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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF A FUNCTIONAL RIBONUCLEOPROTEIN PSEUDOURIDINE SY BOUND TO A SUBSTRATE RNA
Keywords PROTEIN-RNA COMPLEX, BOX H/ACA, RIBONUCLEOPROTEIN PARTICLES, PSEUDOURIDINE SYNTHASE, PSEUDOURIDYLASE, PSEUDOURIDYLATION, EDITING, POST-TRANSCRIPTIONAL MODIFICATION, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PR ISOMERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3HJY     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PSEUDOURIDINE SYNTHASE CBF5  A 320 2544 0
2  Protein   RIBOSOME BIOGENESIS PROTEIN NOP10  B 53 445 0
3  RNA    C 21 450 0
4  RNA    D 25 521 0
5  RNA    E 14 300 0
total       433 4260 0

Proteins
Unit 1 ARG11 ILE12 LEU13 PRO14 ALA15 ASP16 ILE17 LYS18 ARG19 GLU20 VAL21 LEU22 ILE23 LYS24 ASP25 GLU26 ASN27 ALA28 GLU29 THR30 ASN31 PRO32 ASP33 TRP34 GLY35 PHE36 PRO37 PRO38 GLU39 LYS40 ARG41 PRO42 ILE43 GLU44 MET45 HIS46 ILE47 GLN48 PHE49 GLY50 VAL51 ILE52 ASN53 LEU54 ASP55 LYS56 PRO57 PRO58 GLY59 PRO60 THR61 SER62 HIS63 GLU64 VAL65 VAL66 ALA67 TRP68 ILE69 LYS70 LYS71 ILE72 LEU73 ASN74 LEU75 GLU76 LYS77 ALA78 GLY79 HIS80 GLY81 GLY82 THR83 LEU84 ASP85 PRO86 LYS87 VAL88 SER89 GLY90 VAL91 LEU92 PRO93 VAL94 ALA95 LEU96 GLU97 LYS98 ALA99 THR100 ARG101 VAL102 VAL103 GLN104 ALA105 LEU106 LEU107 PRO108 ALA109 GLY110 LYS111 GLU112 TYR113 VAL114 ALA115 LEU116 MET117 HIS118 LEU119 HIS120 GLY121 ASP122 VAL123 PRO124 GLU125 ASP126 LYS127 ILE128 ILE129 GLN130 VAL131 MET132 LYS133 GLU134 PHE135 GLU136 GLY137 GLU138 ILE139 ILE140 GLN141 ARG142 PRO143 PRO144 LEU145 LEU153 ARG154 THR155 ARG156 LYS157 VAL158 TYR159 TYR160 ILE161 GLU162 VAL163 LEU164 GLU165 ILE166 GLU167 GLY168 ARG169 ASP170 VAL171 LEU172 PHE173 ARG174 VAL175 GLY176 VAL177 GLU178 ALA179 GLY180 THR181 TYR182 ILE183 ARG184 SER185 LEU186 ILE187 HIS188 HIS189 ILE190 GLY191 LEU192 ALA193 LEU194 GLY195 VAL196 GLY197 ALA198 HIS199 MET200 SER201 GLU202 LEU203 ARG204 ARG205 THR206 ARG207 SER208 GLY209 PRO210 PHE211 LYS212 GLU213 ASP214 GLU215 THR216 LEU217 ILE218 THR219 LEU220 HIS221 ASP222 LEU223 VAL224 ASP225 TYR226 TYR227 TYR228 PHE229 TRP230 LYS231 GLU232 ASP233 GLY234 ILE235 GLU236 GLU237 TYR238 PHE239 ARG240 LYS241 ALA242 ILE243 GLN244 PRO245 MET246 GLU247 LYS248 ALA249 VAL250 GLU251 HIS252 LEU253 PRO254 LYS255 VAL256 TRP257 ILE258 LYS259 ASP260 SER261 ALA262 VAL263 ALA264 ALA265 VAL266 THR267 HIS268 GLY269 ALA270 ASP271 LEU272 ALA273 VAL274 PRO275 GLY276 ILE277 ALA278 LYS279 LEU280 HIS281 ALA282 GLY283 ILE284 LYS285 ARG286 GLY287 ASP288 LEU289 VAL290 ALA291 ILE292 MET293 THR294 LEU295 LYS296 ASP297 GLU298 LEU299 VAL300 ALA301 LEU302 GLY303 LYS304 ALA305 MET306 MET307 THR308 SER309 GLN310 GLU311 MET312 LEU313 GLU314 LYS315 THR316 LYS317 GLY318 ILE319 ALA320 VAL321 ASP322 VAL323 GLU324 LYS325 VAL326 PHE327 MET328 PRO329 ARG330 ASP331 TRP332 TYR333 PRO334 LYS335 LEU336 TRP337
Unit 2 PHE3 ARG4 ILE5 ARG6 LYS7 CYS8 PRO9 LYS10 CYS11 GLY12 ARG13 TYR14 THR15 LEU16 LYS17 GLU18 VAL19 CYS20 PRO21 VAL22 CYS23 GLY24 GLU25 LYS26 THR27 LYS28 VAL29 ALA30 HIS31 PRO32 PRO33 ARG34 PHE35 SER36 PRO37 GLU38 ASP39 PRO40 TYR41 GLY42 GLU43 TYR44 ARG45 ARG46 ARG47 TRP48 LYS49 ARG50 GLU51 VAL52 LEU53 GLY54 ILE55

Nucleic acids
Unit 3 G1 G2 G3 C4 U5 C6 C7 G8 G9 A10 A11 A12 C13 C14 G15 C16 G17 G18 C19 G20 C21
Unit 4 G1 C2 G3 C4 U5 U6 C7 G8 C9 U10 C11 C12 C13 G14 G15 A16 G17 C18 C19 C20 A21 C22 A23 C24 U25
Unit 5 G4 G5 A6 G7 C8 G9 U10 G11 C12 G13 G14 U15 U16 U17

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany