3HPH - Sequence, Chains, Asymmetric and Biological Units

• Title: CLOSED TETRAMER OF VISNA VIRUS INTEGRASE (RESIDUES 1-219) IN WITH LEDGF IBD
• Keywords: PROTEIN-PROTEIN COMPLEX, TETRAMER, DNA INTEGRATION, ENDONUCL MAGNESIUM, METAL-BINDING, MULTIFUNCTIONAL ENZYME, NUCLEASE, NUCLEOTIDYLTRANSFERASE, NUCLEUS, TRANSFERASE, VIRAL NUCLEOP VIRION, DNA-BINDING, HOST-VIRUS INTERACTION, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC BINDING, HHCC MOTIF, VIRAL P RECOMBINATION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3HPH	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	INTEGRASE	A	194	1539	0
2	Protein	INTEGRASE	B	200	1569	0
3	Protein	INTEGRASE	C	202	1583	0
4	Protein	INTEGRASE	D	196	1554	0
5	Protein	PC4 AND SFRS1-INTERACTING PROTEIN	E	89	730	0
6	Protein	PC4 AND SFRS1-INTERACTING PROTEIN	F	60	482	0
7	Protein	PC4 AND SFRS1-INTERACTING PROTEIN	G	54	429	0
8	Protein	PC4 AND SFRS1-INTERACTING PROTEIN	H	91	739	0
9	Ligand	INTEGRASE	A	3	0	13
10	Ligand	INTEGRASE	B	2	0	6
11	Ligand	INTEGRASE	C	2	0	7
12	Ligand	INTEGRASE	D	2	0	7
13	Ligand	PC4 AND SFRS1-INTERACTING PROTEIN	E	1	0	5
14	Ligand	PC4 AND SFRS1-INTERACTING PROTEIN	H	1	0	5
15	Water			110	0	110
total				1207	8625	153

Proteins

Unit 1	ASN 4 ILE 5 PRO 6 LEU 7 ALA 8 GLU 9 GLU 10 GLU 11 HIS 12 ASN 13 LYS 14 TRP 15 HIS 16 GLN 17 ASP 18 ALA 19 VAL 20 SER 21 LEU 22 HIS 23 LEU 24 GLU 25 PHE 26 GLY 27 ILE 28 PRO 29 ARG 30 THR 31 ALA 32 ALA 33 GLU 34 ASP 35 ILE 36 VAL 37 GLN 38 GLN 39 CYS 40 ASP 41 VAL 42 CYS 43 ILE 60 ASP 61 HIS 62 TRP 63 GLN 64 VAL 65 ASP 66 TYR 67 THR 68 HIS 69 TYR 70 GLU 71 ASP 72 LYS 73 ILE 74 ILE 75 LEU 76 VAL 77 TRP 78 VAL 79 GLU 80 THR 81 ASN 82 SER 83 GLY 84 LEU 85 ILE 86 TYR 87 ALA 88 GLU 89 ARG 90 VAL 91 LYS 92 GLY 93 GLU 94 THR 95 GLY 96 GLN 97 GLU 98 PHE 99 ARG 100 VAL 101 GLN 102 THR 103 MET 104 LYS 105 TRP 106 TYR 107 ALA 108 MET 109 PHE 110 ALA 111 PRO 112 LYS 113 SER 114 LEU 115 GLN 116 SER 117 ASP 118 ASN 119 GLY 120 PRO 121 ALA 122 PHE 123 VAL 124 ALA 125 GLU 126 SER 127 THR 128 GLN 129 LEU 130 LEU 131 MET 132 LYS 133 TYR 134 LEU 135 GLY 136 ILE 137 GLU 138 HIS 139 THR 140 THR 141 GLY 142 ILE 143 PRO 144 TRP 145 ASN 146 PRO 147 GLN 148 SER 149 GLN 150 ALA 151 LEU 152 VAL 153 GLU 154 ARG 155 THR 156 HIS 157 GLN 158 THR 159 LEU 160 LYS 161 ASN 162 THR 163 LEU 164 GLU 165 LYS 166 LEU 167 ILE 168 PRO 169 MET 170 PHE 171 ASN 172 ALA 173 PHE 174 GLU 175 SER 176 ALA 177 LEU 178 ALA 179 GLY 180 THR 181 LEU 182 ILE 183 THR 184 LEU 185 ASN 186 ILE 187 LYS 188 ARG 189 LYS 190 GLY 191 GLY 192 LEU 193 GLY 194 THR 195 SER 196 PRO 197 MET 198 ASP 199 ILE 200 PHE 201 ILE 202 PHE 203 ASN 204 LYS 205 GLU 206 GLN 207 GLN 208 ARG 209 ILE 210 GLN 211 GLN 212 GLN 213
Unit 2	MET 1 VAL 2 GLU 3 ASN 4 ILE 5 PRO 6 LEU 7 ALA 8 GLU 9 GLU 10 GLU 11 HIS 12 ASN 13 LYS 14 TRP 15 HIS 16 GLN 17 ASP 18 ALA 19 VAL 20 SER 21 LEU 22 HIS 23 LEU 24 GLU 25 PHE 26 GLY 27 ILE 28 PRO 29 ARG 30 THR 31 ALA 32 ALA 33 GLU 34 ASP 35 ILE 36 VAL 37 GLN 38 GLN 39 CYS 40 ASP 41 VAL 42 CYS 43 GLN 44 SER 55 ASN 56 LYS 57 ARG 58 GLY 59 ILE 60 ASP 61 HIS 62 TRP 63 GLN 64 VAL 65 ASP 66 TYR 67 THR 68 HIS 69 TYR 70 GLU 71 ASP 72 LYS 73 ILE 74 ILE 75 LEU 76 VAL 77 TRP 78 VAL 79 GLU 80 THR 81 ASN 82 SER 83 GLY 84 LEU 85 ILE 86 TYR 87 ALA 88 GLU 89 ARG 90 VAL 91 LYS 92 GLY 93 GLU 94 THR 95 GLY 96 GLN 97 GLU 98 PHE 99 ARG 100 VAL 101 GLN 102 THR 103 MET 104 LYS 105 TRP 106 TYR 107 ALA 108 MET 109 PHE 110 ALA 111 PRO 112 LYS 113 SER 114 LEU 115 GLN 116 SER 117 ASP 118 ASN 119 GLY 120 PRO 121 ALA 122 PHE 123 VAL 124 ALA 125 GLU 126 SER 127 THR 128 GLN 129 LEU 130 LEU 131 MET 132 LYS 133 TYR 134 LEU 135 GLY 136 ILE 137 GLU 138 HIS 139 THR 140 THR 141 GLY 142 GLN 148 SER 149 GLN 150 ALA 151 LEU 152 VAL 153 GLU 154 ARG 155 THR 156 HIS 157 GLN 158 THR 159 LEU 160 LYS 161 ASN 162 THR 163 LEU 164 GLU 165 LYS 166 LEU 167 ILE 168 PRO 169 MET 170 PHE 171 ASN 172 ALA 173 PHE 174 GLU 175 SER 176 ALA 177 LEU 178 ALA 179 GLY 180 THR 181 LEU 182 ILE 183 THR 184 LEU 185 ASN 186 ILE 187 LYS 188 ARG 189 LYS 190 GLY 191 GLY 192 LEU 193 GLY 194 THR 195 SER 196 PRO 197 MET 198 ASP 199 ILE 200 PHE 201 ILE 202 PHE 203 ASN 204 LYS 205 GLU 206 GLN 207 GLN 208 ARG 209 ILE 210 GLN 211 GLN 212 GLN 213 SER 214 LYS 215
Unit 3	MET 1 VAL 2 GLU 3 ASN 4 ILE 5 PRO 6 LEU 7 ALA 8 GLU 9 GLU 10 GLU 11 HIS 12 ASN 13 LYS 14 TRP 15 HIS 16 GLN 17 ASP 18 ALA 19 VAL 20 SER 21 LEU 22 HIS 23 LEU 24 GLU 25 PHE 26 GLY 27 ILE 28 PRO 29 ARG 30 THR 31 ALA 32 ALA 33 GLU 34 ASP 35 ILE 36 VAL 37 GLN 38 GLN 39 CYS 40 ASP 41 VAL 42 CYS 43 GLN 44 SER 55 ASN 56 LYS 57 ARG 58 GLY 59 ILE 60 ASP 61 HIS 62 TRP 63 GLN 64 VAL 65 ASP 66 TYR 67 THR 68 HIS 69 TYR 70 GLU 71 ASP 72 LYS 73 ILE 74 ILE 75 LEU 76 VAL 77 TRP 78 VAL 79 GLU 80 THR 81 ASN 82 SER 83 GLY 84 LEU 85 ILE 86 TYR 87 ALA 88 GLU 89 ARG 90 VAL 91 LYS 92 GLY 93 GLU 94 THR 95 GLY 96 GLN 97 GLU 98 PHE 99 ARG 100 VAL 101 GLN 102 THR 103 MET 104 LYS 105 TRP 106 TYR 107 ALA 108 MET 109 PHE 110 ALA 111 PRO 112 LYS 113 SER 114 LEU 115 GLN 116 SER 117 ASP 118 ASN 119 GLY 120 PRO 121 ALA 122 PHE 123 VAL 124 ALA 125 GLU 126 SER 127 THR 128 GLN 129 LEU 130 LEU 131 MET 132 LYS 133 TYR 134 LEU 135 GLY 136 ILE 137 GLU 138 HIS 139 THR 140 THR 141 GLY 142 ILE 143 GLN 148 SER 149 GLN 150 ALA 151 LEU 152 VAL 153 GLU 154 ARG 155 THR 156 HIS 157 GLN 158 THR 159 LEU 160 LYS 161 ASN 162 THR 163 LEU 164 GLU 165 LYS 166 LEU 167 ILE 168 PRO 169 MET 170 PHE 171 ASN 172 ALA 173 PHE 174 GLU 175 SER 176 ALA 177 LEU 178 ALA 179 GLY 180 THR 181 LEU 182 ILE 183 THR 184 LEU 185 ASN 186 ILE 187 LYS 188 ARG 189 LYS 190 GLY 191 GLY 192 LEU 193 GLY 194 THR 195 SER 196 PRO 197 MET 198 ASP 199 ILE 200 PHE 201 ILE 202 PHE 203 ASN 204 LYS 205 GLU 206 GLN 207 GLN 208 ARG 209 ILE 210 GLN 211 GLN 212 GLN 213 SER 214 LYS 215 SER 216
Unit 4	GLU 3 ASN 4 ILE 5 PRO 6 LEU 7 ALA 8 GLU 9 GLU 10 GLU 11 HIS 12 ASN 13 LYS 14 TRP 15 HIS 16 GLN 17 ASP 18 ALA 19 VAL 20 SER 21 LEU 22 HIS 23 LEU 24 GLU 25 PHE 26 GLY 27 ILE 28 PRO 29 ARG 30 THR 31 ALA 32 ALA 33 GLU 34 ASP 35 ILE 36 VAL 37 GLN 38 GLN 39 CYS 40 ASP 41 VAL 42 CYS 43 ILE 60 ASP 61 HIS 62 TRP 63 GLN 64 VAL 65 ASP 66 TYR 67 THR 68 HIS 69 TYR 70 GLU 71 ASP 72 LYS 73 ILE 74 ILE 75 LEU 76 VAL 77 TRP 78 VAL 79 GLU 80 THR 81 ASN 82 SER 83 GLY 84 LEU 85 ILE 86 TYR 87 ALA 88 GLU 89 ARG 90 VAL 91 LYS 92 GLY 93 GLU 94 THR 95 GLY 96 GLN 97 GLU 98 PHE 99 ARG 100 VAL 101 GLN 102 THR 103 MET 104 LYS 105 TRP 106 TYR 107 ALA 108 MET 109 PHE 110 ALA 111 PRO 112 LYS 113 SER 114 LEU 115 GLN 116 SER 117 ASP 118 ASN 119 GLY 120 PRO 121 ALA 122 PHE 123 VAL 124 ALA 125 GLU 126 SER 127 THR 128 GLN 129 LEU 130 LEU 131 MET 132 LYS 133 TYR 134 LEU 135 GLY 136 ILE 137 GLU 138 HIS 139 THR 140 THR 141 GLY 142 ILE 143 PRO 144 TRP 145 ASN 146 PRO 147 GLN 148 SER 149 GLN 150 ALA 151 LEU 152 VAL 153 GLU 154 ARG 155 THR 156 HIS 157 GLN 158 THR 159 LEU 160 LYS 161 ASN 162 THR 163 LEU 164 GLU 165 LYS 166 LEU 167 ILE 168 PRO 169 MET 170 PHE 171 ASN 172 ALA 173 PHE 174 GLU 175 SER 176 ALA 177 LEU 178 ALA 179 GLY 180 THR 181 LEU 182 ILE 183 THR 184 LEU 185 ASN 186 ILE 187 LYS 188 ARG 189 LYS 190 GLY 191 GLY 192 LEU 193 GLY 194 THR 195 SER 196 PRO 197 MET 198 ASP 199 ILE 200 PHE 201 ILE 202 PHE 203 ASN 204 LYS 205 GLU 206 GLN 207 GLN 208 ARG 209 ILE 210 GLN 211 GLN 212 GLN 213 SER 214
Unit 5	MET 348 ASP 349 SER 350 ARG 351 LEU 352 GLN 353 ARG 354 ILE 355 HIS 356 ALA 357 GLU 358 ILE 359 LYS 360 ASN 361 SER 362 LEU 363 LYS 364 ILE 365 ASP 366 ASN 367 LEU 368 ASP 369 VAL 370 ASN 371 ARG 372 CYS 373 ILE 374 GLU 375 ALA 376 LEU 377 ASP 378 GLU 379 LEU 380 ALA 381 SER 382 LEU 383 GLN 384 VAL 385 THR 386 MET 387 GLN 388 GLN 389 ALA 390 GLN 391 LYS 392 HIS 393 THR 394 GLU 395 MET 396 ILE 397 THR 398 THR 399 LEU 400 LYS 401 LYS 402 ILE 403 ARG 404 ARG 405 PHE 406 LYS 407 VAL 408 SER 409 GLN 410 VAL 411 ILE 412 MET 413 GLU 414 LYS 415 SER 416 THR 417 MET 418 LEU 419 TYR 420 ASN 421 LYS 422 PHE 423 LYS 424 ASN 425 MET 426 PHE 427 LEU 428 VAL 429 SER 434 VAL 435 LEU 436 GLU 437 VAL 438 LEU 439 PHE 440
Unit 6	LEU 352 GLN 353 ARG 354 ILE 355 HIS 356 ALA 357 GLU 358 ILE 359 LYS 360 ASN 361 SER 362 LEU 363 LYS 364 ILE 365 ASP 366 ASN 367 LEU 368 ASP 369 VAL 370 ASN 371 ARG 372 CYS 373 ILE 374 GLU 375 ALA 376 LEU 377 ASP 378 GLU 379 LEU 380 MET 396 ILE 397 THR 398 THR 399 LEU 400 LYS 401 LYS 402 ILE 403 ARG 404 ARG 405 PHE 406 LYS 407 VAL 408 SER 409 GLN 410 VAL 411 ILE 412 MET 413 GLU 414 LYS 415 SER 416 THR 417 MET 418 LEU 419 TYR 420 ASN 421 LYS 422 PHE 423 LYS 424 ASN 425 MET 426
Unit 7	GLN 353 ARG 354 ILE 355 HIS 356 ALA 357 GLU 358 ILE 359 LYS 360 ASN 361 SER 362 LEU 363 LYS 364 ILE 365 ASP 366 ASN 367 LEU 368 ASP 369 VAL 370 ASN 371 ARG 372 CYS 373 ILE 374 GLU 375 ALA 376 LEU 377 ASP 378 GLU 379 LEU 380 ALA 381 MET 396 ILE 397 THR 398 THR 399 LEU 400 LYS 401 LYS 402 ILE 403 ARG 404 ARG 405 PHE 406 LYS 407 VAL 408 SER 409 GLN 410 VAL 411 ILE 412 MET 413 GLU 414 LYS 415 SER 416 THR 417 MET 418 LEU 419 TYR 420
Unit 8	MET 348 ASP 349 SER 350 ARG 351 LEU 352 GLN 353 ARG 354 ILE 355 HIS 356 ALA 357 GLU 358 ILE 359 LYS 360 ASN 361 SER 362 LEU 363 LYS 364 ILE 365 ASP 366 ASN 367 LEU 368 ASP 369 VAL 370 ASN 371 ARG 372 CYS 373 ILE 374 GLU 375 ALA 376 LEU 377 ASP 378 GLU 379 LEU 380 ALA 381 SER 382 LEU 383 GLN 384 VAL 385 THR 386 MET 387 GLN 388 GLN 389 ALA 390 GLN 391 LYS 392 HIS 393 THR 394 GLU 395 MET 396 ILE 397 THR 398 THR 399 LEU 400 LYS 401 LYS 402 ILE 403 ARG 404 ARG 405 PHE 406 LYS 407 VAL 408 SER 409 GLN 410 VAL 411 ILE 412 MET 413 GLU 414 LYS 415 SER 416 THR 417 MET 418 LEU 419 TYR 420 ASN 421 LYS 422 PHE 423 LYS 424 ASN 425 MET 426 PHE 427 LEU 428 VAL 429 GLY 430 GLU 431 SER 434 VAL 435 LEU 436 GLU 437 VAL 438 LEU 439 PHE 440

Ligands

Unit 9	ZN 220 GOL 221 GOL 222
Unit 10	ZN 220 PO4 221
Unit 11	ZN 220 GOL 221
Unit 12	ZN 220 GOL 221
Unit 13	PO4 1
Unit 14	PO4 2