Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title VISNA VIRUS INTEGRASE (RESIDUES 1-219) IN COMPLEX WITH LEDGF IBD: EXAMPLES OF OPEN INTEGRASE DIMER-DIMER INTERFACES
Keywords PROTEIN-PROTEIN COMPLEX, TETRAMER, DNA INTEGRATION, ENDONUCLEASE, MAGNESIUM, METAL-BINDING, MULTIFUNCTIONAL ENZYME, NUCLEASE, NUCLEOTIDYLTRANSFERASE, NUCLEUS, TRANSFERASE, VIRAL NUCLEOPROTEIN, VIRION, ZINC, DNA- BINDING, HOST-VIRUS INTERACTION, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC BINDING, HHCC MOTIF, VIRAL PROTEIN, RECOMBINATION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3HPG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INTEGRASE  A 194 1529 0
2  Protein   INTEGRASE  B 209 1644 0
3  Protein   INTEGRASE  C 198 1562 0
4  Protein   INTEGRASE  D 196 1545 0
5  Protein   INTEGRASE  E 193 1528 0
6  Protein   INTEGRASE  F 203 1590 0
7  Protein   PC4 AND SFRS1-INTERACTING PROTEIN  G 73 604 0
8  Protein   PC4 AND SFRS1-INTERACTING PROTEIN  H 68 553 0
9  Protein   PC4 AND SFRS1-INTERACTING PROTEIN  I 68 551 0
10  Protein   PC4 AND SFRS1-INTERACTING PROTEIN  J 77 629 0
11  Protein   PC4 AND SFRS1-INTERACTING PROTEIN  K 67 551 0
12  Protein   PC4 AND SFRS1-INTERACTING PROTEIN  L 61 500 0
13  Ligand   INTEGRASE  A 1 0 1
14  Ligand   INTEGRASE  B 1 0 1
15  Ligand   INTEGRASE  C 1 0 1
16  Ligand   INTEGRASE  D 1 0 1
17  Ligand   INTEGRASE  E 1 0 1
18  Ligand   INTEGRASE  F 1 0 1
total       1613 12786 6
Proteins
Unit 1 ASN4 ILE5 PRO6 LEU7 ALA8 GLU9 GLU10 GLU11 HIS12 ASN13 LYS14 TRP15 HIS16 GLN17 ASP18 ALA19 VAL20 SER21 LEU22 HIS23 LEU24 GLU25 PHE26 GLY27 ILE28 PRO29 ARG30 THR31 ALA32 ALA33 GLU34 ASP35 ILE36 VAL37 GLN38 GLN39 CYS40 ASP41 VAL42 CYS43 GLN44 GLU45 ASN46 LYS47 MET48 GLY59 ILE60 ASP61 HIS62 TRP63 GLN64 VAL65 ASP66 TYR67 THR68 HIS69 TYR70 GLU71 ASP72 LYS73 ILE74 ILE75 LEU76 VAL77 TRP78 VAL79 GLU80 THR81 ASN82 SER83 GLY84 LEU85 ILE86 TYR87 ALA88 GLU89 ARG90 VAL91 LYS92 GLY93 GLU94 THR95 GLY96 GLN97 GLU98 PHE99 ARG100 VAL101 GLN102 THR103 MET104 LYS105 TRP106 TYR107 ALA108 MET109 PHE110 ALA111 PRO112 LYS113 SER114 LEU115 GLN116 SER117 ASP118 ASN119 GLY120 PRO121 ALA122 PHE123 VAL124 ALA125 GLU126 SER127 THR128 GLN129 LEU130 LEU131 MET132 LYS133 TYR134 LEU135 GLY136 ILE137 GLU138 HIS139 THR140 THR141 PRO147 GLN148 SER149 GLN150 ALA151 LEU152 VAL153 GLU154 ARG155 THR156 HIS157 GLN158 THR159 LEU160 LYS161 ASN162 THR163 LEU164 GLU165 LYS166 LEU167 ILE168 PRO169 MET170 PHE171 ASN172 ALA173 PHE174 GLU175 SER176 ALA177 LEU178 ALA179 GLY180 THR181 LEU182 ILE183 THR184 LEU185 ASN186 ILE187 LYS188 ARG189 LYS190 GLY191 GLY192 LEU193 GLY194 THR195 SER196 PRO197 MET198 ASP199 ILE200 PHE201 ILE202 PHE203 ASN204 LYS205 GLU206 GLN207 GLN208 ARG209 ILE210 GLN211 GLN212
Unit 2 ASN4 ILE5 PRO6 LEU7 ALA8 GLU9 GLU10 GLU11 HIS12 ASN13 LYS14 TRP15 HIS16 GLN17 ASP18 ALA19 VAL20 SER21 LEU22 HIS23 LEU24 GLU25 PHE26 GLY27 ILE28 PRO29 ARG30 THR31 ALA32 ALA33 GLU34 ASP35 ILE36 VAL37 GLN38 GLN39 CYS40 ASP41 VAL42 CYS43 GLN44 GLU45 ASN46 LYS47 MET48 PRO49 SER50 THR51 LEU52 ARG53 GLY54 SER55 ASN56 LYS57 ARG58 GLY59 ILE60 ASP61 HIS62 TRP63 GLN64 VAL65 ASP66 TYR67 THR68 HIS69 TYR70 GLU71 ASP72 LYS73 ILE74 ILE75 LEU76 VAL77 TRP78 VAL79 GLU80 THR81 ASN82 SER83 GLY84 LEU85 ILE86 TYR87 ALA88 GLU89 ARG90 VAL91 LYS92 GLY93 GLU94 THR95 GLY96 GLN97 GLU98 PHE99 ARG100 VAL101 GLN102 THR103 MET104 LYS105 TRP106 TYR107 ALA108 MET109 PHE110 ALA111 PRO112 LYS113 SER114 LEU115 GLN116 SER117 ASP118 ASN119 GLY120 PRO121 ALA122 PHE123 VAL124 ALA125 GLU126 SER127 THR128 GLN129 LEU130 LEU131 MET132 LYS133 TYR134 LEU135 GLY136 ILE137 GLU138 HIS139 THR140 THR141 GLY142 ILE143 PRO144 TRP145 ASN146 PRO147 GLN148 SER149 GLN150 ALA151 LEU152 VAL153 GLU154 ARG155 THR156 HIS157 GLN158 THR159 LEU160 LYS161 ASN162 THR163 LEU164 GLU165 LYS166 LEU167 ILE168 PRO169 MET170 PHE171 ASN172 ALA173 PHE174 GLU175 SER176 ALA177 LEU178 ALA179 GLY180 THR181 LEU182 ILE183 THR184 LEU185 ASN186 ILE187 LYS188 ARG189 LYS190 GLY191 GLY192 LEU193 GLY194 THR195 SER196 PRO197 MET198 ASP199 ILE200 PHE201 ILE202 PHE203 ASN204 LYS205 GLU206 GLN207 GLN208 ARG209 ILE210 GLN211 GLN212
Unit 3 ASN4 ILE5 PRO6 LEU7 ALA8 GLU9 GLU10 GLU11 HIS12 ASN13 LYS14 TRP15 HIS16 GLN17 ASP18 ALA19 VAL20 SER21 LEU22 HIS23 LEU24 GLU25 PHE26 GLY27 ILE28 PRO29 ARG30 THR31 ALA32 ALA33 GLU34 ASP35 ILE36 VAL37 GLN38 GLN39 CYS40 ASP41 VAL42 CYS43 GLN44 GLU45 ASN46 LYS47 MET48 ILE60 ASP61 HIS62 TRP63 GLN64 VAL65 ASP66 TYR67 THR68 HIS69 TYR70 GLU71 ASP72 LYS73 ILE74 ILE75 LEU76 VAL77 TRP78 VAL79 GLU80 THR81 ASN82 SER83 GLY84 LEU85 ILE86 TYR87 ALA88 GLU89 ARG90 VAL91 LYS92 GLY93 GLU94 THR95 GLY96 GLN97 GLU98 PHE99 ARG100 VAL101 GLN102 THR103 MET104 LYS105 TRP106 TYR107 ALA108 MET109 PHE110 ALA111 PRO112 LYS113 SER114 LEU115 GLN116 SER117 ASP118 ASN119 GLY120 PRO121 ALA122 PHE123 VAL124 ALA125 GLU126 SER127 THR128 GLN129 LEU130 LEU131 MET132 LYS133 TYR134 LEU135 GLY136 ILE137 GLU138 HIS139 THR140 THR141 GLY142 ILE143 PRO144 TRP145 ASN146 PRO147 GLN148 SER149 GLN150 ALA151 LEU152 VAL153 GLU154 ARG155 THR156 HIS157 GLN158 THR159 LEU160 LYS161 ASN162 THR163 LEU164 GLU165 LYS166 LEU167 ILE168 PRO169 MET170 PHE171 ASN172 ALA173 PHE174 GLU175 SER176 ALA177 LEU178 ALA179 GLY180 THR181 LEU182 ILE183 THR184 LEU185 ASN186 ILE187 LYS188 ARG189 LYS190 GLY191 GLY192 LEU193 GLY194 THR195 SER196 PRO197 MET198 ASP199 ILE200 PHE201 ILE202 PHE203 ASN204 LYS205 GLU206 GLN207 GLN208 ARG209 ILE210 GLN211 GLN212
Unit 4 VAL2 GLU3 ASN4 ILE5 PRO6 LEU7 ALA8 GLU9 GLU10 GLU11 HIS12 ASN13 LYS14 TRP15 HIS16 GLN17 ASP18 ALA19 VAL20 SER21 LEU22 HIS23 LEU24 GLU25 PHE26 GLY27 ILE28 PRO29 ARG30 THR31 ALA32 ALA33 GLU34 ASP35 ILE36 VAL37 GLN38 GLN39 CYS40 ASP41 VAL42 CYS43 GLN44 GLU45 ASN46 LYS47 MET48 PRO49 ASP61 HIS62 TRP63 GLN64 VAL65 ASP66 TYR67 THR68 HIS69 TYR70 GLU71 ASP72 LYS73 ILE74 ILE75 LEU76 VAL77 TRP78 VAL79 GLU80 THR81 ASN82 SER83 GLY84 LEU85 ILE86 TYR87 ALA88 GLU89 ARG90 VAL91 LYS92 GLY93 GLU94 THR95 GLY96 GLN97 GLU98 PHE99 ARG100 VAL101 GLN102 THR103 MET104 LYS105 TRP106 TYR107 ALA108 MET109 PHE110 ALA111 PRO112 LYS113 SER114 LEU115 GLN116 SER117 ASP118 ASN119 GLY120 PRO121 ALA122 PHE123 VAL124 ALA125 GLU126 SER127 THR128 GLN129 LEU130 LEU131 MET132 LYS133 TYR134 LEU135 GLY136 ILE137 GLU138 HIS139 THR140 THR141 ASN146 PRO147 GLN148 SER149 GLN150 ALA151 LEU152 VAL153 GLU154 ARG155 THR156 HIS157 GLN158 THR159 LEU160 LYS161 ASN162 THR163 LEU164 GLU165 LYS166 LEU167 ILE168 PRO169 MET170 PHE171 ASN172 ALA173 PHE174 GLU175 SER176 ALA177 LEU178 ALA179 GLY180 THR181 LEU182 ILE183 THR184 LEU185 ASN186 ILE187 LYS188 ARG189 LYS190 GLY191 GLY192 LEU193 GLY194 THR195 SER196 PRO197 MET198 ASP199 ILE200 PHE201 ILE202 PHE203 ASN204 LYS205 GLU206 GLN207 GLN208 ARG209 ILE210 GLN211 GLN212
Unit 5 VAL2 GLU3 ASN4 ILE5 PRO6 LEU7 ALA8 GLU9 GLU10 GLU11 HIS12 ASN13 LYS14 TRP15 HIS16 GLN17 ASP18 ALA19 VAL20 SER21 LEU22 HIS23 LEU24 GLU25 PHE26 GLY27 ILE28 PRO29 ARG30 THR31 ALA32 ALA33 GLU34 ASP35 ILE36 VAL37 GLN38 GLN39 CYS40 ASP41 VAL42 CYS43 GLN44 GLU45 ASN46 LYS47 MET48 PRO49 GLY59 ILE60 ASP61 HIS62 TRP63 GLN64 VAL65 ASP66 TYR67 THR68 HIS69 TYR70 GLU71 ASP72 LYS73 ILE74 ILE75 LEU76 VAL77 TRP78 VAL79 GLU80 THR81 ASN82 SER83 GLY84 LEU85 ILE86 TYR87 ALA88 GLU89 ARG90 VAL91 LYS92 GLY93 GLU94 THR95 GLY96 GLN97 GLU98 PHE99 ARG100 VAL101 GLN102 THR103 MET104 LYS105 TRP106 TYR107 ALA108 MET109 PHE110 ALA111 PRO112 LYS113 SER114 LEU115 GLN116 SER117 ASP118 ASN119 GLY120 PRO121 ALA122 PHE123 VAL124 ALA125 GLU126 SER127 THR128 GLN129 LEU130 LEU131 MET132 LYS133 TYR134 LEU135 GLY136 ILE137 GLU138 HIS139 THR140 THR141 ALA151 LEU152 VAL153 GLU154 ARG155 THR156 HIS157 GLN158 THR159 LEU160 LYS161 ASN162 THR163 LEU164 GLU165 LYS166 LEU167 ILE168 PRO169 MET170 PHE171 ASN172 ALA173 PHE174 GLU175 SER176 ALA177 LEU178 ALA179 GLY180 THR181 LEU182 ILE183 THR184 LEU185 ASN186 ILE187 LYS188 ARG189 LYS190 GLY191 GLY192 LEU193 GLY194 THR195 SER196 PRO197 MET198 ASP199 ILE200 PHE201 ILE202 PHE203 ASN204 LYS205 GLU206 GLN207 GLN208 ARG209 ILE210 GLN211 GLN212
Unit 6 VAL2 GLU3 ASN4 ILE5 PRO6 LEU7 ALA8 GLU9 GLU10 GLU11 HIS12 ASN13 LYS14 TRP15 HIS16 GLN17 ASP18 ALA19 VAL20 SER21 LEU22 HIS23 LEU24 GLU25 PHE26 GLY27 ILE28 PRO29 ARG30 THR31 ALA32 ALA33 GLU34 ASP35 ILE36 VAL37 GLN38 GLN39 CYS40 ASP41 VAL42 CYS43 GLN44 GLU45 ASN46 LYS47 MET48 PRO49 ARG58 GLY59 ILE60 ASP61 HIS62 TRP63 GLN64 VAL65 ASP66 TYR67 THR68 HIS69 TYR70 GLU71 ASP72 LYS73 ILE74 ILE75 LEU76 VAL77 TRP78 VAL79 GLU80 THR81 ASN82 SER83 GLY84 LEU85 ILE86 TYR87 ALA88 GLU89 ARG90 VAL91 LYS92 GLY93 GLU94 THR95 GLY96 GLN97 GLU98 PHE99 ARG100 VAL101 GLN102 THR103 MET104 LYS105 TRP106 TYR107 ALA108 MET109 PHE110 ALA111 PRO112 LYS113 SER114 LEU115 GLN116 SER117 ASP118 ASN119 GLY120 PRO121 ALA122 PHE123 VAL124 ALA125 GLU126 SER127 THR128 GLN129 LEU130 LEU131 MET132 LYS133 TYR134 LEU135 GLY136 ILE137 GLU138 HIS139 THR140 THR141 GLY142 ILE143 PRO144 TRP145 ASN146 PRO147 GLN148 SER149 GLN150 ALA151 LEU152 VAL153 GLU154 ARG155 THR156 HIS157 GLN158 THR159 LEU160 LYS161 ASN162 THR163 LEU164 GLU165 LYS166 LEU167 ILE168 PRO169 MET170 PHE171 ASN172 ALA173 PHE174 GLU175 SER176 ALA177 LEU178 ALA179 GLY180 THR181 LEU182 ILE183 THR184 LEU185 ASN186 ILE187 LYS188 ARG189 LYS190 GLY191 GLY192 LEU193 GLY194 THR195 SER196 PRO197 MET198 ASP199 ILE200 PHE201 ILE202 PHE203 ASN204 LYS205 GLU206 GLN207 GLN208 ARG209 ILE210 GLN211 GLN212
Unit 7 MET348 ASP349 SER350 ARG351 LEU352 GLN353 ARG354 ILE355 HIS356 ALA357 GLU358 ILE359 LYS360 ASN361 SER362 LEU363 LYS364 ILE365 ASP366 ASN367 LEU368 ASP369 VAL370 ASN371 ARG372 CYS373 ILE374 GLU375 ALA376 LEU377 ASP378 GLU379 LEU380 GLN384 VAL385 THR386 MET387 GLN388 GLN389 ALA390 GLN391 LYS392 HIS393 THR394 GLU395 MET396 ILE397 THR398 THR399 LEU400 LYS401 LYS402 ILE403 ARG404 ARG405 PHE406 LYS407 VAL408 SER409 GLN410 VAL411 ILE412 MET413 GLU414 LYS415 SER416 THR417 MET418 LEU419 TYR420 ASN421 LYS422 PHE423
Unit 8 SER347 MET348 ASP349 SER350 ARG351 LEU352 GLN353 ARG354 ILE355 HIS356 ALA357 GLU358 ILE359 LYS360 ASN361 SER362 LEU363 LYS364 ILE365 ASP366 ASN367 LEU368 ASP369 VAL370 ASN371 ARG372 CYS373 ILE374 GLU375 ALA376 LEU377 ASP378 GLU379 LEU380 VAL385 THR386 MET387 GLN388 GLN389 ALA390 GLN391 LYS392 HIS393 THR394 GLU395 MET396 ILE397 THR398 THR399 LEU400 LYS401 LYS402 ILE403 ARG404 ARG405 PHE406 LYS407 VAL408 SER409 GLN410 VAL411 ILE412 MET413 GLU414 LYS415 SER416 THR417 MET418
Unit 9 MET348 ASP349 SER350 ARG351 LEU352 GLN353 ARG354 ILE355 HIS356 ALA357 GLU358 ILE359 LYS360 ASN361 SER362 LEU363 LYS364 ILE365 ASP366 ASN367 LEU368 ASP369 VAL370 ASN371 ARG372 CYS373 ILE374 GLU375 ALA376 LEU377 ASP378 GLU379 LEU380 ALA381 SER382 THR386 MET387 GLN388 GLN389 ALA390 GLN391 LYS392 HIS393 THR394 GLU395 MET396 ILE397 THR398 THR399 LEU400 LYS401 LYS402 ILE403 ARG404 ARG405 PHE406 LYS407 VAL408 SER409 GLN410 VAL411 ILE412 MET413 GLU414 LYS415 SER416 THR417 MET418
Unit 10 SER347 MET348 ASP349 SER350 ARG351 LEU352 GLN353 ARG354 ILE355 HIS356 ALA357 GLU358 ILE359 LYS360 ASN361 SER362 LEU363 LYS364 ILE365 ASP366 ASN367 LEU368 ASP369 VAL370 ASN371 ARG372 CYS373 ILE374 GLU375 ALA376 LEU377 ASP378 GLU379 LEU380 ALA381 SER382 LEU383 GLN384 VAL385 THR386 MET387 GLN388 GLN389 ALA390 GLN391 LYS392 HIS393 THR394 GLU395 MET396 ILE397 THR398 THR399 LEU400 LYS401 LYS402 ILE403 ARG404 ARG405 PHE406 LYS407 VAL408 SER409 GLN410 VAL411 ILE412 MET413 GLU414 LYS415 SER416 THR417 MET418 LEU419 TYR420 ASN421 LYS422 PHE423
Unit 11 SER347 MET348 ASP349 SER350 ARG351 LEU352 GLN353 ARG354 ILE355 HIS356 ALA357 GLU358 ILE359 LYS360 ASN361 SER362 LEU363 LYS364 ILE365 ASP366 ASN367 LEU368 ASP369 VAL370 ASN371 ARG372 CYS373 ILE374 GLU375 ALA376 LEU377 ASP378 GLU379 LEU380 ALA381 GLU395 MET396 ILE397 THR398 THR399 LEU400 LYS401 LYS402 ILE403 ARG404 ARG405 PHE406 LYS407 VAL408 SER409 GLN410 VAL411 ILE412 MET413 GLU414 LYS415 SER416 THR417 MET418 LEU419 TYR420 ASN421 LYS422 PHE423 LYS424 ASN425 MET426
Unit 12 MET348 ASP349 SER350 ARG351 LEU352 GLN353 ARG354 ILE355 HIS356 ALA357 GLU358 ILE359 LYS360 ASN361 SER362 LEU363 LYS364 ILE365 ASP366 ASN367 LEU368 ASP369 VAL370 ASN371 ARG372 CYS373 ILE374 GLU375 ALA376 LEU377 ASP378 GLU379 VAL385 THR386 MET387 GLN388 GLN389 ALA390 GLN391 LYS392 HIS393 THR394 GLU395 MET396 ILE397 THR398 THR399 LEU400 LYS401 LYS402 ILE403 ARG404 ARG405 PHE406 LYS407 VAL408 SER409 GLN410 VAL411 ILE412 MET413
Ligands
Unit 13 ZN220
Unit 14 ZN220
Unit 15 ZN220
Unit 16 ZN220
Unit 17 ZN220
Unit 18 ZN220
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany