3I6D - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF PPO FROM BACILLUS SUBTILIS WITH AF
• Keywords: PROTEIN-INHIBITOR COMPLEX, FAD, FLAVOPROTEIN, OXIDOREDUCTASE PORPHYRIN BIOSYNTHESIS
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3I6D	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PROTOPORPHYRINOGEN OXIDASE	A	414	3162	0
2	Protein	PROTOPORPHYRINOGEN OXIDASE	B	419	3188	0
3	Ligand	PROTOPORPHYRINOGEN OXIDASE	A	3	0	82
4	Ligand	PROTOPORPHYRINOGEN OXIDASE	B	3	0	82
5	Water			11	0	11
total				850	6350	175

Proteins

Unit 1

LYS 5 LYS 6 HIS 7 VAL 8 VAL 9 ILE 10 ILE 11 GLY 12 GLY 13 GLY 14 ILE 15 THR 16 GLY 17 LEU 18 ALA 19 ALA 20 ALA 21 PHE 22 TYR 23 MET 24 GLU 25 LYS 26 GLU 27 ILE 28 LYS 29 GLU 30 LYS 31 ASN 32 LEU 33 PRO 34 LEU 35 GLU 36 LEU 37 THR 38 LEU 39 VAL 40 GLU 41 ALA 42 SER 43 PRO 44 ARG 45 VAL 46 GLY 47 GLY 48 LYS 49 ILE 50 GLN 51 THR 52 VAL 53 LYS 54 LYS 55 ASP 56 GLY 57 TYR 58 ILE 59 ILE 60 GLU 61 ARG 62 GLY 63 PRO 64 ASP 65 SER 66 PHE 67 LEU 68 GLU 69 ARG 70 LYS 71 LYS 72 SER 73 ALA 74 PRO 75 GLN 76 LEU 77 VAL 78 LYS 79 ASP 80 LEU 81 GLY 82 LEU 83 GLU 84 HIS 85 LEU 86 LEU 87 VAL 88 ASN 89 ASN 90 ALA 91 THR 92 GLY 93 GLN 94 SER 95 TYR 96 VAL 97 LEU 98 VAL 99 ASN 100 ARG 101 THR 102 LEU 103 HIS 104 PRO 105 MET 106 PRO 107 LYS 108 SER 130 GLY 131 LYS 132 ALA 133 ARG 134 ALA 135 ALA 136 MET 137 ASP 138 PHE 139 ILE 140 LEU 141 PRO 142 ALA 143 SER 144 LYS 145 THR 146 LYS 147 ASP 148 ASP 149 GLN 150 SER 151 LEU 152 GLY 153 GLU 154 PHE 155 PHE 156 ARG 157 ARG 158 ARG 159 VAL 160 GLY 161 ASP 162 GLU 163 VAL 164 VAL 165 GLU 166 ASN 167 LEU 168 ILE 169 GLU 170 PRO 171 LEU 172 LEU 173 SER 174 GLY 175 ILE 176 TYR 177 ALA 178 GLY 179 ASP 180 ILE 181 ASP 182 LYS 183 LEU 184 SER 185 LEU 186 MET 187 SER 188 THR 189 PHE 190 PRO 191 GLN 192 PHE 193 TYR 194 GLN 226 PHE 227 GLN 228 THR 229 LEU 230 SER 231 THR 232 GLY 233 LEU 234 GLN 235 THR 236 LEU 237 VAL 238 GLU 239 GLU 240 ILE 241 GLU 242 LYS 243 GLN 244 LEU 245 LYS 246 LEU 247 THR 248 LYS 249 VAL 250 TYR 251 LYS 252 GLY 253 THR 254 LYS 255 VAL 256 THR 257 LYS 258 LEU 259 SER 260 HIS 261 SER 262 GLY 263 SER 264 CYS 265 TYR 266 SER 267 LEU 268 GLU 269 LEU 270 ASP 271 ASN 272 GLY 273 VAL 274 THR 275 LEU 276 ASP 277 ALA 278 ASP 279 SER 280 VAL 281 ILE 282 VAL 283 THR 284 ALA 285 PRO 286 HIS 287 LYS 288 ALA 289 ALA 290 ALA 291 GLY 292 MET 293 LEU 294 SER 295 GLU 296 LEU 297 PRO 298 ALA 299 ILE 300 SER 301 HIS 302 LEU 303 LYS 304 ASN 305 MET 306 HIS 307 SER 308 THR 309 SER 310 VAL 311 ALA 312 ASN 313 VAL 314 ALA 315 LEU 316 GLY 317 PHE 318 PRO 319 GLU 320 GLY 321 SER 322 VAL 323 GLN 324 MET 325 GLU 326 HIS 327 GLU 328 GLY 329 THR 330 GLY 331 PHE 332 VAL 333 ILE 334 SER 335 ARG 336 ASN 337 SER 338 ASP 339 PHE 340 ALA 341 ILE 342 THR 343 ALA 344 CYS 345 THR 346 TRP 347 THR 348 ASN 349 LYS 350 LYS 351 TRP 352 PRO 353 HIS 354 ALA 355 ALA 356 PRO 357 GLU 358 GLY 359 LYS 360 THR 361 LEU 362 LEU 363 ARG 364 ALA 365 TYR 366 VAL 367 GLY 368 LYS 369 ALA 370 GLY 371 ASP 372 GLU 373 SER 374 ILE 375 VAL 376 ASP 377 LEU 378 SER 379 ASP 380 ASN 381 ASP 382 ILE 383 ILE 384 ASN 385 ILE 386 VAL 387 LEU 388 GLU 389 ASP 390 LEU 391 LYS 392 LYS 393 VAL 394 MET 395 ASN 396 ILE 397 ASN 398 GLY 399 GLU 400 PRO 401 GLU 402 MET 403 THR 404 CYS 405 VAL 406 THR 407 ARG 408 TRP 409 HIS 410 GLU 411 SER 412 MET 413 PRO 414 GLN 415 TYR 416 HIS 417 VAL 418 GLY 419 HIS 420 LYS 421 GLN 422 ARG 423 ILE 424 LYS 425 GLU 426 LEU 427 ARG 428 GLU 429 ALA 430 LEU 431 ALA 432 SER 433 ALA 434 TYR 435 PRO 436 GLY 437 VAL 438 TYR 439 MET 440 THR 441 GLY 442 ALA 443 SER 444 PHE 445 GLU 446 GLY 447 VAL 448 GLY 449 ILE 450 PRO 451 ASP 452 CYS 453 ILE 454 ASP 455 GLN 456 GLY 457 LYS 458 ALA 459 ALA 460 VAL 461 SER 462 ASP 463 ALA 464 LEU 465 THR 466 TYR 467 LEU 468 PHE 469 SER 470

Unit 2

LYS 5 LYS 6 HIS 7 VAL 8 VAL 9 ILE 10 ILE 11 GLY 12 GLY 13 GLY 14 ILE 15 THR 16 GLY 17 LEU 18 ALA 19 ALA 20 ALA 21 PHE 22 TYR 23 MET 24 GLU 25 LYS 26 GLU 27 ILE 28 LYS 29 GLU 30 LYS 31 ASN 32 LEU 33 PRO 34 LEU 35 GLU 36 LEU 37 THR 38 LEU 39 VAL 40 GLU 41 ALA 42 SER 43 PRO 44 ARG 45 VAL 46 GLY 47 GLY 48 LYS 49 ILE 50 GLN 51 THR 52 VAL 53 LYS 54 LYS 55 ASP 56 GLY 57 TYR 58 ILE 59 ILE 60 GLU 61 ARG 62 GLY 63 PRO 64 ASP 65 SER 66 PHE 67 LEU 68 GLU 69 ARG 70 LYS 71 LYS 72 SER 73 ALA 74 PRO 75 GLN 76 LEU 77 VAL 78 LYS 79 ASP 80 LEU 81 GLY 82 LEU 83 GLU 84 HIS 85 LEU 86 LEU 87 VAL 88 ASN 89 ASN 90 ALA 91 THR 92 GLY 93 GLN 94 SER 95 TYR 96 VAL 97 LEU 98 VAL 99 ASN 100 ARG 101 THR 102 LEU 103 HIS 104 PRO 105 MET 106 PRO 107 LYS 108 GLY 109 SER 130 GLY 131 LYS 132 ALA 133 ARG 134 ALA 135 ALA 136 MET 137 ASP 138 PHE 139 ILE 140 LEU 141 PRO 142 ALA 143 SER 144 LYS 145 THR 146 LYS 147 ASP 148 ASP 149 GLN 150 SER 151 LEU 152 GLY 153 GLU 154 PHE 155 PHE 156 ARG 157 ARG 158 ARG 159 VAL 160 GLY 161 ASP 162 GLU 163 VAL 164 VAL 165 GLU 166 ASN 167 LEU 168 ILE 169 GLU 170 PRO 171 LEU 172 LEU 173 SER 174 GLY 175 ILE 176 TYR 177 ALA 178 GLY 179 ASP 180 ILE 181 ASP 182 LYS 183 LEU 184 SER 185 LEU 186 MET 187 SER 188 THR 189 PHE 190 PRO 191 GLN 192 PHE 193 TYR 194 GLN 195 THR 196 GLN 224 GLY 225 GLN 226 PHE 227 GLN 228 THR 229 LEU 230 SER 231 THR 232 GLY 233 LEU 234 GLN 235 THR 236 LEU 237 VAL 238 GLU 239 GLU 240 ILE 241 GLU 242 LYS 243 GLN 244 LEU 245 LYS 246 LEU 247 THR 248 LYS 249 VAL 250 TYR 251 LYS 252 GLY 253 THR 254 LYS 255 VAL 256 THR 257 LYS 258 LEU 259 SER 260 HIS 261 SER 262 GLY 263 SER 264 CYS 265 TYR 266 SER 267 LEU 268 GLU 269 LEU 270 ASP 271 ASN 272 GLY 273 VAL 274 THR 275 LEU 276 ASP 277 ALA 278 ASP 279 SER 280 VAL 281 ILE 282 VAL 283 THR 284 ALA 285 PRO 286 HIS 287 LYS 288 ALA 289 ALA 290 ALA 291 GLY 292 MET 293 LEU 294 SER 295 GLU 296 LEU 297 PRO 298 ALA 299 ILE 300 SER 301 HIS 302 LEU 303 LYS 304 ASN 305 MET 306 HIS 307 SER 308 THR 309 SER 310 VAL 311 ALA 312 ASN 313 VAL 314 ALA 315 LEU 316 GLY 317 PHE 318 PRO 319 GLU 320 GLY 321 SER 322 VAL 323 GLN 324 MET 325 GLU 326 HIS 327 GLU 328 GLY 329 THR 330 GLY 331 PHE 332 VAL 333 ILE 334 SER 335 ARG 336 ASN 337 SER 338 ASP 339 PHE 340 ALA 341 ILE 342 THR 343 ALA 344 CYS 345 THR 346 TRP 347 THR 348 ASN 349 LYS 350 LYS 351 TRP 352 PRO 353 HIS 354 ALA 355 ALA 356 PRO 357 GLU 358 GLY 359 LYS 360 THR 361 LEU 362 LEU 363 ARG 364 ALA 365 TYR 366 VAL 367 GLY 368 LYS 369 ALA 370 GLY 371 ASP 372 GLU 373 SER 374 ILE 375 VAL 376 ASP 377 LEU 378 SER 379 ASP 380 ASN 381 ASP 382 ILE 383 ILE 384 ASN 385 ILE 386 VAL 387 LEU 388 GLU 389 ASP 390 LEU 391 LYS 392 LYS 393 VAL 394 MET 395 ASN 396 ILE 397 ASN 398 GLY 399 GLU 400 PRO 401 GLU 402 MET 403 THR 404 CYS 405 VAL 406 THR 407 ARG 408 TRP 409 HIS 410 GLU 411 SER 412 MET 413 PRO 414 GLN 415 TYR 416 HIS 417 VAL 418 GLY 419 HIS 420 LYS 421 GLN 422 ARG 423 ILE 424 LYS 425 GLU 426 LEU 427 ARG 428 GLU 429 ALA 430 LEU 431 ALA 432 SER 433 ALA 434 TYR 435 PRO 436 GLY 437 VAL 438 TYR 439 MET 440 THR 441 GLY 442 ALA 443 SER 444 PHE 445 GLU 446 GLY 447 VAL 448 GLY 449 ILE 450 PRO 451 ASP 452 CYS 453 ILE 454 ASP 455 GLN 456 GLY 457 LYS 458 ALA 459 ALA 460 VAL 461 SER 462 ASP 463 ALA 464 LEU 465 THR 466 TYR 467 LEU 468 PHE 469 SER 470

Ligands

Unit 3	ACJ 471 PO4 472 FAD 600
Unit 4	ACJ 471 PO4 472 FAD 700