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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF COVALENT UBIQUITIN-USP21 COMPLEX
Keywords UBIQUITIN-SPECIFIC PROTEASE ACTIVITY, HYDROLASE, UBIQUITIN B STRUCTURAL GENOMICS CONSORTIUM, SGC, ACTIVATOR, CHROMATIN R NUCLEUS, PROTEASE, THIOL PROTEASE, TRANSCRIPTION, TRANSCRIP REGULATION, UBL CONJUGATION PATHWAY, ISOPEPTIDE BOND, PHOSP
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3I3T     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21  A 303 2451 0
2  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21  C 310 2497 0
3  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21  E 310 2497 0
4  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21  G 304 2460 0
5  Protein   UBIQUITIN  B 75 597 0
6  Protein   UBIQUITIN  D 75 597 0
7  Protein   UBIQUITIN  F 75 597 0
8  Protein   UBIQUITIN  H 75 597 0
9  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21  A 1 0 1
10  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21  C 1 0 1
11  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21  E 1 0 1
12  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21  G 1 0 1
13  Ligand   UBIQUITIN  B 1 0 3
14  Ligand   UBIQUITIN  D 1 0 3
15  Ligand   UBIQUITIN  F 1 0 3
16  Ligand   UBIQUITIN  H 1 0 3
17 Water     121 0 121
total       1656 12293 137

Proteins
Unit 1 HIS211 VAL212 GLY213 LEU214 ARG215 ASN216 LEU217 GLY218 ASN219 THR220 CYS221 PHE222 LEU223 ASN224 ALA225 VAL226 LEU227 GLN228 CYS229 LEU230 SER231 SER232 THR233 ARG234 PRO235 LEU236 ARG237 ASP238 PHE239 CYS240 LEU241 ARG242 ARG243 ASP244 PHE245 ARG246 GLN247 GLU248 VAL249 GLN256 GLU257 LEU258 THR259 GLU260 ALA261 PHE262 ALA263 ASP264 VAL265 ILE266 GLY267 ALA268 LEU269 TRP270 HIS271 PRO272 ASP273 SER274 CYS275 GLU276 ALA277 VAL278 ASN279 PRO280 THR281 ARG282 PHE283 ARG284 ALA285 VAL286 PHE287 GLN288 LYS289 TYR290 VAL291 PRO292 SER293 PHE294 SER295 GLY296 TYR297 SER298 GLN299 GLN300 ASP301 ALA302 GLN303 GLU304 PHE305 LEU306 LYS307 LEU308 LEU309 MET310 GLU311 ARG312 LEU313 HIS314 LEU315 GLU316 ILE317 ASN318 ARG319 ARG320 LEU349 SER350 ASP351 ASP352 ASP353 ARG354 ALA355 ASN356 LEU357 MET358 TRP359 LYS360 ARG361 TYR362 LEU363 GLU364 ARG365 GLU366 ASP367 SER368 LYS369 ILE370 VAL371 ASP372 LEU373 PHE374 VAL375 GLY376 GLN377 LEU378 LYS379 SER380 CYS381 LEU382 LYS383 CYS384 GLN385 ALA386 CYS387 GLY388 TYR389 ARG390 SER391 THR392 THR393 PHE394 GLU395 VAL396 PHE397 CYS398 ASP399 LEU400 SER401 LEU402 PRO403 ILE404 PRO405 LYS406 VAL414 SER415 LEU416 ARG417 ASP418 CYS419 PHE420 ASN421 LEU422 PHE423 THR424 LYS425 GLU426 GLU427 GLU428 LEU429 GLU430 SER431 GLU432 ASN433 ALA434 PRO435 VAL436 CYS437 ASP438 ARG439 CYS440 ARG441 GLN442 LYS443 THR444 ARG445 SER446 THR447 LYS448 LYS449 LEU450 THR451 VAL452 GLN453 ARG454 PHE455 PRO456 ARG457 ILE458 LEU459 VAL460 LEU461 HIS462 LEU463 ASN464 ARG465 PHE466 SER467 ALA468 SER469 ARG470 GLY471 SER472 ILE473 LYS474 LYS475 SER476 SER477 VAL478 GLY479 VAL480 ASP481 PHE482 PRO483 LEU484 GLN485 ARG486 LEU487 SER488 LEU489 GLY490 ASP491 PHE492 ALA493 SER494 SER499 PRO500 VAL501 TYR502 GLN503 LEU504 TYR505 ALA506 LEU507 CYS508 ASN509 HIS510 SER511 GLY512 SER513 VAL514 HIS515 TYR516 GLY517 HIS518 TYR519 THR520 ALA521 LEU522 CYS523 ARG524 CYS525 GLN526 THR527 GLY528 TRP529 HIS530 VAL531 TYR532 ASN533 ASP534 SER535 ARG536 VAL537 SER538 PRO539 VAL540 SER541 GLU542 ASN543 GLN544 VAL545 ALA546 SER547 SER548 GLU549 GLY550 TYR551 VAL552 LEU553 PHE554 TYR555 GLN556 LEU557 MET558
Unit 2 HIS211 VAL212 GLY213 LEU214 ARG215 ASN216 LEU217 GLY218 ASN219 THR220 CYS221 PHE222 LEU223 ASN224 ALA225 VAL226 LEU227 GLN228 CYS229 LEU230 SER231 SER232 THR233 ARG234 PRO235 LEU236 ARG237 ASP238 PHE239 CYS240 LEU241 ARG242 ARG243 ASP244 PHE245 ARG246 GLN247 GLU248 VAL249 GLN256 GLU257 LEU258 THR259 GLU260 ALA261 PHE262 ALA263 ASP264 VAL265 ILE266 GLY267 ALA268 LEU269 TRP270 HIS271 PRO272 ASP273 SER274 CYS275 GLU276 ALA277 VAL278 ASN279 PRO280 THR281 ARG282 PHE283 ARG284 ALA285 VAL286 PHE287 GLN288 LYS289 TYR290 VAL291 PRO292 SER293 PHE294 SER295 GLY296 TYR297 SER298 GLN299 GLN300 ASP301 ALA302 GLN303 GLU304 PHE305 LEU306 LYS307 LEU308 LEU309 MET310 GLU311 ARG312 LEU313 HIS314 LEU315 GLU316 ILE317 ASN318 ARG319 ARG320 LEU349 SER350 ASP351 ASP352 ASP353 ARG354 ALA355 ASN356 LEU357 MET358 TRP359 LYS360 ARG361 TYR362 LEU363 GLU364 ARG365 GLU366 ASP367 SER368 LYS369 ILE370 VAL371 ASP372 LEU373 PHE374 VAL375 GLY376 GLN377 LEU378 LYS379 SER380 CYS381 LEU382 LYS383 CYS384 GLN385 ALA386 CYS387 GLY388 TYR389 ARG390 SER391 THR392 THR393 PHE394 GLU395 VAL396 PHE397 CYS398 ASP399 LEU400 SER401 LEU402 PRO403 ILE404 PRO405 LYS406 LYS407 GLY408 PHE409 ALA410 GLY411 GLY412 LYS413 VAL414 SER415 LEU416 ARG417 ASP418 CYS419 PHE420 ASN421 LEU422 PHE423 THR424 LYS425 GLU426 GLU427 GLU428 LEU429 GLU430 SER431 GLU432 ASN433 ALA434 PRO435 VAL436 CYS437 ASP438 ARG439 CYS440 ARG441 GLN442 LYS443 THR444 ARG445 SER446 THR447 LYS448 LYS449 LEU450 THR451 VAL452 GLN453 ARG454 PHE455 PRO456 ARG457 ILE458 LEU459 VAL460 LEU461 HIS462 LEU463 ASN464 ARG465 PHE466 SER467 ALA468 SER469 ARG470 GLY471 SER472 ILE473 LYS474 LYS475 SER476 SER477 VAL478 GLY479 VAL480 ASP481 PHE482 PRO483 LEU484 GLN485 ARG486 LEU487 SER488 LEU489 GLY490 ASP491 PHE492 ALA493 SER494 SER499 PRO500 VAL501 TYR502 GLN503 LEU504 TYR505 ALA506 LEU507 CYS508 ASN509 HIS510 SER511 GLY512 SER513 VAL514 HIS515 TYR516 GLY517 HIS518 TYR519 THR520 ALA521 LEU522 CYS523 ARG524 CYS525 GLN526 THR527 GLY528 TRP529 HIS530 VAL531 TYR532 ASN533 ASP534 SER535 ARG536 VAL537 SER538 PRO539 VAL540 SER541 GLU542 ASN543 GLN544 VAL545 ALA546 SER547 SER548 GLU549 GLY550 TYR551 VAL552 LEU553 PHE554 TYR555 GLN556 LEU557 MET558
Unit 3 HIS211 VAL212 GLY213 LEU214 ARG215 ASN216 LEU217 GLY218 ASN219 THR220 CYS221 PHE222 LEU223 ASN224 ALA225 VAL226 LEU227 GLN228 CYS229 LEU230 SER231 SER232 THR233 ARG234 PRO235 LEU236 ARG237 ASP238 PHE239 CYS240 LEU241 ARG242 ARG243 ASP244 PHE245 ARG246 GLN247 GLU248 VAL249 GLN256 GLU257 LEU258 THR259 GLU260 ALA261 PHE262 ALA263 ASP264 VAL265 ILE266 GLY267 ALA268 LEU269 TRP270 HIS271 PRO272 ASP273 SER274 CYS275 GLU276 ALA277 VAL278 ASN279 PRO280 THR281 ARG282 PHE283 ARG284 ALA285 VAL286 PHE287 GLN288 LYS289 TYR290 VAL291 PRO292 SER293 PHE294 SER295 GLY296 TYR297 SER298 GLN299 GLN300 ASP301 ALA302 GLN303 GLU304 PHE305 LEU306 LYS307 LEU308 LEU309 MET310 GLU311 ARG312 LEU313 HIS314 LEU315 GLU316 ILE317 ASN318 ARG319 ARG320 LEU349 SER350 ASP351 ASP352 ASP353 ARG354 ALA355 ASN356 LEU357 MET358 TRP359 LYS360 ARG361 TYR362 LEU363 GLU364 ARG365 GLU366 ASP367 SER368 LYS369 ILE370 VAL371 ASP372 LEU373 PHE374 VAL375 GLY376 GLN377 LEU378 LYS379 SER380 CYS381 LEU382 LYS383 CYS384 GLN385 ALA386 CYS387 GLY388 TYR389 ARG390 SER391 THR392 THR393 PHE394 GLU395 VAL396 PHE397 CYS398 ASP399 LEU400 SER401 LEU402 PRO403 ILE404 PRO405 LYS406 LYS407 GLY408 PHE409 ALA410 GLY411 GLY412 LYS413 VAL414 SER415 LEU416 ARG417 ASP418 CYS419 PHE420 ASN421 LEU422 PHE423 THR424 LYS425 GLU426 GLU427 GLU428 LEU429 GLU430 SER431 GLU432 ASN433 ALA434 PRO435 VAL436 CYS437 ASP438 ARG439 CYS440 ARG441 GLN442 LYS443 THR444 ARG445 SER446 THR447 LYS448 LYS449 LEU450 THR451 VAL452 GLN453 ARG454 PHE455 PRO456 ARG457 ILE458 LEU459 VAL460 LEU461 HIS462 LEU463 ASN464 ARG465 PHE466 SER467 ALA468 SER469 ARG470 GLY471 SER472 ILE473 LYS474 LYS475 SER476 SER477 VAL478 GLY479 VAL480 ASP481 PHE482 PRO483 LEU484 GLN485 ARG486 LEU487 SER488 LEU489 GLY490 ASP491 PHE492 ALA493 SER494 SER499 PRO500 VAL501 TYR502 GLN503 LEU504 TYR505 ALA506 LEU507 CYS508 ASN509 HIS510 SER511 GLY512 SER513 VAL514 HIS515 TYR516 GLY517 HIS518 TYR519 THR520 ALA521 LEU522 CYS523 ARG524 CYS525 GLN526 THR527 GLY528 TRP529 HIS530 VAL531 TYR532 ASN533 ASP534 SER535 ARG536 VAL537 SER538 PRO539 VAL540 SER541 GLU542 ASN543 GLN544 VAL545 ALA546 SER547 SER548 GLU549 GLY550 TYR551 VAL552 LEU553 PHE554 TYR555 GLN556 LEU557 MET558
Unit 4 HIS211 VAL212 GLY213 LEU214 ARG215 ASN216 LEU217 GLY218 ASN219 THR220 CYS221 PHE222 LEU223 ASN224 ALA225 VAL226 LEU227 GLN228 CYS229 LEU230 SER231 SER232 THR233 ARG234 PRO235 LEU236 ARG237 ASP238 PHE239 CYS240 LEU241 ARG242 ARG243 ASP244 PHE245 ARG246 GLN247 GLU248 VAL249 GLN256 GLU257 LEU258 THR259 GLU260 ALA261 PHE262 ALA263 ASP264 VAL265 ILE266 GLY267 ALA268 LEU269 TRP270 HIS271 PRO272 ASP273 SER274 CYS275 GLU276 ALA277 VAL278 ASN279 PRO280 THR281 ARG282 PHE283 ARG284 ALA285 VAL286 PHE287 GLN288 LYS289 TYR290 VAL291 PRO292 SER293 PHE294 SER295 GLY296 TYR297 SER298 GLN299 GLN300 ASP301 ALA302 GLN303 GLU304 PHE305 LEU306 LYS307 LEU308 LEU309 MET310 GLU311 ARG312 LEU313 HIS314 LEU315 GLU316 ILE317 ASN318 ARG319 ARG320 LEU349 SER350 ASP351 ASP352 ASP353 ARG354 ALA355 ASN356 LEU357 MET358 TRP359 LYS360 ARG361 TYR362 LEU363 GLU364 ARG365 GLU366 ASP367 SER368 LYS369 ILE370 VAL371 ASP372 LEU373 PHE374 VAL375 GLY376 GLN377 LEU378 LYS379 SER380 CYS381 LEU382 LYS383 CYS384 GLN385 ALA386 CYS387 GLY388 TYR389 ARG390 SER391 THR392 THR393 PHE394 GLU395 VAL396 PHE397 CYS398 ASP399 LEU400 SER401 LEU402 PRO403 ILE404 PRO405 LYS406 LYS407 VAL414 SER415 LEU416 ARG417 ASP418 CYS419 PHE420 ASN421 LEU422 PHE423 THR424 LYS425 GLU426 GLU427 GLU428 LEU429 GLU430 SER431 GLU432 ASN433 ALA434 PRO435 VAL436 CYS437 ASP438 ARG439 CYS440 ARG441 GLN442 LYS443 THR444 ARG445 SER446 THR447 LYS448 LYS449 LEU450 THR451 VAL452 GLN453 ARG454 PHE455 PRO456 ARG457 ILE458 LEU459 VAL460 LEU461 HIS462 LEU463 ASN464 ARG465 PHE466 SER467 ALA468 SER469 ARG470 GLY471 SER472 ILE473 LYS474 LYS475 SER476 SER477 VAL478 GLY479 VAL480 ASP481 PHE482 PRO483 LEU484 GLN485 ARG486 LEU487 SER488 LEU489 GLY490 ASP491 PHE492 ALA493 SER494 SER499 PRO500 VAL501 TYR502 GLN503 LEU504 TYR505 ALA506 LEU507 CYS508 ASN509 HIS510 SER511 GLY512 SER513 VAL514 HIS515 TYR516 GLY517 HIS518 TYR519 THR520 ALA521 LEU522 CYS523 ARG524 CYS525 GLN526 THR527 GLY528 TRP529 HIS530 VAL531 TYR532 ASN533 ASP534 SER535 ARG536 VAL537 SER538 PRO539 VAL540 SER541 GLU542 ASN543 GLN544 VAL545 ALA546 SER547 SER548 GLU549 GLY550 TYR551 VAL552 LEU553 PHE554 TYR555 GLN556 LEU557 MET558
Unit 5 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75
Unit 6 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75
Unit 7 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75
Unit 8 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75

Ligands
Unit 9 ZN700
Unit 10 ZN700
Unit 11 ZN700
Unit 12 ZN700
Unit 13 NEH76
Unit 14 NEH76
Unit 15 NEH76
Unit 16 NEH76

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany