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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RIBOKINASE IN COMPLEX WITH ATP AND GLYC THE ACTIVE SITE FROM KLEBSIELLA PNEUMONIAE
Keywords TRANSFERASE, KINASE, SAD, RIBOSE, D-RIBOSE METABOLIC PROCESS RIBOKINASE, PFKB FAMILY, 11206L1, PSI-II, NYSGXRC, STRUCTUR GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEAR FOR STRUCTURAL GENOMICS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3IKH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CARBOHYDRATE KINASE  A 286 2087 40
2  Protein   CARBOHYDRATE KINASE  B 283 2069 40
3  Protein   CARBOHYDRATE KINASE  C 285 2081 40
4  Protein   CARBOHYDRATE KINASE  D 286 2087 40
5  Ligand   CARBOHYDRATE KINASE  A 1 0 31
6  Ligand   CARBOHYDRATE KINASE  B 1 0 31
7  Ligand   CARBOHYDRATE KINASE  C 2 0 37
8  Ligand   CARBOHYDRATE KINASE  D 2 0 37
9 Water     380 0 380
total       1526 8324 676
Proteins
Unit 1 SER-2 LEU-1 ARG2 VAL3 TYR4 VAL5 THR6 GLY7 ASN8 ILE9 THR10 VAL11 ASP12 GLU13 THR14 TRP15 SER16 ILE17 PRO18 ASP19 ILE20 PRO21 LYS22 LYS23 GLY24 ALA25 SER26 ILE27 HIS28 GLY29 VAL30 LYS31 VAL32 SER33 GLN34 ASP35 ILE36 GLY37 GLY38 LYS39 GLY40 ALA41 ASN42 GLN43 ALA44 ILE45 ILE46 LEU47 SER48 ARG49 CYS50 GLY51 ILE52 GLU53 THR54 ARG55 LEU56 ILE57 ALA58 ALA59 THR60 GLY61 ASN62 ASP63 SER64 ASN65 GLY66 ALA67 TRP68 ILE69 ARG70 GLN71 GLN72 ILE73 LYS74 ASN75 GLU76 PRO77 LEU78 MSE79 LEU80 LEU81 PRO82 ASP83 GLY84 HIS85 PHE86 ASN87 GLN88 HIS89 SER90 ASP91 THR92 SER93 ILE94 ILE95 LEU96 ASN97 SER98 ALA99 ASP100 GLY101 ASP102 ASN103 ALA104 ILE105 ILE106 THR107 THR108 THR109 ALA110 ALA111 ALA112 ASP113 THR114 PHE115 SER116 LEU117 ASP118 GLU119 MSE120 ILE121 PRO122 HIS123 MSE124 ALA125 ASP126 ALA127 VAL128 ALA129 GLY130 ASP131 ILE132 LEU133 LEU134 GLN135 GLN136 GLY137 ASN138 PHE139 SER140 LEU141 ASP142 LYS143 THR144 ARG145 ALA146 LEU147 PHE148 GLN149 TYR150 ALA151 ARG152 SER153 ARG154 GLY155 MSE156 THR157 THR158 VAL159 PHE160 ASN161 PRO162 SER163 PRO164 VAL165 ASN166 PRO167 ASP168 PHE169 CYS170 HIS171 LEU172 TRP173 PRO174 LEU175 ILE176 ASP177 ILE178 ALA179 VAL180 VAL181 ASN182 GLU183 SER184 GLU185 ALA186 GLU187 LEU188 LEU189 GLN190 PRO191 TYR192 GLY193 VAL194 LYS195 THR196 LEU197 VAL198 ILE199 THR200 GLN201 GLY202 ALA203 ALA204 GLY205 ALA206 TRP207 LEU208 VAL209 GLN210 GLU211 GLY212 GLN213 ARG214 GLN215 PHE216 CYS217 PRO218 ALA219 VAL220 PRO221 ALA222 GLU223 ALA224 LEU225 ASP226 THR227 THR228 GLY229 ALA230 GLY231 ASP232 THR233 PHE234 LEU235 ALA236 VAL237 MSE238 LEU239 ALA240 SER241 ALA242 LEU243 LEU244 ARG245 GLY246 VAL247 ALA248 PRO249 ASP250 ALA251 LEU252 ALA253 LEU254 ALA255 HIS256 ALA257 SER258 ARG259 ALA260 ALA261 ALA262 ILE263 THR264 VAL265 SER266 ARG267 ARG268 GLY269 THR270 LEU271 SER272 ALA273 PHE274 PRO275 GLY276 SER277 ARG278 GLU279 LEU280 ALA281 ALA282 LEU283 LEU284 THR285
Unit 2 LEU-1 ARG2 VAL3 TYR4 VAL5 THR6 GLY7 ASN8 ILE9 THR10 VAL11 ASP12 GLU13 THR14 TRP15 SER16 ILE17 PRO18 ASP19 ILE20 PRO21 LYS22 LYS23 GLY24 ALA25 SER26 ILE27 HIS28 GLY29 VAL30 LYS31 VAL32 SER33 GLN34 ASP35 ILE36 GLY37 GLY38 LYS39 GLY40 ALA41 ASN42 GLN43 ALA44 ILE45 ILE46 LEU47 SER48 ARG49 CYS50 GLY51 ILE52 GLU53 THR54 ARG55 LEU56 ILE57 ALA58 ALA59 THR60 GLY61 ASN62 ASP63 SER64 ASN65 GLY66 ALA67 TRP68 ILE69 ARG70 GLN71 GLN72 ILE73 LYS74 ASN75 GLU76 PRO77 LEU78 MSE79 LEU80 LEU81 PRO82 ASP83 GLY84 HIS85 PHE86 ASN87 GLN88 HIS89 SER90 ASP91 THR92 SER93 ILE94 ILE95 LEU96 ASN97 SER98 ALA99 ASP102 ASN103 ALA104 ILE105 ILE106 THR107 THR108 THR109 ALA110 ALA111 ALA112 ASP113 THR114 PHE115 SER116 LEU117 ASP118 GLU119 MSE120 ILE121 PRO122 HIS123 MSE124 ALA125 ASP126 ALA127 VAL128 ALA129 GLY130 ASP131 ILE132 LEU133 LEU134 GLN135 GLN136 GLY137 ASN138 PHE139 SER140 LEU141 ASP142 LYS143 THR144 ARG145 ALA146 LEU147 PHE148 GLN149 TYR150 ALA151 ARG152 SER153 ARG154 GLY155 MSE156 THR157 THR158 VAL159 PHE160 ASN161 PRO162 SER163 PRO164 VAL165 ASN166 PRO167 ASP168 PHE169 CYS170 HIS171 LEU172 TRP173 PRO174 LEU175 ILE176 ASP177 ILE178 ALA179 VAL180 VAL181 ASN182 GLU183 SER184 GLU185 ALA186 GLU187 LEU188 LEU189 GLN190 PRO191 TYR192 GLY193 VAL194 LYS195 THR196 LEU197 VAL198 ILE199 THR200 GLN201 GLY202 ALA203 ALA204 GLY205 ALA206 TRP207 LEU208 VAL209 GLN210 GLU211 GLY212 GLN213 ARG214 GLN215 PHE216 CYS217 PRO218 ALA219 VAL220 PRO221 ALA222 GLU223 ALA224 LEU225 ASP226 THR227 THR228 GLY229 ALA230 GLY231 ASP232 THR233 PHE234 LEU235 ALA236 VAL237 MSE238 LEU239 ALA240 SER241 ALA242 LEU243 LEU244 ARG245 GLY246 VAL247 ALA248 PRO249 ASP250 ALA251 LEU252 ALA253 LEU254 ALA255 HIS256 ALA257 SER258 ARG259 ALA260 ALA261 ALA262 ILE263 THR264 VAL265 SER266 ARG267 ARG268 GLY269 THR270 LEU271 SER272 ALA273 PHE274 PRO275 GLY276 SER277 ARG278 GLU279 LEU280 ALA281 ALA282 LEU283 LEU284 THR285
Unit 3 LEU-1 ARG2 VAL3 TYR4 VAL5 THR6 GLY7 ASN8 ILE9 THR10 VAL11 ASP12 GLU13 THR14 TRP15 SER16 ILE17 PRO18 ASP19 ILE20 PRO21 LYS22 LYS23 GLY24 ALA25 SER26 ILE27 HIS28 GLY29 VAL30 LYS31 VAL32 SER33 GLN34 ASP35 ILE36 GLY37 GLY38 LYS39 GLY40 ALA41 ASN42 GLN43 ALA44 ILE45 ILE46 LEU47 SER48 ARG49 CYS50 GLY51 ILE52 GLU53 THR54 ARG55 LEU56 ILE57 ALA58 ALA59 THR60 GLY61 ASN62 ASP63 SER64 ASN65 GLY66 ALA67 TRP68 ILE69 ARG70 GLN71 GLN72 ILE73 LYS74 ASN75 GLU76 PRO77 LEU78 MSE79 LEU80 LEU81 PRO82 ASP83 GLY84 HIS85 PHE86 ASN87 GLN88 HIS89 SER90 ASP91 THR92 SER93 ILE94 ILE95 LEU96 ASN97 SER98 ALA99 ASP100 GLY101 ASP102 ASN103 ALA104 ILE105 ILE106 THR107 THR108 THR109 ALA110 ALA111 ALA112 ASP113 THR114 PHE115 SER116 LEU117 ASP118 GLU119 MSE120 ILE121 PRO122 HIS123 MSE124 ALA125 ASP126 ALA127 VAL128 ALA129 GLY130 ASP131 ILE132 LEU133 LEU134 GLN135 GLN136 GLY137 ASN138 PHE139 SER140 LEU141 ASP142 LYS143 THR144 ARG145 ALA146 LEU147 PHE148 GLN149 TYR150 ALA151 ARG152 SER153 ARG154 GLY155 MSE156 THR157 THR158 VAL159 PHE160 ASN161 PRO162 SER163 PRO164 VAL165 ASN166 PRO167 ASP168 PHE169 CYS170 HIS171 LEU172 TRP173 PRO174 LEU175 ILE176 ASP177 ILE178 ALA179 VAL180 VAL181 ASN182 GLU183 SER184 GLU185 ALA186 GLU187 LEU188 LEU189 GLN190 PRO191 TYR192 GLY193 VAL194 LYS195 THR196 LEU197 VAL198 ILE199 THR200 GLN201 GLY202 ALA203 ALA204 GLY205 ALA206 TRP207 LEU208 VAL209 GLN210 GLU211 GLY212 GLN213 ARG214 GLN215 PHE216 CYS217 PRO218 ALA219 VAL220 PRO221 ALA222 GLU223 ALA224 LEU225 ASP226 THR227 THR228 GLY229 ALA230 GLY231 ASP232 THR233 PHE234 LEU235 ALA236 VAL237 MSE238 LEU239 ALA240 SER241 ALA242 LEU243 LEU244 ARG245 GLY246 VAL247 ALA248 PRO249 ASP250 ALA251 LEU252 ALA253 LEU254 ALA255 HIS256 ALA257 SER258 ARG259 ALA260 ALA261 ALA262 ILE263 THR264 VAL265 SER266 ARG267 ARG268 GLY269 THR270 LEU271 SER272 ALA273 PHE274 PRO275 GLY276 SER277 ARG278 GLU279 LEU280 ALA281 ALA282 LEU283 LEU284 THR285
Unit 4 SER-2 LEU-1 ARG2 VAL3 TYR4 VAL5 THR6 GLY7 ASN8 ILE9 THR10 VAL11 ASP12 GLU13 THR14 TRP15 SER16 ILE17 PRO18 ASP19 ILE20 PRO21 LYS22 LYS23 GLY24 ALA25 SER26 ILE27 HIS28 GLY29 VAL30 LYS31 VAL32 SER33 GLN34 ASP35 ILE36 GLY37 GLY38 LYS39 GLY40 ALA41 ASN42 GLN43 ALA44 ILE45 ILE46 LEU47 SER48 ARG49 CYS50 GLY51 ILE52 GLU53 THR54 ARG55 LEU56 ILE57 ALA58 ALA59 THR60 GLY61 ASN62 ASP63 SER64 ASN65 GLY66 ALA67 TRP68 ILE69 ARG70 GLN71 GLN72 ILE73 LYS74 ASN75 GLU76 PRO77 LEU78 MSE79 LEU80 LEU81 PRO82 ASP83 GLY84 HIS85 PHE86 ASN87 GLN88 HIS89 SER90 ASP91 THR92 SER93 ILE94 ILE95 LEU96 ASN97 SER98 ALA99 ASP100 GLY101 ASP102 ASN103 ALA104 ILE105 ILE106 THR107 THR108 THR109 ALA110 ALA111 ALA112 ASP113 THR114 PHE115 SER116 LEU117 ASP118 GLU119 MSE120 ILE121 PRO122 HIS123 MSE124 ALA125 ASP126 ALA127 VAL128 ALA129 GLY130 ASP131 ILE132 LEU133 LEU134 GLN135 GLN136 GLY137 ASN138 PHE139 SER140 LEU141 ASP142 LYS143 THR144 ARG145 ALA146 LEU147 PHE148 GLN149 TYR150 ALA151 ARG152 SER153 ARG154 GLY155 MSE156 THR157 THR158 VAL159 PHE160 ASN161 PRO162 SER163 PRO164 VAL165 ASN166 PRO167 ASP168 PHE169 CYS170 HIS171 LEU172 TRP173 PRO174 LEU175 ILE176 ASP177 ILE178 ALA179 VAL180 VAL181 ASN182 GLU183 SER184 GLU185 ALA186 GLU187 LEU188 LEU189 GLN190 PRO191 TYR192 GLY193 VAL194 LYS195 THR196 LEU197 VAL198 ILE199 THR200 GLN201 GLY202 ALA203 ALA204 GLY205 ALA206 TRP207 LEU208 VAL209 GLN210 GLU211 GLY212 GLN213 ARG214 GLN215 PHE216 CYS217 PRO218 ALA219 VAL220 PRO221 ALA222 GLU223 ALA224 LEU225 ASP226 THR227 THR228 GLY229 ALA230 GLY231 ASP232 THR233 PHE234 LEU235 ALA236 VAL237 MSE238 LEU239 ALA240 SER241 ALA242 LEU243 LEU244 ARG245 GLY246 VAL247 ALA248 PRO249 ASP250 ALA251 LEU252 ALA253 LEU254 ALA255 HIS256 ALA257 SER258 ARG259 ALA260 ALA261 ALA262 ILE263 THR264 VAL265 SER266 ARG267 ARG268 GLY269 THR270 LEU271 SER272 ALA273 PHE274 PRO275 GLY276 SER277 ARG278 GLU279 LEU280 ALA281 ALA282 LEU283 LEU284 THR285
Ligands
Unit 5 ATP900
Unit 6 ATP900
Unit 7 GOL501 ATP900
Unit 8 GOL501 ATP900
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany