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Sequence, Chains, Asymmetric and Biological Units

Title COVALENT UBIQUITIN-USP5 COMPLEX
Keywords HYDROLASE, PROTEASE, THIOL PROTEASE, UBL CONJUGATION PATHWAY, METAL-BINDING, ZINC-FINGER,STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, ACETYLATION, ALTERNATIVE SPLICING, PHOSPHOPROTEIN, ZINC, CYTOPLASM, ISOPEPTIDE BOND, NUCLEUS, UBL CONJUGATION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3IHP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5  A 673 5239 0
2  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5  B 681 5300 0
3  Protein   UBIQUITIN  C 75 597 0
4  Protein   UBIQUITIN  D 75 597 0
5  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5  A 1 0 1
6  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5  B 1 0 1
7  Ligand   UBIQUITIN  C 1 0 3
8  Ligand   UBIQUITIN  D 2 0 4
9 Water     32 0 32
total       1541 11733 41
Proteins
Unit 1 MET1 ALA2 GLU3 LEU4 SER5 GLU6 GLU7 ALA8 LEU9 LEU10 SER11 VAL12 LEU13 PRO14 THR15 ILE16 ARG17 VAL18 PRO19 LYS20 ALA21 GLY22 ASP23 ARG24 VAL25 HIS26 LYS27 ASP28 GLU29 CYS30 ALA31 PHE32 SER33 PHE34 ASP35 THR36 PRO37 GLU38 SER39 GLU40 GLY41 GLY42 LEU43 TYR44 ILE45 CYS46 MET47 ASN48 THR49 PHE50 LEU51 GLY52 PHE53 GLY54 LYS55 GLN56 TYR57 VAL58 GLU59 ARG60 HIS61 PHE62 ASN63 LYS64 THR65 GLY66 GLN67 ARG68 VAL69 TYR70 LEU71 HIS72 LEU73 ARG74 ARG75 THR76 ASP117 GLU118 ASP119 VAL120 LYS121 ILE122 VAL123 ILE124 LEU125 PRO126 ASP127 TYR128 LEU129 GLU130 ILE131 ALA132 ARG133 ASP134 GLY135 LEU136 GLY137 GLY138 LEU139 PRO140 ASP141 ILE142 VAL143 ARG144 ASP145 ARG146 VAL147 THR148 SER149 ALA150 VAL151 GLU152 ALA153 LEU154 LEU155 SER156 VAL173 ARG174 GLN175 VAL176 SER177 LYS178 HIS179 ALA180 PHE181 SER182 LEU183 LYS184 GLN185 LEU186 ASP187 ASN188 PRO189 ALA190 ARG191 ILE192 PRO193 PRO194 CYS195 GLY196 TRP197 LYS198 CYS199 SER200 LYS201 CYS202 ASP203 MET204 ARG205 GLU206 ASN207 LEU208 TRP209 LEU210 ASN211 LEU212 THR213 ASP214 GLY215 SER216 ILE217 LEU218 CYS219 GLY220 ARG221 ARG222 TYR223 ASP225 GLY226 SER227 GLY228 GLY229 ASN230 ASN231 HIS232 ALA233 VAL234 GLU235 HIS236 TYR237 ARG238 GLU239 THR240 GLY241 TYR242 PRO243 LEU244 ALA245 VAL246 LYS247 LEU248 GLY249 THR250 ILE251 THR252 PRO253 ASP254 GLY255 ALA256 ASP257 VAL258 TYR259 SER260 TYR261 ASP262 GLU263 ASP264 ASP265 MET266 VAL267 LEU268 ASP269 PRO270 SER271 LEU272 ALA273 GLU274 HIS275 LEU276 SER277 HIS278 PHE279 GLY280 ILE281 ASP282 MET283 PRO319 LEU320 PHE321 GLY322 PRO323 GLY324 TYR325 THR326 GLY327 ILE328 ARG329 ASN330 LEU331 GLY332 ASN333 SER334 CYS335 TYR336 LEU337 ASN338 SER339 VAL340 VAL341 GLN342 VAL343 LEU344 PHE345 SER346 ILE347 PRO348 ASP349 PHE350 GLN351 ARG352 LYS353 TYR354 VAL355 ASP356 LYS357 LEU358 GLU359 LYS360 ILE361 PHE362 GLN363 ASN364 ALA365 PRO366 THR367 ASP368 PRO369 THR370 GLN371 ASP372 PHE373 SER374 THR375 GLN376 VAL377 ALA378 LYS379 LEU380 GLY381 HIS382 GLY383 LEU384 LEU385 SER386 GLY387 GLU388 ASP410 GLY411 ILE412 ALA413 PRO414 ARG415 MET416 PHE417 LYS418 ALA419 LEU420 ILE421 GLY422 LYS423 GLY424 HIS425 PRO426 GLU427 PHE428 SER429 THR430 ASN431 ARG432 GLN433 GLN434 ASP435 ALA436 GLN437 GLU438 PHE439 PHE440 LEU441 HIS442 LEU443 ILE444 ASN445 MET446 VAL447 GLU448 ARG449 ASN450 CYS451 ARG452 SER453 SER454 GLU455 ASN456 PRO457 ASN458 GLU459 VAL460 PHE461 ARG462 PHE463 LEU464 VAL465 GLU466 GLU467 LYS468 ILE469 LYS470 CYS471 LEU472 ALA473 THR474 GLU475 LYS476 VAL477 LYS478 TYR479 THR480 GLN481 ARG482 VAL483 ASP484 TYR485 ILE486 MET487 GLN488 LEU489 PRO490 VAL491 PRO492 MET493 ASP494 ALA495 ALA496 LEU497 ASN498 LYS499 GLU500 GLU501 LEU502 LEU503 GLU504 TYR505 GLU506 GLU507 LYS508 LYS509 ARG510 GLN511 ALA512 GLU513 GLU514 GLU515 LYS516 MET517 ALA518 LEU519 PRO520 GLU521 LEU522 VAL523 ARG524 ALA525 GLN526 VAL527 PRO528 PHE529 SER530 SER531 CYS532 LEU533 GLU534 ALA535 TYR536 GLY537 ALA538 PRO539 GLU540 GLN541 VAL542 ASP543 ASP544 PHE545 TRP546 SER547 THR548 ALA549 LEU550 GLN551 ALA552 LYS553 SER554 VAL555 ALA556 VAL557 LYS558 THR559 THR560 ARG561 PHE562 ALA563 SER564 PHE565 PRO566 ASP567 TYR568 LEU569 VAL570 ILE571 GLN572 ILE573 LYS574 LYS575 PHE576 THR577 PHE578 GLY579 LEU580 ASP581 TRP582 VAL583 PRO584 LYS585 LYS586 LEU587 ASP588 VAL589 SER590 ILE591 GLU592 MET593 PRO594 GLU595 GLU596 LEU597 ASP598 ILE599 SER600 GLN601 LEU602 ARG603 GLY604 THR605 GLY606 LEU607 GLN608 PRO609 GLY610 GLU611 GLU612 GLU613 LEU614 PRO615 ASP616 ILE617 GLU634 SER635 VAL636 ILE637 ILE638 GLN639 LEU640 VAL641 GLU642 MET643 GLY644 PHE645 PRO646 MET647 ASP648 ALA649 CYS650 ARG651 LYS652 ALA653 VAL654 TYR655 TYR656 THR657 GLY658 ASN659 SER660 GLY661 ALA662 GLU663 ALA664 ALA665 MET666 ASN667 TRP668 VAL669 MET670 SER671 HIS672 MET673 ASP674 ASP675 PRO676 ASP677 PHE678 ALA679 ASN680 PRO681 LEU682 ILE683 LEU684 PRO698 PRO699 PRO700 GLU701 ASP702 CYS703 VAL704 THR705 THR706 ILE707 VAL708 SER709 MET710 GLY711 PHE712 SER713 ARG714 ASP715 GLN716 ALA717 LEU718 LYS719 ALA720 LEU721 ARG722 ALA723 THR724 ASN725 ASN726 SER727 LEU728 GLU729 ARG730 ALA731 VAL732 ASP733 TRP734 ILE735 PHE736 SER737 HIS738 ILE739 ASP740 ASP741 LEU742 ASP743 ALA744 GLU745 ALA746 ALA747 MET748 ASP749 PRO769 LYS770 VAL771 ARG772 ASP773 GLY774 PRO775 GLY776 LYS777 TYR778 GLN779 LEU780 PHE781 ALA782 PHE783 ILE784 SER785 HIS786 MET787 GLY788 THR789 SER790 THR791 MET792 CYS793 GLY794 HIS795 TYR796 VAL797 CYS798 HIS799 ILE800 LYS801 LYS802 GLU803 GLY804 ARG805 TRP806 VAL807 ILE808 TYR809 ASN810 ASP811 GLN812 LYS813 VAL814 CYS815 ALA816 SER817 GLU818 LYS819 PRO820 PRO821 LYS822 ASP823 LEU824 GLY825 TYR826 ILE827 TYR828 PHE829 TYR830 GLN831 ARG832 VAL833 ALA834
Unit 2 MET1 ALA2 GLU3 LEU4 SER5 GLU6 GLU7 ALA8 LEU9 LEU10 SER11 VAL12 LEU13 PRO14 THR15 ILE16 ARG17 VAL18 PRO19 LYS20 ALA21 GLY22 ASP23 ARG24 VAL25 HIS26 LYS27 ASP28 GLU29 CYS30 ALA31 PHE32 SER33 PHE34 ASP35 THR36 PRO37 GLU38 SER39 GLU40 GLY41 GLY42 LEU43 TYR44 ILE45 CYS46 MET47 ASN48 THR49 PHE50 LEU51 GLY52 PHE53 GLY54 LYS55 GLN56 TYR57 VAL58 GLU59 ARG60 HIS61 PHE62 ASN63 LYS64 THR65 GLY66 GLN67 ARG68 VAL69 TYR70 LEU71 HIS72 LEU73 ARG74 ARG75 THR76 ASP117 GLU118 ASP119 VAL120 LYS121 ILE122 VAL123 ILE124 LEU125 PRO126 ASP127 TYR128 LEU129 GLU130 ILE131 ALA132 ARG133 ASP134 GLY135 LEU136 GLY137 GLY138 LEU139 PRO140 ASP141 ILE142 VAL143 ARG144 ASP145 ARG146 VAL147 THR148 SER149 ALA150 VAL151 GLU152 ALA153 LEU154 LEU155 SER156 VAL173 ARG174 GLN175 VAL176 SER177 LYS178 HIS179 ALA180 PHE181 SER182 LEU183 LYS184 GLN185 LEU186 ASP187 ASN188 PRO189 ALA190 ARG191 ILE192 PRO193 PRO194 CYS195 GLY196 TRP197 LYS198 CYS199 SER200 LYS201 CYS202 ASP203 MET204 ARG205 GLU206 ASN207 LEU208 TRP209 LEU210 ASN211 LEU212 THR213 ASP214 GLY215 SER216 ILE217 LEU218 CYS219 GLY220 ARG221 ARG222 TYR223 PHE224 ASP225 GLY226 SER227 GLY228 GLY229 ASN230 ASN231 HIS232 ALA233 VAL234 GLU235 HIS236 TYR237 ARG238 GLU239 THR240 GLY241 TYR242 PRO243 LEU244 ALA245 VAL246 LYS247 LEU248 GLY249 THR250 ILE251 THR252 PRO253 ASP254 GLY255 ALA256 ASP257 VAL258 TYR259 SER260 TYR261 ASP262 GLU263 ASP264 ASP265 MET266 VAL267 LEU268 ASP269 PRO270 SER271 LEU272 ALA273 GLU274 HIS275 LEU276 SER277 HIS278 PHE279 GLY280 ILE281 ASP282 MET283 PRO316 LEU317 LYS318 PRO319 LEU320 PHE321 GLY322 PRO323 GLY324 TYR325 THR326 GLY327 ILE328 ARG329 ASN330 LEU331 GLY332 ASN333 SER334 CYS335 TYR336 LEU337 ASN338 SER339 VAL340 VAL341 GLN342 VAL343 LEU344 PHE345 SER346 ILE347 PRO348 ASP349 PHE350 GLN351 ARG352 LYS353 TYR354 VAL355 ASP356 LYS357 LEU358 GLU359 LYS360 ILE361 PHE362 GLN363 ASN364 ALA365 PRO366 THR367 ASP368 PRO369 THR370 GLN371 ASP372 PHE373 SER374 THR375 GLN376 VAL377 ALA378 LYS379 LEU380 GLY381 HIS382 GLY383 LEU384 LEU385 SER386 GLY387 GLU388 GLY411 ILE412 ALA413 PRO414 ARG415 MET416 PHE417 LYS418 ALA419 LEU420 ILE421 GLY422 LYS423 GLY424 HIS425 PRO426 GLU427 PHE428 SER429 THR430 ASN431 ARG432 GLN433 GLN434 ASP435 ALA436 GLN437 GLU438 PHE439 PHE440 LEU441 HIS442 LEU443 ILE444 ASN445 MET446 VAL447 GLU448 ARG449 ASN450 CYS451 ARG452 SER453 SER454 GLU455 ASN456 PRO457 ASN458 GLU459 VAL460 PHE461 ARG462 PHE463 LEU464 VAL465 GLU466 GLU467 LYS468 ILE469 LYS470 CYS471 LEU472 ALA473 THR474 GLU475 LYS476 VAL477 LYS478 TYR479 THR480 GLN481 ARG482 VAL483 ASP484 TYR485 ILE486 MET487 GLN488 LEU489 PRO490 VAL491 PRO492 MET493 ASP494 ALA495 ALA496 LEU497 ASN498 LYS499 GLU500 GLU501 LEU502 LEU503 GLU504 TYR505 GLU506 GLU507 LYS508 LYS509 ARG510 GLN511 ALA512 GLU513 GLU514 GLU515 LYS516 MET517 ALA518 LEU519 PRO520 GLU521 LEU522 VAL523 ARG524 ALA525 GLN526 VAL527 PRO528 PHE529 SER530 SER531 CYS532 LEU533 GLU534 ALA535 TYR536 GLY537 ALA538 PRO539 GLU540 GLN541 VAL542 ASP543 ASP544 PHE545 TRP546 SER547 THR548 ALA549 LEU550 GLN551 ALA552 LYS553 SER554 VAL555 ALA556 VAL557 LYS558 THR559 THR560 ARG561 PHE562 ALA563 SER564 PHE565 PRO566 ASP567 TYR568 LEU569 VAL570 ILE571 GLN572 ILE573 LYS574 LYS575 PHE576 THR577 PHE578 GLY579 LEU580 ASP581 TRP582 VAL583 PRO584 LYS585 LYS586 LEU587 ASP588 VAL589 SER590 ILE591 GLU592 MET593 PRO594 GLU595 GLU596 LEU597 ASP598 ILE599 SER600 GLN601 LEU602 ARG603 GLY604 THR605 GLY606 LEU607 GLN608 PRO609 GLY610 GLU611 GLU612 GLU613 LEU614 PRO615 ASP616 ILE617 LEU632 ASP633 GLU634 SER635 VAL636 ILE637 ILE638 GLN639 LEU640 VAL641 GLU642 MET643 GLY644 PHE645 PRO646 MET647 ASP648 ALA649 CYS650 ARG651 LYS652 ALA653 VAL654 TYR655 TYR656 THR657 GLY658 ASN659 SER660 GLY661 ALA662 GLU663 ALA664 ALA665 MET666 ASN667 TRP668 VAL669 MET670 SER671 HIS672 MET673 ASP674 ASP675 PRO676 ASP677 PHE678 ALA679 ASN680 PRO681 LEU682 ILE683 LEU684 ASP698 PRO699 PRO700 PRO701 GLU702 ASP703 CYS704 VAL705 THR706 THR707 ILE708 VAL709 SER710 MET711 GLY712 PHE713 SER714 ARG715 ASP716 GLN717 ALA718 LEU719 LYS720 ALA721 LEU722 ARG723 ALA724 THR725 ASN726 ASN727 SER728 LEU729 GLU730 ARG731 ALA732 VAL733 ASP734 TRP735 ILE736 PHE737 SER738 HIS739 ILE740 ASP741 ASP742 LEU743 ASP744 ALA745 GLU746 ALA747 ALA748 MET749 ASP750 GLY768 PRO769 LYS770 VAL771 ARG772 ASP773 GLY774 PRO775 GLY776 LYS777 TYR778 GLN779 LEU780 PHE781 ALA782 PHE783 ILE784 SER785 HIS786 MET787 GLY788 THR789 SER790 THR791 MET792 CYS793 GLY794 HIS795 TYR796 VAL797 CYS798 HIS799 ILE800 LYS801 LYS802 GLU803 GLY804 ARG805 TRP806 VAL807 ILE808 TYR809 ASN810 ASP811 GLN812 LYS813 VAL814 CYS815 ALA816 SER817 GLU818 LYS819 PRO820 PRO821 LYS822 ASP823 LEU824 GLY825 TYR826 ILE827 TYR828 PHE829 TYR830 GLN831 ARG832 VAL833 ALA834 SER835
Unit 3 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75
Unit 4 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75
Ligands
Unit 5 ZN836
Unit 6 ZN836
Unit 7 NEH76
Unit 8 NEH76 CL77
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany