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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE FIRST PART OF THE MYCOBACTERIUM TUB DNA GYRASE REACTION CORE: THE BREAKAGE AND REUNION DOMAIN A RESOLUTION
Keywords DNA GYRASE, GYRA, BREAKAGE AND REUNION DOMAIN, TYPE II TOPOI TUBERCULOSIS, QUINOLONE BINDING SITE, DNA BINDING SITE, ANT RESISTANCE, ATP-BINDING, DNA-BINDING, ISOMERASE, NUCLEOTIDE TOPOISOMERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3IFZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA GYRASE SUBUNIT A  A 487 3834 0
2  Protein   DNA GYRASE SUBUNIT A  B 473 3700 0
3  Ligand   DNA GYRASE SUBUNIT A  A 2 0 9
4  Ligand   DNA GYRASE SUBUNIT A  B 2 0 9
5 Water     222 0 222
total       1186 7534 240
Proteins
Unit 1 ASP9 ASP10 SER11 LEU12 ASP13 ARG14 ILE15 GLU16 PRO17 VAL18 ASP19 ILE20 GLU21 GLN22 GLU23 MET24 GLN25 ARG26 SER27 TYR28 ILE29 ASP30 TYR31 ALA32 MET33 SER34 VAL35 ILE36 VAL37 GLY38 ARG39 ALA40 LEU41 PRO42 GLU43 VAL44 ARG45 ASP46 GLY47 LEU48 LYS49 PRO50 VAL51 HIS52 ARG53 ARG54 VAL55 LEU56 TYR57 ALA58 MET59 PHE60 ASP61 SER62 GLY63 PHE64 ARG65 PRO66 ASP67 ARG68 SER69 HIS70 ALA71 LYS72 SER73 ALA74 ARG75 SER76 VAL77 ALA78 GLU79 THR80 MET81 GLY82 ASN83 TYR84 HIS85 PRO86 HIS87 GLY88 ASP89 ALA90 SER91 ILE92 TYR93 ASP94 SER95 LEU96 VAL97 ARG98 MET99 ALA100 GLN101 PRO102 TRP103 SER104 LEU105 ARG106 TYR107 PRO108 LEU109 VAL110 ASP111 GLY112 GLN113 GLY114 ASN115 PHE116 GLY117 SER118 PRO119 GLY120 ASN121 ASP122 PRO123 PRO124 ALA125 ALA126 MET127 ARG128 TYR129 THR130 GLU131 ALA132 ARG133 LEU134 THR135 PRO136 LEU137 ALA138 MET139 GLU140 MET141 LEU142 ARG143 GLU144 ILE145 ASP146 GLU147 GLU148 THR149 VAL150 ASP151 PHE152 ILE153 PRO154 ASN155 TYR156 ASP157 GLY158 ARG159 VAL160 GLN161 GLU162 PRO163 THR164 VAL165 LEU166 PRO167 SER168 ARG169 PHE170 PRO171 ASN172 LEU173 LEU174 ALA175 ASN176 GLY177 SER178 GLY179 GLY180 ILE181 ALA182 VAL183 GLY184 MET185 ALA186 THR187 ASN188 ILE189 PRO190 PRO191 HIS192 ASN193 LEU194 ARG195 GLU196 LEU197 ALA198 ASP199 ALA200 VAL201 PHE202 TRP203 ALA204 LEU205 GLU206 ASN207 HIS208 ASP209 ALA210 ASP211 GLU212 GLU213 GLU214 THR215 LEU216 ALA217 ALA218 VAL219 MET220 GLY221 ARG222 VAL223 LYS224 GLY225 PRO226 ASP227 PHE228 PRO229 THR230 ALA231 GLY232 LEU233 ILE234 VAL235 GLY236 SER237 GLN238 GLY239 THR240 ALA241 ASP242 ALA243 TYR244 LYS245 THR246 GLY247 ARG248 GLY249 SER250 ILE251 ARG252 MET253 ARG254 GLY255 VAL256 VAL257 GLU258 VAL259 GLU260 GLU261 ASP262 SER263 ARG264 LEU269 VAL270 ILE271 THR272 GLU273 LEU274 PRO275 TYR276 GLN277 VAL278 ASN279 HIS280 ASP281 ASN282 PHE283 ILE284 THR285 SER286 ILE287 ALA288 GLU289 GLN290 VAL291 ARG292 ASP293 GLY294 LYS295 LEU296 ALA297 GLY298 ILE299 SER300 ASN301 ILE302 GLU303 ASP304 GLN305 SER306 SER307 ASP308 ARG309 VAL310 GLY311 LEU312 ARG313 ILE314 VAL315 ILE316 GLU317 ILE318 LYS319 ARG320 ASP321 ALA322 VAL323 ALA324 LYS325 VAL326 VAL327 ILE328 ASN329 ASN330 LEU331 TYR332 LYS333 HIS334 THR335 GLN336 LEU337 GLN338 THR339 SER340 PHE341 GLY342 ALA343 ASN344 MET345 LEU346 ALA347 ILE348 VAL349 ASP350 GLY351 VAL352 PRO353 ARG354 THR355 LEU356 ARG357 LEU358 ASP359 GLN360 LEU361 ILE362 ARG363 TYR364 TYR365 VAL366 ASP367 HIS368 GLN369 LEU370 ASP371 VAL372 ILE373 VAL374 ARG375 ARG376 THR377 THR378 TYR379 ARG380 LEU381 ARG382 LYS383 ALA384 ASN385 GLU386 ARG387 ALA388 HIS389 ILE390 LEU391 ARG392 GLY393 LEU394 VAL395 LYS396 ALA397 LEU398 ASP399 ALA400 LEU401 ASP402 GLU403 VAL404 ILE405 ALA406 LEU407 ILE408 ARG409 ALA410 SER411 GLU412 THR413 VAL414 ASP415 ILE416 ALA417 ARG418 ALA419 GLY420 LEU421 ILE422 GLU423 LEU424 LEU425 ASP426 ILE427 ASP428 GLU429 ILE430 GLN431 ALA432 GLN433 ALA434 ILE435 LEU436 ASP437 MET438 GLN439 LEU440 ARG441 ARG442 LEU443 ALA444 ALA445 LEU446 GLU447 ARG448 GLN449 ARG450 ILE451 ILE452 ASP453 ASP454 LEU455 ALA456 LYS457 ILE458 GLU459 ALA460 GLU461 ILE462 ALA463 ASP464 LEU465 GLU466 ASP467 ILE468 LEU469 ALA470 LYS471 PRO472 GLU473 ARG474 GLN475 ARG476 GLY477 ILE478 VAL479 ARG480 ASP481 GLU482 LEU483 ALA484 GLU485 ILE486 VAL487 ASP488 ARG489 HIS490 GLY491 ASP492 ASP493 ARG494 ARG495 THR496 ARG497 ILE498 ILE499
Unit 2 ILE29 ASP30 TYR31 ALA32 MET33 SER34 VAL35 ILE36 VAL37 GLY38 ARG39 ALA40 LEU41 PRO42 GLU43 VAL44 ARG45 ASP46 GLY47 LEU48 LYS49 PRO50 VAL51 HIS52 ARG53 ARG54 VAL55 LEU56 TYR57 ALA58 MET59 PHE60 ASP61 SER62 GLY63 PHE64 ARG65 PRO66 ASP67 ARG68 SER69 HIS70 ALA71 LYS72 SER73 ALA74 ARG75 SER76 VAL77 ALA78 GLU79 THR80 MET81 GLY82 ASN83 TYR84 HIS85 PRO86 HIS87 GLY88 ASP89 ALA90 SER91 ILE92 TYR93 ASP94 SER95 LEU96 VAL97 ARG98 MET99 ALA100 GLN101 PRO102 TRP103 SER104 LEU105 ARG106 TYR107 PRO108 LEU109 VAL110 ASP111 GLY112 GLN113 GLY114 ASN115 PHE116 GLY117 SER118 PRO119 GLY120 ASN121 ASP122 PRO123 PRO124 ALA125 ALA126 MET127 ARG128 TYR129 THR130 GLU131 ALA132 ARG133 LEU134 THR135 PRO136 LEU137 ALA138 MET139 GLU140 MET141 LEU142 ARG143 GLU144 ILE145 ASP146 GLU147 GLU148 THR149 VAL150 ASP151 PHE152 ILE153 PRO154 ASN155 TYR156 ASP157 GLY158 ARG159 VAL160 GLN161 GLU162 PRO163 THR164 VAL165 LEU166 PRO167 SER168 ARG169 PHE170 PRO171 ASN172 LEU173 LEU174 ALA175 ASN176 GLY177 SER178 GLY179 GLY180 ILE181 ALA182 VAL183 GLY184 MET185 ALA186 THR187 ASN188 ILE189 PRO190 PRO191 HIS192 ASN193 LEU194 ARG195 GLU196 LEU197 ALA198 ASP199 ALA200 VAL201 PHE202 TRP203 ALA204 LEU205 GLU206 ASN207 HIS208 ASP209 ALA210 ASP211 GLU212 GLU213 GLU214 THR215 LEU216 ALA217 ALA218 VAL219 MET220 GLY221 ARG222 VAL223 LYS224 GLY225 PRO226 ASP227 PHE228 PRO229 THR230 ALA231 GLY232 LEU233 ILE234 VAL235 GLY236 SER237 GLN238 GLY239 THR240 ALA241 ASP242 ALA243 TYR244 LYS245 THR246 GLY247 ARG248 GLY249 SER250 ILE251 ARG252 MET253 ARG254 GLY255 VAL256 VAL257 GLU258 VAL259 GLU260 GLU261 ASP262 SER263 ARG264 GLY265 ARG266 THR267 SER268 LEU269 VAL270 ILE271 THR272 GLU273 LEU274 PRO275 TYR276 GLN277 VAL278 ASN279 HIS280 ASP281 ASN282 PHE283 ILE284 THR285 SER286 ILE287 ALA288 GLU289 GLN290 VAL291 ARG292 ASP293 GLY294 LYS295 LEU296 ALA297 GLY298 ILE299 SER300 ASN301 ILE302 GLU303 ASP304 GLN305 SER306 SER307 ASP308 ARG309 VAL310 GLY311 LEU312 ARG313 ILE314 VAL315 ILE316 GLU317 ILE318 LYS319 ARG320 ASP321 ALA322 VAL323 ALA324 LYS325 VAL326 VAL327 ILE328 ASN329 ASN330 LEU331 TYR332 LYS333 HIS334 THR335 GLN336 LEU337 GLN338 THR339 SER340 PHE341 GLY342 ALA343 ASN344 MET345 LEU346 ALA347 ILE348 VAL349 ASP350 GLY351 VAL352 PRO353 ARG354 THR355 LEU356 ARG357 LEU358 ASP359 GLN360 LEU361 ILE362 ARG363 TYR364 TYR365 VAL366 ASP367 HIS368 GLN369 LEU370 ASP371 VAL372 ILE373 VAL374 ARG375 ARG376 THR377 THR378 TYR379 ARG380 LEU381 ARG382 LYS383 ALA384 ASN385 GLU386 ARG387 ALA388 HIS389 ILE390 LEU391 ARG392 GLY393 LEU394 VAL395 LYS396 ALA397 LEU398 ASP399 ALA400 LEU401 ASP402 GLU403 VAL404 ILE405 ALA406 LEU407 ILE408 ARG409 ALA410 SER411 GLU412 THR413 VAL414 ASP415 ILE416 ALA417 ARG418 ALA419 GLY420 LEU421 ILE422 GLU423 LEU424 LEU425 ASP426 ILE427 ASP428 GLU429 ILE430 GLN431 ALA432 GLN433 ALA434 ILE435 LEU436 ASP437 MET438 GLN439 LEU440 ARG441 ARG442 LEU443 ALA444 ALA445 LEU446 GLU447 ARG448 GLN449 ARG450 ILE451 ILE452 ASP453 ASP454 LEU455 ALA456 LYS457 ILE458 GLU459 ALA460 GLU461 ILE462 ALA463 ASP464 LEU465 GLU466 ASP467 ILE468 LEU469 ALA470 LYS471 PRO472 GLU473 ARG474 GLN475 ARG476 GLY477 ILE478 VAL479 ARG480 ASP481 GLU482 LEU483 ALA484 GLU485 ILE486 VAL487 ASP488 ARG489 HIS490 GLY491 ASP492 ASP493 ARG494 ARG495 THR496 ARG497 ILE498 ILE499 ALA500 ALA501
Ligands
Unit 3 MPD509 NA510
Unit 4 MPD509 NA510
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany