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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SMALL RNA METHYLTRANSFERASE HEN1
Keywords HEN1, SMALL RNA METHYLTRANSFERASE, PROTEIN-RNA COMPLEX, SAM PROTEIN, TRANSFERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3HTX     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEN1  A 779 6093 0
2  RNA    B 22 464 0
3  RNA    C 22 470 0
4  Protein   HEN1  D 795 6217 0
5  RNA    E 22 464 0
6  RNA    F 22 470 0
7  Ligand   HEN1  A 2 0 27
8  Ligand   HEN1  D 2 0 27
9 Water     37 0 37
total       1703 14178 91
Proteins
Unit 1 HIS7 THR8 PRO9 THR10 PRO11 LYS12 ALA13 ILE14 ILE15 HIS16 GLN17 LYS18 PHE19 GLY20 ALA21 LYS22 ALA23 SER24 TYR25 THR26 VAL27 GLU28 GLU29 VAL30 HIS31 ASP32 SER33 SER34 GLN35 SER36 GLY37 CYS38 PRO39 GLY40 LEU41 ALA42 ILE43 PRO44 GLN45 LYS46 GLY47 PRO48 CYS49 LEU50 TYR51 ARG52 CYS53 HIS54 LEU55 GLN56 LEU57 PRO58 GLU59 PHE60 SER61 VAL62 VAL63 SER64 ASN65 VAL66 PHE67 LYS68 LYS69 LYS70 LYS71 ASP72 SER73 GLU74 GLN75 SER76 ALA77 ALA78 GLU79 LEU80 ALA81 LEU82 ASP83 LYS84 LEU85 GLY86 ILE87 ARG88 PRO89 GLN90 ASN91 ASP92 ASP93 LEU94 THR95 VAL96 ASP97 GLU98 ALA99 ARG100 ASP101 GLU102 ILE103 VAL104 GLY105 ARG106 ILE107 LYS108 TYR109 ILE110 PHE111 SER112 ASP113 GLU114 PHE115 LEU116 SER117 ALA118 GLU119 HIS120 PRO121 LEU122 GLY123 ALA124 HIS125 LEU126 ARG127 ALA128 ALA129 LEU130 ARG131 ARG132 ASP133 GLY134 GLU135 ARG136 CYS137 GLY138 SER139 VAL140 PRO141 VAL142 SER143 VAL144 ILE145 ALA146 THR147 VAL148 ASP149 ALA150 LYS151 ILE152 ASN153 SER154 ARG155 CYS156 LYS157 ILE158 ILE159 ASN160 PRO161 SER162 VAL163 GLU164 SER165 ASP166 PRO167 PHE168 LEU169 ALA170 ILE171 SER172 TYR173 VAL174 MET175 LYS176 ALA177 ALA178 ALA179 LYS180 LEU181 ALA182 ASP183 TYR184 ILE185 VAL186 ALA187 SER188 PRO189 HIS190 GLY191 LEU192 ARG193 ARG194 LYS195 ASN196 ALA197 TYR198 PRO199 SER200 GLU201 ILE202 VAL203 GLU204 ALA205 LEU206 ALA207 THR208 HIS209 VAL210 SER211 ASP212 SER216 ARG217 GLU218 VAL219 ALA220 ALA221 VAL222 TYR223 ILE224 PRO225 CYS226 ILE227 ASP228 GLU229 GLU230 VAL231 VAL232 GLU233 LEU234 ASP235 THR236 LEU237 TYR238 ILE239 SER240 SER241 ASN242 ARG243 HIS244 TYR245 LEU246 ASP247 SER248 ILE249 ALA250 GLU251 ARG252 LEU253 GLY254 LEU255 LYS256 ASP257 GLY258 ASN259 GLN260 VAL261 MET262 ILE263 SER264 ARG265 MET266 PHE267 GLY268 LYS269 ALA270 SER271 CYS272 GLY273 SER274 GLU275 CYS276 ARG277 LEU278 TYR279 SER280 GLU281 ILE282 PRO283 LYS284 LYS285 TYR286 LEU287 ASP288 ASN289 SER302 HIS303 ILE304 VAL305 LYS306 SER307 ARG308 ASN309 ALA310 ARG311 ALA312 SER313 TYR314 ILE315 CYS316 GLY317 GLN318 ASP319 ILE320 HIS321 GLY322 ASP323 ALA324 ILE325 LEU326 ALA327 SER328 VAL329 GLY330 TYR331 ARG332 TRP333 LYS334 SER335 ASP336 ASP337 LEU338 ASP339 TYR340 ASP341 ASP342 VAL343 THR344 VAL345 ASN346 SER347 PHE348 TYR349 ARG350 ILE351 CYS352 CYS353 GLY354 MET355 SER356 PRO357 ASN358 GLY359 ILE360 TYR361 LYS362 ILE363 SER364 ARG365 GLN366 ALA367 VAL368 ILE369 ALA370 ALA371 GLN372 LEU373 PRO374 PHE375 ALA376 PHE377 THR378 THR379 LYS380 SER381 ASN382 TRP383 ARG384 GLY385 PRO386 LEU387 PRO388 ARG389 GLU390 ILE391 LEU392 GLY393 LEU394 PHE395 CYS396 HIS397 GLN398 HIS399 ARG400 LEU401 ALA402 GLU403 PRO404 ILE405 LEU406 SER407 SER408 SER409 THR410 GLU455 VAL456 LYS457 ILE458 PHE459 THR460 LYS461 SER462 GLN463 ASP464 LEU465 VAL466 LEU467 GLU468 CYS469 SER470 PRO471 ARG472 LYS473 PHE474 TYR475 GLU476 LYS477 GLU478 ASN479 ASP480 ALA481 ILE482 GLN483 ASN484 ALA485 SER486 LEU487 LYS488 ALA489 LEU490 LEU491 TRP492 PHE493 SER494 LYS495 PHE496 PHE497 ALA498 ASP499 LEU500 SER535 SER536 GLU537 SER538 LYS539 ASN540 THR541 SER552 ILE553 THR554 ASN555 GLY556 SER557 VAL558 VAL559 SER560 ILE561 CYS562 TYR563 SER564 LEU565 SER566 LEU567 ALA568 VAL569 ASP570 PRO571 SER600 SER601 VAL602 GLU603 PRO604 ILE605 GLU606 SER607 ASN608 GLU609 GLU610 ILE611 GLU612 PHE613 GLU614 VAL615 GLY616 THR617 GLY618 SER619 MET620 ASN621 PRO622 HIS623 ILE624 GLU625 SER626 GLU627 VAL628 THR629 GLN630 MET631 THR632 VAL633 GLY634 GLU635 TYR636 ALA637 SER638 PHE639 LYS640 MET641 THR642 PRO643 PRO644 ASP645 ALA646 ALA647 GLU648 ALA649 LEU650 ILE651 LEU652 ALA653 VAL654 GLY655 SER656 ASP657 THR658 VAL659 ARG660 ILE661 ARG662 SER663 LEU664 LEU665 SER666 GLU667 ARG668 PRO669 CYS670 LEU671 ASN672 TYR673 ASN674 ILE675 LEU676 LEU677 LEU678 GLY679 VAL680 LYS681 GLY682 PRO683 SER684 GLU685 GLU686 ARG687 MET688 GLU689 ALA690 ALA691 PHE692 PHE693 LYS694 PRO695 PRO696 LEU697 SER698 LYS699 GLN700 ARG701 VAL702 GLU703 TYR704 ALA705 LEU706 LYS707 HIS708 ILE709 ARG710 GLU711 SER712 SER713 ALA714 SER715 THR716 LEU717 VAL718 ASP719 PHE720 GLY721 CYS722 GLY723 SER724 GLY725 SER726 LEU727 LEU728 ASP729 SER730 LEU731 LEU732 ASP733 TYR734 PRO735 THR736 SER737 LEU738 GLN739 THR740 ILE741 ILE742 GLY743 VAL744 ASP745 ILE746 SER747 PRO748 LYS749 GLY750 LEU751 ALA752 ARG753 ALA754 ALA755 LYS756 MET757 LEU758 HIS759 VAL760 LYS761 LEU762 ASN763 LYS764 GLU765 ALA766 CYS767 ASN768 VAL769 LYS770 SER771 ALA772 THR773 LEU774 TYR775 ASP776 GLY777 SER778 ILE779 LEU780 GLU781 PHE782 ASP783 SER784 ARG785 LEU786 HIS787 ASP788 VAL789 ASP790 ILE791 GLY792 THR793 CYS794 LEU795 GLU796 VAL797 ILE798 GLU799 HIS800 MET801 GLU802 GLU803 ASP804 GLN805 ALA806 CYS807 GLU808 PHE809 GLY810 GLU811 LYS812 VAL813 LEU814 SER815 LEU816 PHE817 HIS818 PRO819 LYS820 LEU821 LEU822 ILE823 VAL824 SER825 THR826 PRO827 ASN828 TYR829 GLU830 PHE831 ASN832 THR833 ILE834 LEU835 GLN836 ARG837 SER838 GLN851 LEU852 PRO853 LYS854 PHE855 ARG856 ASN857 HIS858 ASP859 HIS860 LYS861 PHE862 GLU863 TRP864 THR865 ARG866 GLU867 GLN868 PHE869 ASN870 GLN871 TRP872 ALA873 SER874 LYS875 LEU876 GLY877 LYS878 ARG879 HIS880 ASN881 TYR882 SER883 VAL884 GLU885 PHE886 SER887 GLY888 VAL889 GLY890 GLY891 SER892 GLY893 GLU894 VAL895 GLU896 PRO897 GLY898 PHE899 ALA900 SER901 GLN902 ILE903 ALA904 ILE905 PHE906 ARG907 ARG908 GLU909 ALA910 SER911 ALA917 GLU918 SER919 SER920 MET921 GLN922 PRO923 TYR924 LYS925 VAL926 ILE927 TRP928 GLU929 TRP930 LYS931 LYS932 GLU933
Unit 4 HIS7 THR8 PRO9 THR10 PRO11 LYS12 ALA13 ILE14 ILE15 HIS16 GLN17 LYS18 PHE19 GLY20 ALA21 LYS22 ALA23 SER24 TYR25 THR26 VAL27 GLU28 GLU29 VAL30 HIS31 ASP32 SER33 SER34 GLN35 SER36 GLY37 CYS38 PRO39 GLY40 LEU41 ALA42 ILE43 PRO44 GLN45 LYS46 GLY47 PRO48 CYS49 LEU50 TYR51 ARG52 CYS53 HIS54 LEU55 GLN56 LEU57 PRO58 GLU59 PHE60 SER61 VAL62 VAL63 SER64 ASN65 VAL66 PHE67 LYS68 LYS69 LYS70 LYS71 ASP72 SER73 GLU74 GLN75 SER76 ALA77 ALA78 GLU79 LEU80 ALA81 LEU82 ASP83 LYS84 LEU85 GLY86 ILE87 ARG88 PRO89 GLN90 ASN91 ASP92 ASP93 LEU94 THR95 VAL96 ASP97 GLU98 ALA99 ARG100 ASP101 GLU102 ILE103 VAL104 GLY105 ARG106 ILE107 LYS108 TYR109 ILE110 PHE111 SER112 ASP113 GLU114 PHE115 LEU116 SER117 ALA118 GLU119 HIS120 PRO121 LEU122 GLY123 ALA124 HIS125 LEU126 ARG127 ALA128 ALA129 LEU130 ARG131 ARG132 ASP133 GLY134 GLU135 ARG136 CYS137 GLY138 SER139 VAL140 PRO141 VAL142 SER143 VAL144 ILE145 ALA146 THR147 VAL148 ASP149 ALA150 LYS151 ILE152 ASN153 SER154 ARG155 CYS156 LYS157 ILE158 ILE159 ASN160 PRO161 SER162 VAL163 GLU164 SER165 ASP166 PRO167 PHE168 LEU169 ALA170 ILE171 SER172 TYR173 VAL174 MET175 LYS176 ALA177 ALA178 ALA179 LYS180 LEU181 ALA182 ASP183 TYR184 ILE185 VAL186 ALA187 SER188 PRO189 HIS190 GLY191 LEU192 ARG193 ARG194 LYS195 ASN196 ALA197 TYR198 PRO199 SER200 GLU201 ILE202 VAL203 GLU204 ALA205 LEU206 ALA207 THR208 HIS209 VAL210 SER211 ASP212 SER213 LEU214 HIS215 SER216 ARG217 GLU218 VAL219 ALA220 ALA221 VAL222 TYR223 ILE224 PRO225 CYS226 ILE227 ASP228 GLU229 GLU230 VAL231 VAL232 GLU233 LEU234 ASP235 THR236 LEU237 TYR238 ILE239 SER240 SER241 ASN242 ARG243 HIS244 TYR245 LEU246 ASP247 SER248 ILE249 ALA250 GLU251 ARG252 LEU253 GLY254 LEU255 LYS256 ASP257 GLY258 ASN259 GLN260 VAL261 MET262 ILE263 SER264 ARG265 MET266 PHE267 GLY268 LYS269 ALA270 SER271 CYS272 GLY273 SER274 GLU275 CYS276 ARG277 LEU278 TYR279 SER280 GLU281 ILE282 PRO283 LYS284 LYS285 TYR286 LEU287 ASP288 ASN289 SER290 SER291 ILE304 VAL305 LYS306 SER307 ARG308 ASN309 ALA310 ARG311 ALA312 SER313 TYR314 ILE315 CYS316 GLY317 GLN318 ASP319 ILE320 HIS321 GLY322 ASP323 ALA324 ILE325 LEU326 ALA327 SER328 VAL329 GLY330 TYR331 ARG332 TRP333 LYS334 SER335 ASP336 ASP337 LEU338 ASP339 TYR340 ASP341 ASP342 VAL343 THR344 VAL345 ASN346 SER347 PHE348 TYR349 ARG350 ILE351 CYS352 CYS353 GLY354 MET355 SER356 PRO357 ASN358 GLY359 ILE360 TYR361 LYS362 ILE363 SER364 ARG365 GLN366 ALA367 VAL368 ILE369 ALA370 ALA371 GLN372 LEU373 PRO374 PHE375 ALA376 PHE377 THR378 THR379 LYS380 SER381 ASN382 TRP383 ARG384 GLY385 PRO386 LEU387 PRO388 ARG389 GLU390 ILE391 LEU392 GLY393 LEU394 PHE395 CYS396 HIS397 GLN398 HIS399 ARG400 LEU401 ALA402 GLU403 PRO404 ILE405 LEU406 SER407 SER408 SER409 ARG453 CYS454 GLU455 VAL456 LYS457 ILE458 PHE459 THR460 LYS461 SER462 GLN463 ASP464 LEU465 VAL466 LEU467 GLU468 CYS469 SER470 PRO471 ARG472 LYS473 PHE474 TYR475 GLU476 LYS477 GLU478 ASN479 ASP480 ALA481 ILE482 GLN483 ASN484 ALA485 SER486 LEU487 LYS488 ALA489 LEU490 LEU491 TRP492 PHE493 SER494 LYS495 PHE496 PHE497 ALA498 ASP499 LEU500 SER520 PRO521 ASN522 VAL523 PHE524 ALA525 ALA526 PRO527 PRO528 SER535 SER536 GLU537 SER538 LYS539 GLU547 LYS548 ARG549 VAL550 GLN551 SER552 ILE553 THR554 ASN555 GLY556 SER557 VAL558 VAL559 SER560 ILE561 CYS562 TYR563 SER564 LEU565 SER566 LEU567 ALA568 VAL569 ASP570 PRO571 GLU572 TYR573 GLU599 SER600 SER601 VAL602 GLU603 PRO604 ILE605 GLU606 SER607 ASN608 GLU609 GLU610 ILE611 GLU612 PHE613 GLU614 VAL615 GLY616 THR617 GLY618 SER619 MET620 ASN621 PRO622 HIS623 ILE624 GLU625 SER626 GLU627 VAL628 THR629 GLN630 MET631 THR632 VAL633 GLY634 GLU635 TYR636 ALA637 SER638 PHE639 LYS640 MET641 THR642 PRO643 PRO644 ASP645 ALA646 ALA647 GLU648 ALA649 LEU650 ILE651 LEU652 ALA653 VAL654 GLY655 SER656 ASP657 THR658 VAL659 ARG660 ILE661 ARG662 SER663 LEU664 LEU665 SER666 GLU667 ARG668 PRO669 CYS670 LEU671 ASN672 TYR673 ASN674 ILE675 LEU676 LEU677 LEU678 GLY679 VAL680 LYS681 GLY682 PRO683 SER684 GLU685 GLU686 ARG687 MET688 GLU689 ALA690 ALA691 PHE692 PHE693 LYS694 PRO695 PRO696 LEU697 SER698 LYS699 GLN700 ARG701 VAL702 GLU703 TYR704 ALA705 LEU706 LYS707 HIS708 ILE709 ARG710 GLU711 SER712 SER713 ALA714 SER715 THR716 LEU717 VAL718 ASP719 PHE720 GLY721 CYS722 GLY723 SER724 GLY725 SER726 LEU727 LEU728 ASP729 SER730 LEU731 LEU732 ASP733 TYR734 PRO735 THR736 SER737 LEU738 GLN739 THR740 ILE741 ILE742 GLY743 VAL744 ASP745 ILE746 SER747 PRO748 LYS749 GLY750 LEU751 ALA752 ARG753 ALA754 ALA755 LYS756 MET757 LEU758 HIS759 VAL760 LYS761 LEU762 ASN763 LYS764 GLU765 ALA766 CYS767 ASN768 VAL769 LYS770 SER771 ALA772 THR773 LEU774 TYR775 ASP776 GLY777 SER778 ILE779 LEU780 GLU781 PHE782 ASP783 SER784 ARG785 LEU786 HIS787 ASP788 VAL789 ASP790 ILE791 GLY792 THR793 CYS794 LEU795 GLU796 VAL797 ILE798 GLU799 HIS800 MET801 GLU802 GLU803 ASP804 GLN805 ALA806 CYS807 GLU808 PHE809 GLY810 GLU811 LYS812 VAL813 LEU814 SER815 LEU816 PHE817 HIS818 PRO819 LYS820 LEU821 LEU822 ILE823 VAL824 SER825 THR826 PRO827 ASN828 TYR829 GLU830 PHE831 ASN832 THR833 ILE834 LEU835 GLN836 ARG837 SER838 THR839 LEU852 PRO853 LYS854 PHE855 ARG856 ASN857 HIS858 ASP859 HIS860 LYS861 PHE862 GLU863 TRP864 THR865 ARG866 GLU867 GLN868 PHE869 ASN870 GLN871 TRP872 ALA873 SER874 LYS875 LEU876 GLY877 LYS878 ARG879 HIS880 ASN881 TYR882 SER883 VAL884 GLU885 PHE886 SER887 GLY888 VAL889 GLY890 GLY891 SER892 GLY893 GLU894 VAL895 GLU896 PRO897 GLY898 PHE899 ALA900 SER901 GLN902 ILE903 ALA904 ILE905 PHE906 ARG907 ARG908 GLU909 GLU918 SER919 SER920 MET921 GLN922 PRO923 TYR924 LYS925 VAL926 ILE927 TRP928 GLU929 TRP930 LYS931 LYS932 GLU933
Nucleic acids
Unit 2 G1 A2 U3 U4 U5 C6 U7 C8 U9 C10 U11 G12 C13 A14 A15 G16 C17 G18 A19 A20 A21 G22
Unit 3 U1 U2 C3 G4 C5 U6 U7 G8 C9 A10 G11 A12 G13 A14 G15 A16 A17 A18 U19 C20 A21 C22
Unit 5 G1 A2 U3 U4 U5 C6 U7 C8 U9 C10 U11 G12 C13 A14 A15 G16 C17 G18 A19 A20 A21 G22
Unit 6 U1 U2 C3 G4 C5 U6 U7 G8 C9 A10 G11 A12 G13 A14 G15 A16 A17 A18 U19 C20 A21 C22
Ligands
Unit 7 MG950 SAH951
Unit 8 MG950 SAH951
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany