 ILE232 SER233 VAL234 VAL235 LEU236 GLY237 ALA238 LYS239 THR240 ASP241 ARG242 ILE243 ARG244 PHE245 ASN246 GLU247 SER248 GLU249 LYS250 LEU251 LEU252 THR253 TRP254 GLY255 PHE256 ARG257 PHE258 PHE259 GLU260 THR261 VAL262 THR263 PRO264 ILE265 LYS266 PRO267 ASP268 ALA269 THR270 PHE271 VAL272 THR273 GLN274 ARG275 VAL276 TRP277 PHE278 GLY279 ASP280 LYS281 SER282 GLU283 VAL284 ASN285 LEU286 GLY287 ALA288 GLY289 GLU290 ALA291 GLY292 SER293 VAL294 THR295 ILE296 PRO297 ARG298 GLY299 GLN300 LEU301 LYS302 ASN303 LEU304 LYS305 ALA306 SER307 TYR308 THR309 LEU310 THR311 GLU312 PRO313 GLN314 LEU315 THR316 ALA317 PRO318 LEU319 LYS320 LYS321 GLY322 GLN323 VAL324 VAL325 GLY326 THR327 ILE328 ASP329 PHE330 GLN331 LEU332 ASN333 GLY334 LYS335 SER336 ILE337 GLU338 GLN339 ARG340 PRO341 LEU342 ILE343 VAL344 MET345 GLU346 ASN347 VAL348 GLU349 GLU350 GLY351 GLY352
Ligands
Unit 5 GLC1 FRU2
Unit 6 GLC1 FRU2
Unit 7 SO4353 SO4354
Unit 8 SO4353 SO4354
Unit 9 SO4353
Unit 10 SO4353 SO4354 SO4355
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany