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Title | CRYSTAL STRUCTURE OF ALPHA 1-2 MANNOBIOSE BOUND TRIMERIC HUM SURFACTANT PROTEIN D | |
Keywords | TRIMERIC RECOMBINANT FRAGMENT, NECK+CRD, COLLAGEN, DISULFIDE EXTRACELLULAR MATRIX, GASEOUS EXCHANGE, GLYCOPROTEIN, HYDRO LECTIN, SECRETED, SURFACE FILM, SUGAR BINDING PROTEIN | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3IKQ | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | PULMONARY SURFACTANT-ASSOCIATED PROTEIN D | A | 146 | 1115 | 0 |
2 | Protein | PULMONARY SURFACTANT-ASSOCIATED PROTEIN D | B | 146 | 1115 | 0 |
3 | Protein | PULMONARY SURFACTANT-ASSOCIATED PROTEIN D | C | 145 | 1106 | 0 |
4 | Ligand | PULMONARY SURFACTANT-ASSOCIATED PROTEIN D | A | 5 | 0 | 16 |
5 | Ligand | PULMONARY SURFACTANT-ASSOCIATED PROTEIN D | B | 4 | 0 | 15 |
6 | Ligand | PULMONARY SURFACTANT-ASSOCIATED PROTEIN D | C | 4 | 0 | 15 |
7 | Water | 182 | 0 | 182 | ||
total | 632 | 3336 | 228 |
Unit 1 | GLN210 VAL211 GLU212 ALA213 LEU214 GLN215 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ASP325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 ARG343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355 |
Unit 2 | GLN210 VAL211 GLU212 ALA213 LEU214 GLN215 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ASP325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 ARG343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355 |
Unit 3 | VAL211 GLU212 ALA213 LEU214 GLN215 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ASP325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 ARG343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355 |
Unit 4 | CA401 CA402 CA403 CA404 MAN405 |
Unit 5 | CA401 CA402 CA403 MAN405 |
Unit 6 | CA401 CA402 CA403 MAN405 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |