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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN RIBONUCLEOTIDE REDUCTASE 1 BOUND EFFECTOR TTP AND SUBSTRATE GDP
Keywords OXIDOREDUCTASE, RIBONUCLEOTIDE REDUCTASE, ALLOSTERIC ENZYME, BINDING, DNA REPLICATION, NUCLEOTIDE-BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3HND     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 729 5720 0
2  Protein    B 735 5677 0
3  Ligand    A 6 0 73
4  Ligand    B 4 0 63
5 Water     32 0 32
total       1506 11397 168
Proteins
Unit 1 MET14 PHE15 ASP16 LYS17 ILE18 THR19 SER20 ARG21 ILE22 GLN23 LYS24 LEU25 CYS26 TYR27 GLY28 LEU29 ASN30 MET31 ASP32 PHE33 VAL34 ASP35 PRO36 ALA37 GLN38 ILE39 THR40 MET41 LYS42 VAL43 ILE44 GLN45 GLY46 LEU47 TYR48 SER49 GLY50 VAL51 THR52 THR53 VAL54 GLU55 LEU56 ASP57 THR58 LEU59 ALA60 ALA61 GLU62 THR63 ALA64 ALA65 THR66 LEU67 THR68 THR69 LYS70 HIS71 PRO72 ASP73 TYR74 ALA75 ILE76 LEU77 ALA78 ALA79 ARG80 ILE81 ALA82 VAL83 SER84 ASN85 LEU86 HIS87 LYS88 GLU89 THR90 LYS91 LYS92 VAL93 PHE94 SER95 ASP96 VAL97 MET98 GLU99 ASP100 LEU101 TYR102 ASN103 TYR104 ILE105 ASN106 PRO107 HIS108 ASN109 GLY110 LYS111 HIS112 SER113 PRO114 MET115 VAL116 ALA117 LYS118 SER119 THR120 LEU121 ASP122 ILE123 VAL124 LEU125 ALA126 ASN127 LYS128 ASP129 ARG130 LEU131 ASN132 SER133 ALA134 ILE135 ILE136 TYR137 ASP138 ARG139 ASP140 PHE141 SER142 TYR143 ASN144 TYR145 PHE146 GLY147 PHE148 LYS149 THR150 LEU151 GLU152 ARG153 SER154 TYR155 LEU156 LEU157 LYS158 ILE159 ASN160 GLY161 LYS162 VAL163 ALA164 GLU165 ARG166 PRO167 GLN168 HIS169 MET170 LEU171 MET172 ARG173 VAL174 SER175 VAL176 GLY177 ILE178 HIS179 LYS180 GLU181 ASP182 ILE183 ASP184 ALA185 ALA186 ILE187 GLU188 THR189 TYR190 ASN191 LEU192 LEU193 SER194 GLU195 ARG196 TRP197 PHE198 THR199 HIS200 ALA201 SER202 PRO203 THR204 LEU205 PHE206 ASN207 ALA208 GLY209 THR210 ASN211 ARG212 PRO213 GLN214 LEU215 SER216 SER217 CYS218 PHE219 LEU220 LEU221 SER222 MET223 LYS224 ASP225 ASP226 SER227 ILE228 GLU229 GLY230 ILE231 TYR232 ASP233 THR234 LEU235 LYS236 GLN237 CYS238 ALA239 LEU240 ILE241 SER242 LYS243 SER244 ALA245 GLY246 GLY247 ILE248 GLY249 VAL250 ALA251 VAL252 SER253 CYS254 ILE255 ARG256 ALA257 THR258 GLY259 SER260 TYR261 ILE262 ALA263 GLY264 THR265 ASN266 GLY267 ASN268 SER269 ASN270 GLY271 LEU272 VAL273 PRO274 MET275 LEU276 ARG277 VAL278 TYR279 ASN280 ASN281 THR282 ALA283 ARG284 TYR285 VAL286 ASP287 GLN288 GLY289 GLY290 ASN291 LYS292 ARG293 PRO294 GLY295 ALA296 PHE297 ALA298 ILE299 TYR300 LEU301 GLU302 PRO303 TRP304 HIS305 LEU306 ASP307 ILE308 PHE309 GLU310 PHE311 LEU312 ASP313 LEU314 LYS315 LYS316 ASN317 THR318 GLY319 LYS320 GLU321 GLU322 GLN323 ARG324 ALA325 ARG326 ASP327 LEU328 PHE329 PHE330 ALA331 LEU332 TRP333 ILE334 PRO335 ASP336 LEU337 PHE338 MET339 LYS340 ARG341 VAL342 GLU343 THR344 ASN345 GLN346 ASP347 TRP348 SER349 LEU350 MET351 CYS352 PRO353 ASN354 GLU355 CYS356 PRO357 GLY358 LEU359 ASP360 GLU361 VAL362 TRP363 GLY364 GLU365 GLU366 PHE367 GLU368 LYS369 LEU370 TYR371 ALA372 SER373 TYR374 GLU375 LYS376 GLN377 GLY378 ARG379 VAL380 ARG381 LYS382 VAL383 VAL384 LYS385 ALA386 GLN387 GLN388 LEU389 TRP390 TYR391 ALA392 ILE393 ILE394 GLU395 SER396 GLN397 THR398 GLU399 THR400 GLY401 THR402 PRO403 TYR404 MET405 LEU406 TYR407 LYS408 ASP409 SER410 CYS411 ASN412 ARG413 LYS414 SER415 ASN416 GLN417 GLN418 ASN419 LEU420 GLY421 THR422 ILE423 LYS424 CYS425 SER426 ASN427 LEU428 CYS429 THR430 GLU431 ILE432 VAL433 GLU434 TYR435 THR436 SER437 LYS438 ASP439 GLU440 VAL441 ALA442 VAL443 CYS444 ASN445 LEU446 ALA447 SER448 LEU449 ALA450 LEU451 ASN452 MET453 TYR454 VAL455 THR456 SER457 GLU458 HIS459 THR460 TYR461 ASP462 PHE463 LYS464 LYS465 LEU466 ALA467 GLU468 VAL469 THR470 LYS471 VAL472 VAL473 VAL474 ARG475 ASN476 LEU477 ASN478 LYS479 ILE480 ILE481 ASP482 ILE483 ASN484 TYR485 TYR486 PRO487 VAL488 PRO489 GLU490 ALA491 CYS492 LEU493 SER494 ASN495 LYS496 ARG497 HIS498 ARG499 PRO500 ILE501 GLY502 ILE503 GLY504 VAL505 GLN506 GLY507 LEU508 ALA509 ASP510 ALA511 PHE512 ILE513 LEU514 MET515 ARG516 TYR517 PRO518 PHE519 GLU520 SER521 ALA522 GLU523 ALA524 GLN525 LEU526 LEU527 ASN528 LYS529 GLN530 ILE531 PHE532 GLU533 THR534 ILE535 TYR536 TYR537 GLY538 ALA539 LEU540 GLU541 ALA542 SER543 CYS544 ASP545 LEU546 ALA547 LYS548 GLU549 GLN550 GLY551 PRO552 TYR553 GLU554 THR555 TYR556 GLU557 GLY558 SER559 PRO560 VAL561 SER562 LYS563 GLY564 ILE565 LEU566 GLN567 TYR568 ASP569 MET570 TRP571 ASN572 VAL573 THR574 PRO575 THR576 ASP577 LEU578 TRP579 ASP580 TRP581 LYS582 VAL583 LEU584 LYS585 GLU586 LYS587 ILE588 ALA589 LYS590 TYR591 GLY592 ILE593 ARG594 ASN595 SER596 LEU597 LEU598 ILE599 ALA600 PRO601 MET602 PRO603 THR604 ALA605 SER606 THR607 ALA608 GLN609 ILE610 LEU611 GLY612 ASN613 ASN614 GLU615 SER616 ILE617 GLU618 PRO619 TYR620 THR621 SER622 ASN623 ILE624 TYR625 THR626 ARG627 ARG628 VAL629 LEU630 SER631 GLY632 GLU633 PHE634 GLN635 ILE636 VAL637 ASN638 PRO639 HIS640 LEU641 LEU642 LYS643 ASP644 LEU645 THR646 GLU647 ARG648 GLY649 LEU650 TRP651 HIS652 GLU653 GLU654 MET655 LYS656 ASN657 GLN658 ILE659 ILE660 ALA661 CYS662 ASN663 GLY664 SER665 ILE666 GLN667 SER668 ILE669 PRO670 GLU671 ILE672 PRO673 ASP674 ASP675 LEU676 LYS677 GLN678 LEU679 TYR680 LYS681 THR682 VAL683 TRP684 GLU685 ILE686 SER687 GLN688 LYS689 THR690 VAL691 LEU692 LYS693 MET694 ALA695 ALA696 GLU697 ARG698 GLY699 ALA700 PHE701 ILE702 ASP703 GLN704 SER705 GLN706 SER707 LEU708 ASN709 ILE710 HIS711 ILE712 ALA713 GLU714 PRO715 ASN716 TYR717 GLY718 LYS719 LEU720 THR721 SER722 MET723 HIS724 PHE725 TYR726 GLY727 TRP728 LYS729 GLN730 GLY731 LEU732 LYS733 THR734 GLY735 MET736 TYR737 TYR738 LEU739 ARG740 THR741 ARG742
Unit 2 HIS2 VAL3 ILE4 LYS5 ARG6 ASP7 GLY8 ARG9 GLN10 GLU11 ARG12 VAL13 MET14 PHE15 ASP16 LYS17 ILE18 THR19 SER20 ARG21 ILE22 GLN23 LYS24 LEU25 CYS26 TYR27 GLY28 LEU29 ASN30 MET31 ASP32 PHE33 VAL34 ASP35 PRO36 ALA37 GLN38 ILE39 THR40 MET41 LYS42 VAL43 ILE44 GLN45 GLY46 LEU47 TYR48 VAL51 THR52 THR53 VAL54 GLU55 LEU56 ASP57 THR58 LEU59 ALA60 ALA61 GLU62 THR63 ALA64 ALA65 THR66 LEU67 THR68 THR69 LYS70 HIS71 PRO72 ASP73 TYR74 ALA75 ILE76 LEU77 ALA78 ALA79 ARG80 ILE81 ALA82 VAL83 SER84 ASN85 LEU86 HIS87 LYS88 GLU89 THR90 LYS91 LYS92 VAL93 PHE94 SER95 ASP96 VAL97 MET98 GLU99 ASP100 LEU101 TYR102 ASN103 TYR104 ILE105 ASN106 PRO107 HIS108 ASN109 GLY110 LYS111 HIS112 SER113 PRO114 MET115 VAL116 ALA117 LYS118 SER119 THR120 LEU121 ASP122 ILE123 VAL124 LEU125 ALA126 ASN127 LYS128 ASP129 ARG130 LEU131 ASN132 SER133 ALA134 ILE135 ILE136 TYR137 ASP138 ARG139 ASP140 PHE141 SER142 TYR143 ASN144 TYR145 PHE146 GLY147 PHE148 LYS149 THR150 LEU151 GLU152 ARG153 SER154 TYR155 LEU156 LEU157 LYS158 ILE159 ASN160 GLY161 LYS162 VAL163 ALA164 GLU165 ARG166 PRO167 GLN168 HIS169 MET170 LEU171 MET172 ARG173 VAL174 SER175 VAL176 GLY177 ILE178 HIS179 LYS180 GLU181 ASP182 ILE183 ASP184 ALA185 ALA186 ILE187 GLU188 THR189 TYR190 ASN191 LEU192 LEU193 SER194 GLU195 ARG196 TRP197 PHE198 THR199 HIS200 ALA201 SER202 PRO203 THR204 LEU205 PHE206 ASN207 ALA208 GLY209 THR210 ASN211 ARG212 PRO213 GLN214 LEU215 SER216 SER217 CYS218 PHE219 LEU220 LEU221 SER222 MET223 LYS224 ASP225 ASP226 SER227 ILE228 GLU229 GLY230 ILE231 TYR232 ASP233 THR234 LEU235 LYS236 GLN237 CYS238 ALA239 LEU240 ILE241 SER242 LYS243 SER244 ALA245 GLY246 GLY247 ILE248 GLY249 VAL250 ALA251 VAL252 SER253 CYS254 ILE255 ARG256 ALA257 THR258 GLY259 SER260 TYR261 ILE262 ALA263 GLY264 THR265 ASN266 GLY267 ASN268 SER269 ASN270 GLY271 LEU272 VAL273 PRO274 MET275 LEU276 ARG277 VAL278 TYR279 ASN280 ASN281 THR282 ALA283 ARG284 TYR285 VAL286 ASP287 GLN288 GLY289 GLY290 ASN291 LYS292 ARG293 PRO294 GLY295 ALA296 PHE297 ALA298 ILE299 TYR300 LEU301 GLU302 PRO303 TRP304 HIS305 LEU306 ASP307 ILE308 PHE309 GLU310 PHE311 LEU312 ASP313 LEU314 LYS315 LYS316 ASN317 THR318 GLY319 LYS320 GLU321 GLU322 GLN323 ARG324 ALA325 ARG326 ASP327 LEU328 PHE329 PHE330 ALA331 LEU332 TRP333 ILE334 PRO335 ASP336 LEU337 PHE338 MET339 LYS340 ARG341 VAL342 GLU343 THR344 ASN345 GLN346 ASP347 TRP348 SER349 LEU350 MET351 CYS352 PRO353 ASN354 GLU355 CYS356 PRO357 GLY358 LEU359 ASP360 GLU361 VAL362 TRP363 GLY364 GLU365 GLU366 PHE367 GLU368 LYS369 LEU370 TYR371 ALA372 SER373 TYR374 GLU375 LYS376 GLN377 GLY378 ARG379 VAL380 ARG381 LYS382 VAL383 VAL384 LYS385 ALA386 GLN387 GLN388 LEU389 TRP390 TYR391 ALA392 ILE393 ILE394 GLU395 SER396 GLN397 THR398 GLU399 THR400 GLY401 THR402 PRO403 TYR404 MET405 LEU406 TYR407 LYS408 ASP409 SER410 CYS411 ASN412 ARG413 LYS414 SER415 ASN416 GLN417 GLN418 ASN419 LEU420 GLY421 THR422 ILE423 LYS424 CYS425 SER426 ASN427 LEU428 CYS429 THR430 GLU431 ILE432 VAL433 GLU434 TYR435 THR436 SER437 LYS438 ASP439 GLU440 VAL441 ALA442 VAL443 CYS444 ASN445 LEU446 ALA447 SER448 LEU449 ALA450 LEU451 ASN452 MET453 TYR454 VAL455 THR456 SER457 GLU458 HIS459 THR460 TYR461 ASP462 PHE463 LYS464 LYS465 LEU466 ALA467 GLU468 VAL469 THR470 LYS471 VAL472 VAL473 VAL474 ARG475 ASN476 LEU477 ASN478 LYS479 ILE480 ILE481 ASP482 ILE483 ASN484 TYR485 TYR486 PRO487 VAL488 PRO489 GLU490 ALA491 CYS492 LEU493 SER494 ASN495 LYS496 ARG497 HIS498 ARG499 PRO500 ILE501 GLY502 ILE503 GLY504 VAL505 GLN506 GLY507 LEU508 ALA509 ASP510 ALA511 PHE512 ILE513 LEU514 MET515 ARG516 TYR517 PRO518 PHE519 GLU520 SER521 ALA522 GLU523 ALA524 GLN525 LEU526 LEU527 ASN528 LYS529 GLN530 ILE531 PHE532 GLU533 THR534 ILE535 TYR536 TYR537 GLY538 ALA539 LEU540 GLU541 ALA542 SER543 CYS544 ASP545 LEU546 ALA547 LYS548 GLU549 GLN550 GLY551 PRO552 TYR553 GLU554 THR555 TYR556 GLU557 GLY558 SER559 PRO560 VAL561 SER562 LYS563 GLY564 ILE565 LEU566 GLN567 TYR568 ASP569 MET570 TRP571 ASN572 VAL573 THR574 PRO575 THR576 ASP577 LEU578 TRP579 ASP580 TRP581 LYS582 VAL583 LEU584 LYS585 GLU586 LYS587 ILE588 ALA589 LYS590 TYR591 GLY592 ILE593 ARG594 ASN595 SER596 LEU597 LEU598 ILE599 ALA600 PRO601 MET602 PRO603 THR604 ALA605 SER606 THR607 ALA608 GLN609 ILE610 LEU611 GLY612 ASN613 ASN614 GLU615 SER616 ILE617 GLU618 PRO619 TYR620 THR621 SER622 ASN623 ILE624 TYR625 THR626 ARG627 ARG628 GLU633 PHE634 GLN635 ILE636 VAL637 ASN638 PRO639 HIS640 LEU641 LEU642 LYS643 ASP644 LEU645 THR646 GLU647 ARG648 GLY649 LEU650 TRP651 HIS652 GLU653 GLU654 MET655 LYS656 ASN657 GLN658 ILE659 ILE660 ALA661 CYS662 ASN663 GLY664 SER665 ILE666 GLN667 SER668 ILE669 PRO670 GLU671 ILE672 PRO673 ASP674 ASP675 LEU676 LYS677 GLN678 LEU679 TYR680 LYS681 THR682 VAL683 TRP684 GLU685 ILE686 SER687 GLN688 LYS689 THR690 VAL691 LEU692 LYS693 MET694 ALA695 ALA696 GLU697 ARG698 GLY699 ALA700 PHE701 ILE702 ASP703 GLN704 SER705 GLN706 SER707 LEU708 ASN709 ILE710 HIS711 ILE712 ALA713 GLU714 PRO715 ASN716 TYR717 GLY718 LYS719 LEU720 THR721 SER722 MET723 HIS724 PHE725 TYR726 GLY727 TRP728 LYS729 GLN730 GLY731 LEU732 LYS733 THR734 GLY735 MET736 TYR737 TYR738 LEU739 ARG740 THR741 ARG742
Ligands
Unit 3 MG801 TTP802 GDP803 SO4805 SO4806 SO4807
Unit 4 MG801 TTP802 GDP803 SO4804
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany