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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN CO AN RNA APTAMER
Keywords SM-LIKE MOTIF, PROTEIN-RNA COMPLEX, RNA-BINDING, STRESS RESP BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3HSB     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN HFQ  A 67 552 0
2  Protein   PROTEIN HFQ  B 69 568 0
3  Protein   PROTEIN HFQ  C 66 543 0
4  Protein   PROTEIN HFQ  D 67 552 0
5  Protein   PROTEIN HFQ  E 68 560 0
6  Protein   PROTEIN HFQ  F 67 552 0
7  RNA    X 7 154 0
8 Water     138 0 138
total       549 3481 138

Proteins
Unit 1 ASN5 ILE6 GLN7 ASP8 GLN9 PHE10 LEU11 ASN12 GLN13 ILE14 ARG15 LYS16 GLU17 ASN18 THR19 TYR20 VAL21 THR22 VAL23 PHE24 LEU25 LEU26 ASN27 GLY28 PHE29 GLN30 LEU31 ARG32 GLY33 GLN34 VAL35 LYS36 GLY37 PHE38 ASP39 ASN40 PHE41 THR42 VAL43 LEU44 LEU45 GLU46 SER47 GLU48 GLY49 LYS50 GLN51 GLN52 LEU53 ILE54 TYR55 LYS56 HIS57 ALA58 ILE59 SER60 THR61 PHE62 ALA63 PRO64 GLN65 LYS66 ASN67 VAL68 GLN69 LEU70 GLU71
Unit 2 ILE4 ASN5 ILE6 GLN7 ASP8 GLN9 PHE10 LEU11 ASN12 GLN13 ILE14 ARG15 LYS16 GLU17 ASN18 THR19 TYR20 VAL21 THR22 VAL23 PHE24 LEU25 LEU26 ASN27 GLY28 PHE29 GLN30 LEU31 ARG32 GLY33 GLN34 VAL35 LYS36 GLY37 PHE38 ASP39 ASN40 PHE41 THR42 VAL43 LEU44 LEU45 GLU46 SER47 GLU48 GLY49 LYS50 GLN51 GLN52 LEU53 ILE54 TYR55 LYS56 HIS57 ALA58 ILE59 SER60 THR61 PHE62 ALA63 PRO64 GLN65 LYS66 ASN67 VAL68 GLN69 LEU70 GLU71 LEU72
Unit 3 ASN5 ILE6 GLN7 ASP8 GLN9 PHE10 LEU11 ASN12 GLN13 ILE14 ARG15 LYS16 GLU17 ASN18 THR19 TYR20 VAL21 THR22 VAL23 PHE24 LEU25 LEU26 ASN27 GLY28 PHE29 GLN30 LEU31 ARG32 GLY33 GLN34 VAL35 LYS36 GLY37 PHE38 ASP39 ASN40 PHE41 THR42 VAL43 LEU44 LEU45 GLU46 SER47 GLU48 GLY49 LYS50 GLN51 GLN52 LEU53 ILE54 TYR55 LYS56 HIS57 ALA58 ILE59 SER60 THR61 PHE62 ALA63 PRO64 GLN65 LYS66 ASN67 VAL68 GLN69 LEU70
Unit 4 ASN5 ILE6 GLN7 ASP8 GLN9 PHE10 LEU11 ASN12 GLN13 ILE14 ARG15 LYS16 GLU17 ASN18 THR19 TYR20 VAL21 THR22 VAL23 PHE24 LEU25 LEU26 ASN27 GLY28 PHE29 GLN30 LEU31 ARG32 GLY33 GLN34 VAL35 LYS36 GLY37 PHE38 ASP39 ASN40 PHE41 THR42 VAL43 LEU44 LEU45 GLU46 SER47 GLU48 GLY49 LYS50 GLN51 GLN52 LEU53 ILE54 TYR55 LYS56 HIS57 ALA58 ILE59 SER60 THR61 PHE62 ALA63 PRO64 GLN65 LYS66 ASN67 VAL68 GLN69 LEU70 GLU71
Unit 5 ASN5 ILE6 GLN7 ASP8 GLN9 PHE10 LEU11 ASN12 GLN13 ILE14 ARG15 LYS16 GLU17 ASN18 THR19 TYR20 VAL21 THR22 VAL23 PHE24 LEU25 LEU26 ASN27 GLY28 PHE29 GLN30 LEU31 ARG32 GLY33 GLN34 VAL35 LYS36 GLY37 PHE38 ASP39 ASN40 PHE41 THR42 VAL43 LEU44 LEU45 GLU46 SER47 GLU48 GLY49 LYS50 GLN51 GLN52 LEU53 ILE54 TYR55 LYS56 HIS57 ALA58 ILE59 SER60 THR61 PHE62 ALA63 PRO64 GLN65 LYS66 ASN67 VAL68 GLN69 LEU70 GLU71 LEU72
Unit 6 ASN5 ILE6 GLN7 ASP8 GLN9 PHE10 LEU11 ASN12 GLN13 ILE14 ARG15 LYS16 GLU17 ASN18 THR19 TYR20 VAL21 THR22 VAL23 PHE24 LEU25 LEU26 ASN27 GLY28 PHE29 GLN30 LEU31 ARG32 GLY33 GLN34 VAL35 LYS36 GLY37 PHE38 ASP39 ASN40 PHE41 THR42 VAL43 LEU44 LEU45 GLU46 SER47 GLU48 GLY49 LYS50 GLN51 GLN52 LEU53 ILE54 TYR55 LYS56 HIS57 ALA58 ILE59 SER60 THR61 PHE62 ALA63 PRO64 GLN65 LYS66 ASN67 VAL68 GLN69 LEU70 GLU71

Nucleic acids
Unit 7 A1 G2 A3 G4 A5 G6 A7

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany