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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF E. COLI PHOSPHATASE YRBI, WITH MG, TETR FORM
Keywords YRBI, KDSC, PHOSPHATASE, HYDROLASE, LIPOPOLYSACCHARIDE BIOSY MAGNESIUM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3HYC     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 181 1359 0
2  Protein    B 174 1308 0
3  Protein    C 181 1359 0
4  Protein    D 176 1322 0
5  Protein    E 181 1359 0
6  Protein    F 181 1359 0
7  Protein    G 181 1359 0
8  Protein    H 181 1359 0
9  Ligand    A 1 0 1
10  Ligand    B 1 0 1
11  Ligand    C 1 0 1
12  Ligand    D 1 0 1
13  Ligand    E 1 0 1
14  Ligand    F 1 0 1
15  Ligand    G 1 0 1
16  Ligand    H 1 0 1
17  Ligand    B 1 0 1
18  Ligand    D 1 0 1
19  Ligand    F 1 0 1
20  Ligand    G 1 0 1
21  Ligand    H 1 0 1
total       1449 10784 13
Proteins
Unit 1 LEU8 ALA9 THR10 CYS11 TYR12 GLY13 PRO14 VAL15 SER16 ALA17 ASP18 VAL19 MET20 ALA21 LYS22 ALA23 GLU24 ASN25 ILE26 ARG27 LEU28 LEU29 ILE30 LEU31 ASP32 VAL33 ASP34 GLY35 VAL36 LEU37 SER38 ASP39 GLY40 LEU41 ILE42 TYR43 MET44 GLY45 ASN46 ASN47 GLY48 GLU49 GLU50 LEU51 LYS52 ALA53 PHE54 ASN55 VAL56 ARG57 ASP58 GLY59 TYR60 GLY61 ILE62 ARG63 CYS64 ALA65 LEU66 THR67 SER68 ASP69 ILE70 GLU71 VAL72 ALA73 ILE74 ILE75 THR76 GLY77 ARG78 LYS79 ALA80 LYS81 LEU82 VAL83 GLU84 ASP85 ARG86 CYS87 ALA88 THR89 LEU90 GLY91 ILE92 THR93 HIS94 LEU95 TYR96 GLN97 GLY98 GLN99 SER100 ASN101 LYS102 LEU103 ILE104 ALA105 PHE106 SER107 ASP108 LEU109 LEU110 GLU111 LYS112 LEU113 ALA114 ILE115 ALA116 PRO117 GLU118 ASN119 VAL120 ALA121 TYR122 VAL123 GLY124 ASP125 ASP126 LEU127 ILE128 ASP129 TRP130 PRO131 VAL132 MET133 GLU134 LYS135 VAL136 GLY137 LEU138 SER139 VAL140 ALA141 VAL142 ALA143 ASP144 ALA145 HIS146 PRO147 LEU148 LEU149 ILE150 PRO151 ARG152 ALA153 ASP154 TYR155 VAL156 THR157 ARG158 ILE159 ALA160 GLY161 GLY162 ARG163 GLY164 ALA165 VAL166 ARG167 GLU168 VAL169 CYS170 ASP171 LEU172 LEU173 LEU174 LEU175 ALA176 GLN177 GLY178 LYS179 LEU180 ASP181 GLU182 ALA183 LYS184 GLY185 GLN186 SER187 ILE188
Unit 2 LEU8 ALA9 THR10 CYS11 TYR12 GLY13 PRO14 VAL15 SER16 ALA17 ASP18 VAL19 MET20 ALA21 LYS22 ALA23 GLU24 ASN25 ILE26 ARG27 LEU28 LEU29 ILE30 LEU31 ASP32 VAL33 ASP34 GLY35 VAL36 LEU37 SER38 ASP39 GLY40 LEU41 ILE42 TYR43 MET44 GLY45 ASN46 ASN47 GLY48 GLU49 GLU50 LEU51 LYS52 ALA53 PHE54 ASN55 VAL56 ARG57 ASP58 GLY59 TYR60 GLY61 ILE62 ARG63 CYS64 ALA65 LEU66 THR67 SER68 ASP69 ILE70 GLU71 VAL72 ALA73 ILE74 ILE75 THR76 GLY77 ARG78 LYS79 ALA80 LYS81 LEU82 VAL83 GLU84 ASP85 ARG86 CYS87 ALA88 THR89 LEU90 GLY91 ILE92 THR93 HIS94 LEU95 TYR96 GLN97 GLY98 GLN99 SER100 ASN101 LYS102 LEU103 ILE104 ALA105 PHE106 SER107 ASP108 LEU109 LEU110 GLU111 LYS112 LEU113 ALA114 ILE115 ALA116 PRO117 GLU118 ASN119 VAL120 ALA121 TYR122 VAL123 GLY124 ASP125 ASP126 LEU127 ILE128 ASP129 TRP130 PRO131 VAL132 MET133 GLU134 LYS135 VAL136 GLY137 LEU138 SER139 VAL140 ALA141 VAL142 ALA143 ASP144 ALA145 HIS146 PRO147 LEU148 LEU149 ILE150 PRO151 ARG152 ALA153 ASP154 TYR155 VAL156 THR157 ARG158 ILE159 ALA160 GLY161 GLY162 ARG163 GLY164 ALA165 VAL166 ARG167 GLU168 VAL169 CYS170 ASP171 LEU172 LEU173 LEU174 LEU175 ALA176 GLN177 GLY178 LYS179 LEU180 ASP181
Unit 3 LEU8 ALA9 THR10 CYS11 TYR12 GLY13 PRO14 VAL15 SER16 ALA17 ASP18 VAL19 MET20 ALA21 LYS22 ALA23 GLU24 ASN25 ILE26 ARG27 LEU28 LEU29 ILE30 LEU31 ASP32 VAL33 ASP34 GLY35 VAL36 LEU37 SER38 ASP39 GLY40 LEU41 ILE42 TYR43 MET44 GLY45 ASN46 ASN47 GLY48 GLU49 GLU50 LEU51 LYS52 ALA53 PHE54 ASN55 VAL56 ARG57 ASP58 GLY59 TYR60 GLY61 ILE62 ARG63 CYS64 ALA65 LEU66 THR67 SER68 ASP69 ILE70 GLU71 VAL72 ALA73 ILE74 ILE75 THR76 GLY77 ARG78 LYS79 ALA80 LYS81 LEU82 VAL83 GLU84 ASP85 ARG86 CYS87 ALA88 THR89 LEU90 GLY91 ILE92 THR93 HIS94 LEU95 TYR96 GLN97 GLY98 GLN99 SER100 ASN101 LYS102 LEU103 ILE104 ALA105 PHE106 SER107 ASP108 LEU109 LEU110 GLU111 LYS112 LEU113 ALA114 ILE115 ALA116 PRO117 GLU118 ASN119 VAL120 ALA121 TYR122 VAL123 GLY124 ASP125 ASP126 LEU127 ILE128 ASP129 TRP130 PRO131 VAL132 MET133 GLU134 LYS135 VAL136 GLY137 LEU138 SER139 VAL140 ALA141 VAL142 ALA143 ASP144 ALA145 HIS146 PRO147 LEU148 LEU149 ILE150 PRO151 ARG152 ALA153 ASP154 TYR155 VAL156 THR157 ARG158 ILE159 ALA160 GLY161 GLY162 ARG163 GLY164 ALA165 VAL166 ARG167 GLU168 VAL169 CYS170 ASP171 LEU172 LEU173 LEU174 LEU175 ALA176 GLN177 GLY178 LYS179 LEU180 ASP181 GLU182 ALA183 LYS184 GLY185 GLN186 SER187 ILE188
Unit 4 LEU8 ALA9 THR10 CYS11 TYR12 GLY13 PRO14 VAL15 SER16 ALA17 ASP18 VAL19 MET20 ALA21 LYS22 ALA23 GLU24 ASN25 ILE26 ARG27 LEU28 LEU29 ILE30 LEU31 ASP32 VAL33 ASP34 GLY35 VAL36 LEU37 SER38 ASP39 GLY40 LEU41 ILE42 TYR43 MET44 GLY45 ASN46 ASN47 GLY48 GLU49 GLU50 LEU51 LYS52 ALA53 PHE54 ASN55 VAL56 ARG57 ASP58 GLY59 TYR60 GLY61 ILE62 ARG63 CYS64 ALA65 LEU66 THR67 SER68 ASP69 ILE70 GLU71 VAL72 ALA73 ILE74 ILE75 THR76 GLY77 ARG78 LYS79 ALA80 LYS81 LEU82 VAL83 GLU84 ASP85 ARG86 CYS87 ALA88 THR89 LEU90 GLY91 ILE92 THR93 HIS94 LEU95 TYR96 GLN97 GLY98 GLN99 SER100 ASN101 LYS102 LEU103 ILE104 ALA105 PHE106 SER107 ASP108 LEU109 LEU110 GLU111 LYS112 LEU113 ALA114 ILE115 ALA116 PRO117 GLU118 ASN119 VAL120 ALA121 TYR122 VAL123 GLY124 ASP125 ASP126 LEU127 ILE128 ASP129 TRP130 PRO131 VAL132 MET133 GLU134 LYS135 VAL136 GLY137 LEU138 SER139 VAL140 ALA141 VAL142 ALA143 ASP144 ALA145 HIS146 PRO147 LEU148 LEU149 ILE150 PRO151 ARG152 ALA153 ASP154 TYR155 VAL156 THR157 ARG158 ILE159 ALA160 GLY161 GLY162 ARG163 GLY164 ALA165 VAL166 ARG167 GLU168 VAL169 CYS170 ASP171 LEU172 LEU173 LEU174 LEU175 ALA176 GLN177 GLY178 LYS179 LEU180 ASP181 GLU182 ALA183
Unit 5 LEU8 ALA9 THR10 CYS11 TYR12 GLY13 PRO14 VAL15 SER16 ALA17 ASP18 VAL19 MET20 ALA21 LYS22 ALA23 GLU24 ASN25 ILE26 ARG27 LEU28 LEU29 ILE30 LEU31 ASP32 VAL33 ASP34 GLY35 VAL36 LEU37 SER38 ASP39 GLY40 LEU41 ILE42 TYR43 MET44 GLY45 ASN46 ASN47 GLY48 GLU49 GLU50 LEU51 LYS52 ALA53 PHE54 ASN55 VAL56 ARG57 ASP58 GLY59 TYR60 GLY61 ILE62 ARG63 CYS64 ALA65 LEU66 THR67 SER68 ASP69 ILE70 GLU71 VAL72 ALA73 ILE74 ILE75 THR76 GLY77 ARG78 LYS79 ALA80 LYS81 LEU82 VAL83 GLU84 ASP85 ARG86 CYS87 ALA88 THR89 LEU90 GLY91 ILE92 THR93 HIS94 LEU95 TYR96 GLN97 GLY98 GLN99 SER100 ASN101 LYS102 LEU103 ILE104 ALA105 PHE106 SER107 ASP108 LEU109 LEU110 GLU111 LYS112 LEU113 ALA114 ILE115 ALA116 PRO117 GLU118 ASN119 VAL120 ALA121 TYR122 VAL123 GLY124 ASP125 ASP126 LEU127 ILE128 ASP129 TRP130 PRO131 VAL132 MET133 GLU134 LYS135 VAL136 GLY137 LEU138 SER139 VAL140 ALA141 VAL142 ALA143 ASP144 ALA145 HIS146 PRO147 LEU148 LEU149 ILE150 PRO151 ARG152 ALA153 ASP154 TYR155 VAL156 THR157 ARG158 ILE159 ALA160 GLY161 GLY162 ARG163 GLY164 ALA165 VAL166 ARG167 GLU168 VAL169 CYS170 ASP171 LEU172 LEU173 LEU174 LEU175 ALA176 GLN177 GLY178 LYS179 LEU180 ASP181 GLU182 ALA183 LYS184 GLY185 GLN186 SER187 ILE188
Unit 6 LEU8 ALA9 THR10 CYS11 TYR12 GLY13 PRO14 VAL15 SER16 ALA17 ASP18 VAL19 MET20 ALA21 LYS22 ALA23 GLU24 ASN25 ILE26 ARG27 LEU28 LEU29 ILE30 LEU31 ASP32 VAL33 ASP34 GLY35 VAL36 LEU37 SER38 ASP39 GLY40 LEU41 ILE42 TYR43 MET44 GLY45 ASN46 ASN47 GLY48 GLU49 GLU50 LEU51 LYS52 ALA53 PHE54 ASN55 VAL56 ARG57 ASP58 GLY59 TYR60 GLY61 ILE62 ARG63 CYS64 ALA65 LEU66 THR67 SER68 ASP69 ILE70 GLU71 VAL72 ALA73 ILE74 ILE75 THR76 GLY77 ARG78 LYS79 ALA80 LYS81 LEU82 VAL83 GLU84 ASP85 ARG86 CYS87 ALA88 THR89 LEU90 GLY91 ILE92 THR93 HIS94 LEU95 TYR96 GLN97 GLY98 GLN99 SER100 ASN101 LYS102 LEU103 ILE104 ALA105 PHE106 SER107 ASP108 LEU109 LEU110 GLU111 LYS112 LEU113 ALA114 ILE115 ALA116 PRO117 GLU118 ASN119 VAL120 ALA121 TYR122 VAL123 GLY124 ASP125 ASP126 LEU127 ILE128 ASP129 TRP130 PRO131 VAL132 MET133 GLU134 LYS135 VAL136 GLY137 LEU138 SER139 VAL140 ALA141 VAL142 ALA143 ASP144 ALA145 HIS146 PRO147 LEU148 LEU149 ILE150 PRO151 ARG152 ALA153 ASP154 TYR155 VAL156 THR157 ARG158 ILE159 ALA160 GLY161 GLY162 ARG163 GLY164 ALA165 VAL166 ARG167 GLU168 VAL169 CYS170 ASP171 LEU172 LEU173 LEU174 LEU175 ALA176 GLN177 GLY178 LYS179 LEU180 ASP181 GLU182 ALA183 LYS184 GLY185 GLN186 SER187 ILE188
Unit 7 LEU8 ALA9 THR10 CYS11 TYR12 GLY13 PRO14 VAL15 SER16 ALA17 ASP18 VAL19 MET20 ALA21 LYS22 ALA23 GLU24 ASN25 ILE26 ARG27 LEU28 LEU29 ILE30 LEU31 ASP32 VAL33 ASP34 GLY35 VAL36 LEU37 SER38 ASP39 GLY40 LEU41 ILE42 TYR43 MET44 GLY45 ASN46 ASN47 GLY48 GLU49 GLU50 LEU51 LYS52 ALA53 PHE54 ASN55 VAL56 ARG57 ASP58 GLY59 TYR60 GLY61 ILE62 ARG63 CYS64 ALA65 LEU66 THR67 SER68 ASP69 ILE70 GLU71 VAL72 ALA73 ILE74 ILE75 THR76 GLY77 ARG78 LYS79 ALA80 LYS81 LEU82 VAL83 GLU84 ASP85 ARG86 CYS87 ALA88 THR89 LEU90 GLY91 ILE92 THR93 HIS94 LEU95 TYR96 GLN97 GLY98 GLN99 SER100 ASN101 LYS102 LEU103 ILE104 ALA105 PHE106 SER107 ASP108 LEU109 LEU110 GLU111 LYS112 LEU113 ALA114 ILE115 ALA116 PRO117 GLU118 ASN119 VAL120 ALA121 TYR122 VAL123 GLY124 ASP125 ASP126 LEU127 ILE128 ASP129 TRP130 PRO131 VAL132 MET133 GLU134 LYS135 VAL136 GLY137 LEU138 SER139 VAL140 ALA141 VAL142 ALA143 ASP144 ALA145 HIS146 PRO147 LEU148 LEU149 ILE150 PRO151 ARG152 ALA153 ASP154 TYR155 VAL156 THR157 ARG158 ILE159 ALA160 GLY161 GLY162 ARG163 GLY164 ALA165 VAL166 ARG167 GLU168 VAL169 CYS170 ASP171 LEU172 LEU173 LEU174 LEU175 ALA176 GLN177 GLY178 LYS179 LEU180 ASP181 GLU182 ALA183 LYS184 GLY185 GLN186 SER187 ILE188
Unit 8 LEU8 ALA9 THR10 CYS11 TYR12 GLY13 PRO14 VAL15 SER16 ALA17 ASP18 VAL19 MET20 ALA21 LYS22 ALA23 GLU24 ASN25 ILE26 ARG27 LEU28 LEU29 ILE30 LEU31 ASP32 VAL33 ASP34 GLY35 VAL36 LEU37 SER38 ASP39 GLY40 LEU41 ILE42 TYR43 MET44 GLY45 ASN46 ASN47 GLY48 GLU49 GLU50 LEU51 LYS52 ALA53 PHE54 ASN55 VAL56 ARG57 ASP58 GLY59 TYR60 GLY61 ILE62 ARG63 CYS64 ALA65 LEU66 THR67 SER68 ASP69 ILE70 GLU71 VAL72 ALA73 ILE74 ILE75 THR76 GLY77 ARG78 LYS79 ALA80 LYS81 LEU82 VAL83 GLU84 ASP85 ARG86 CYS87 ALA88 THR89 LEU90 GLY91 ILE92 THR93 HIS94 LEU95 TYR96 GLN97 GLY98 GLN99 SER100 ASN101 LYS102 LEU103 ILE104 ALA105 PHE106 SER107 ASP108 LEU109 LEU110 GLU111 LYS112 LEU113 ALA114 ILE115 ALA116 PRO117 GLU118 ASN119 VAL120 ALA121 TYR122 VAL123 GLY124 ASP125 ASP126 LEU127 ILE128 ASP129 TRP130 PRO131 VAL132 MET133 GLU134 LYS135 VAL136 GLY137 LEU138 SER139 VAL140 ALA141 VAL142 ALA143 ASP144 ALA145 HIS146 PRO147 LEU148 LEU149 ILE150 PRO151 ARG152 ALA153 ASP154 TYR155 VAL156 THR157 ARG158 ILE159 ALA160 GLY161 GLY162 ARG163 GLY164 ALA165 VAL166 ARG167 GLU168 VAL169 CYS170 ASP171 LEU172 LEU173 LEU174 LEU175 ALA176 GLN177 GLY178 LYS179 LEU180 ASP181 GLU182 ALA183 LYS184 GLY185 GLN186 SER187 ILE188
Ligands
Unit 9 MG201
Unit 10 MG202
Unit 11 MG203
Unit 12 MG204
Unit 13 MG205
Unit 14 MG206
Unit 15 MG207
Unit 16 MG208
Unit 17 CL204
Unit 18 CL205
Unit 19 CL189
Unit 20 CL189
Unit 21 CL189
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany