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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURES OF THYMIDYLATE SYNTHASE R163K WITH SUBSTRATES AND INHIBITORS SHOW SUBUNIT ASYMMETRY
Keywords TRANSFERASE, METHYLTRANSFERASE, NUCLEOTIDE BIOSYNTHESIS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3H9K     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   THYMIDYLATE SYNTHASE  A 281 2268 0
2  Protein   THYMIDYLATE SYNTHASE  B 281 2268 0
3  Protein   THYMIDYLATE SYNTHASE  C 281 2268 0
4  Protein   THYMIDYLATE SYNTHASE  D 280 2261 0
5  Protein   THYMIDYLATE SYNTHASE  E 281 2268 0
6  Ligand   THYMIDYLATE SYNTHASE  A 2 0 25
7  Ligand   THYMIDYLATE SYNTHASE  B 2 0 25
8  Ligand   THYMIDYLATE SYNTHASE  C 1 0 5
9  Ligand   THYMIDYLATE SYNTHASE  D 2 0 26
10 Water     54 0 54
total       1465 11333 135
Proteins
Unit 1 PRO26 PRO27 HIS28 GLY29 GLU30 LEU31 GLN32 TYR33 LEU34 GLY35 GLN36 ILE37 GLN38 HIS39 ILE40 LEU41 ARG42 CYS43 GLY44 VAL45 ARG46 LYS47 ASP48 ASP49 ARG50 THR51 GLY52 THR53 GLY54 THR55 LEU56 SER57 VAL58 PHE59 GLY60 MET61 GLN62 ALA63 ARG64 TYR65 SER66 LEU67 ARG68 ASP69 GLU70 PHE71 PRO72 LEU73 LEU74 THR75 THR76 LYS77 ARG78 VAL79 PHE80 TRP81 LYS82 GLY83 VAL84 LEU85 GLU86 GLU87 LEU88 LEU89 TRP90 PHE91 ILE92 LYS93 GLY94 SER95 THR96 ASN97 ALA98 LYS99 GLU100 LEU101 SER102 SER103 LYS104 GLY105 VAL106 LYS107 ILE108 TRP109 ASP110 ALA111 ASN112 GLY113 SER114 ARG115 ASP116 PHE117 LEU118 ASP119 SER120 LEU121 GLY122 PHE123 SER124 THR125 ARG126 GLU127 GLU128 GLY129 ASP130 LEU131 GLY132 PRO133 VAL134 TYR135 GLY136 PHE137 GLN138 TRP139 ARG140 HIS141 PHE142 GLY143 ALA144 GLU145 TYR146 ARG147 ASP148 MET149 GLU150 SER151 ASP152 TYR153 SER154 GLY155 GLN156 GLY157 VAL158 ASP159 GLN160 LEU161 GLN162 LYS163 VAL164 ILE165 ASP166 THR167 ILE168 LYS169 THR170 ASN171 PRO172 ASP173 ASP174 ARG175 ARG176 ILE177 ILE178 MET179 CYS180 ALA181 TRP182 ASN183 PRO184 ARG185 ASP186 LEU187 PRO188 LEU189 MET190 ALA191 LEU192 PRO193 PRO194 CYS195 HIS196 ALA197 LEU198 CYS199 GLN200 PHE201 TYR202 VAL203 VAL204 ASN205 SER206 GLU207 LEU208 SER209 CYS210 GLN211 LEU212 TYR213 GLN214 ARG215 SER216 GLY217 ASP218 MET219 GLY220 LEU221 GLY222 VAL223 PRO224 PHE225 ASN226 ILE227 ALA228 SER229 TYR230 ALA231 LEU232 LEU233 THR234 TYR235 MET236 ILE237 ALA238 HIS239 ILE240 THR241 GLY242 LEU243 LYS244 PRO245 GLY246 ASP247 PHE248 ILE249 HIS250 THR251 LEU252 GLY253 ASP254 ALA255 HIS256 ILE257 TYR258 LEU259 ASN260 HIS261 ILE262 GLU263 PRO264 LEU265 LYS266 ILE267 GLN268 LEU269 GLN270 ARG271 GLU272 PRO273 ARG274 PRO275 PHE276 PRO277 LYS278 LEU279 ARG280 ILE281 LEU282 ARG283 LYS284 VAL285 GLU286 LYS287 ILE288 ASP289 ASP290 PHE291 LYS292 ALA293 GLU294 ASP295 PHE296 GLN297 ILE298 GLU299 GLY300 TYR301 ASN302 PRO303 HIS304 PRO305 THR306
Unit 2 PRO26 PRO27 HIS28 GLY29 GLU30 LEU31 GLN32 TYR33 LEU34 GLY35 GLN36 ILE37 GLN38 HIS39 ILE40 LEU41 ARG42 CYS43 GLY44 VAL45 ARG46 LYS47 ASP48 ASP49 ARG50 THR51 GLY52 THR53 GLY54 THR55 LEU56 SER57 VAL58 PHE59 GLY60 MET61 GLN62 ALA63 ARG64 TYR65 SER66 LEU67 ARG68 ASP69 GLU70 PHE71 PRO72 LEU73 LEU74 THR75 THR76 LYS77 ARG78 VAL79 PHE80 TRP81 LYS82 GLY83 VAL84 LEU85 GLU86 GLU87 LEU88 LEU89 TRP90 PHE91 ILE92 LYS93 GLY94 SER95 THR96 ASN97 ALA98 LYS99 GLU100 LEU101 SER102 SER103 LYS104 GLY105 VAL106 LYS107 ILE108 TRP109 ASP110 ALA111 ASN112 GLY113 SER114 ARG115 ASP116 PHE117 LEU118 ASP119 SER120 LEU121 GLY122 PHE123 SER124 THR125 ARG126 GLU127 GLU128 GLY129 ASP130 LEU131 GLY132 PRO133 VAL134 TYR135 GLY136 PHE137 GLN138 TRP139 ARG140 HIS141 PHE142 GLY143 ALA144 GLU145 TYR146 ARG147 ASP148 MET149 GLU150 SER151 ASP152 TYR153 SER154 GLY155 GLN156 GLY157 VAL158 ASP159 GLN160 LEU161 GLN162 LYS163 VAL164 ILE165 ASP166 THR167 ILE168 LYS169 THR170 ASN171 PRO172 ASP173 ASP174 ARG175 ARG176 ILE177 ILE178 MET179 CYS180 ALA181 TRP182 ASN183 PRO184 ARG185 ASP186 LEU187 PRO188 LEU189 MET190 ALA191 LEU192 PRO193 PRO194 CYS195 HIS196 ALA197 LEU198 CYS199 GLN200 PHE201 TYR202 VAL203 VAL204 ASN205 SER206 GLU207 LEU208 SER209 CYS210 GLN211 LEU212 TYR213 GLN214 ARG215 SER216 GLY217 ASP218 MET219 GLY220 LEU221 GLY222 VAL223 PRO224 PHE225 ASN226 ILE227 ALA228 SER229 TYR230 ALA231 LEU232 LEU233 THR234 TYR235 MET236 ILE237 ALA238 HIS239 ILE240 THR241 GLY242 LEU243 LYS244 PRO245 GLY246 ASP247 PHE248 ILE249 HIS250 THR251 LEU252 GLY253 ASP254 ALA255 HIS256 ILE257 TYR258 LEU259 ASN260 HIS261 ILE262 GLU263 PRO264 LEU265 LYS266 ILE267 GLN268 LEU269 GLN270 ARG271 GLU272 PRO273 ARG274 PRO275 PHE276 PRO277 LYS278 LEU279 ARG280 ILE281 LEU282 ARG283 LYS284 VAL285 GLU286 LYS287 ILE288 ASP289 ASP290 PHE291 LYS292 ALA293 GLU294 ASP295 PHE296 GLN297 ILE298 GLU299 GLY300 TYR301 ASN302 PRO303 HIS304 PRO305 THR306
Unit 3 PRO26 PRO27 HIS28 GLY29 GLU30 LEU31 GLN32 TYR33 LEU34 GLY35 GLN36 ILE37 GLN38 HIS39 ILE40 LEU41 ARG42 CYS43 GLY44 VAL45 ARG46 LYS47 ASP48 ASP49 ARG50 THR51 GLY52 THR53 GLY54 THR55 LEU56 SER57 VAL58 PHE59 GLY60 MET61 GLN62 ALA63 ARG64 TYR65 SER66 LEU67 ARG68 ASP69 GLU70 PHE71 PRO72 LEU73 LEU74 THR75 THR76 LYS77 ARG78 VAL79 PHE80 TRP81 LYS82 GLY83 VAL84 LEU85 GLU86 GLU87 LEU88 LEU89 TRP90 PHE91 ILE92 LYS93 GLY94 SER95 THR96 ASN97 ALA98 LYS99 GLU100 LEU101 SER102 SER103 LYS104 GLY105 VAL106 LYS107 ILE108 TRP109 ASP110 ALA111 ASN112 GLY113 SER114 ARG115 ASP116 PHE117 LEU118 ASP119 SER120 LEU121 GLY122 PHE123 SER124 THR125 ARG126 GLU127 GLU128 GLY129 ASP130 LEU131 GLY132 PRO133 VAL134 TYR135 GLY136 PHE137 GLN138 TRP139 ARG140 HIS141 PHE142 GLY143 ALA144 GLU145 TYR146 ARG147 ASP148 MET149 GLU150 SER151 ASP152 TYR153 SER154 GLY155 GLN156 GLY157 VAL158 ASP159 GLN160 LEU161 GLN162 LYS163 VAL164 ILE165 ASP166 THR167 ILE168 LYS169 THR170 ASN171 PRO172 ASP173 ASP174 ARG175 ARG176 ILE177 ILE178 MET179 CYS180 ALA181 TRP182 ASN183 PRO184 ARG185 ASP186 LEU187 PRO188 LEU189 MET190 ALA191 LEU192 PRO193 PRO194 CYS195 HIS196 ALA197 LEU198 CYS199 GLN200 PHE201 TYR202 VAL203 VAL204 ASN205 SER206 GLU207 LEU208 SER209 CYS210 GLN211 LEU212 TYR213 GLN214 ARG215 SER216 GLY217 ASP218 MET219 GLY220 LEU221 GLY222 VAL223 PRO224 PHE225 ASN226 ILE227 ALA228 SER229 TYR230 ALA231 LEU232 LEU233 THR234 TYR235 MET236 ILE237 ALA238 HIS239 ILE240 THR241 GLY242 LEU243 LYS244 PRO245 GLY246 ASP247 PHE248 ILE249 HIS250 THR251 LEU252 GLY253 ASP254 ALA255 HIS256 ILE257 TYR258 LEU259 ASN260 HIS261 ILE262 GLU263 PRO264 LEU265 LYS266 ILE267 GLN268 LEU269 GLN270 ARG271 GLU272 PRO273 ARG274 PRO275 PHE276 PRO277 LYS278 LEU279 ARG280 ILE281 LEU282 ARG283 LYS284 VAL285 GLU286 LYS287 ILE288 ASP289 ASP290 PHE291 LYS292 ALA293 GLU294 ASP295 PHE296 GLN297 ILE298 GLU299 GLY300 TYR301 ASN302 PRO303 HIS304 PRO305 THR306
Unit 4 PRO27 HIS28 GLY29 GLU30 LEU31 GLN32 TYR33 LEU34 GLY35 GLN36 ILE37 GLN38 HIS39 ILE40 LEU41 ARG42 CYS43 GLY44 VAL45 ARG46 LYS47 ASP48 ASP49 ARG50 THR51 GLY52 THR53 GLY54 THR55 LEU56 SER57 VAL58 PHE59 GLY60 MET61 GLN62 ALA63 ARG64 TYR65 SER66 LEU67 ARG68 ASP69 GLU70 PHE71 PRO72 LEU73 LEU74 THR75 THR76 LYS77 ARG78 VAL79 PHE80 TRP81 LYS82 GLY83 VAL84 LEU85 GLU86 GLU87 LEU88 LEU89 TRP90 PHE91 ILE92 LYS93 GLY94 SER95 THR96 ASN97 ALA98 LYS99 GLU100 LEU101 SER102 SER103 LYS104 GLY105 VAL106 LYS107 ILE108 TRP109 ASP110 ALA111 ASN112 GLY113 SER114 ARG115 ASP116 PHE117 LEU118 ASP119 SER120 LEU121 GLY122 PHE123 SER124 THR125 ARG126 GLU127 GLU128 GLY129 ASP130 LEU131 GLY132 PRO133 VAL134 TYR135 GLY136 PHE137 GLN138 TRP139 ARG140 HIS141 PHE142 GLY143 ALA144 GLU145 TYR146 ARG147 ASP148 MET149 GLU150 SER151 ASP152 TYR153 SER154 GLY155 GLN156 GLY157 VAL158 ASP159 GLN160 LEU161 GLN162 LYS163 VAL164 ILE165 ASP166 THR167 ILE168 LYS169 THR170 ASN171 PRO172 ASP173 ASP174 ARG175 ARG176 ILE177 ILE178 MET179 CYS180 ALA181 TRP182 ASN183 PRO184 ARG185 ASP186 LEU187 PRO188 LEU189 MET190 ALA191 LEU192 PRO193 PRO194 CYS195 HIS196 ALA197 LEU198 CYS199 GLN200 PHE201 TYR202 VAL203 VAL204 ASN205 SER206 GLU207 LEU208 SER209 CYS210 GLN211 LEU212 TYR213 GLN214 ARG215 SER216 GLY217 ASP218 MET219 GLY220 LEU221 GLY222 VAL223 PRO224 PHE225 ASN226 ILE227 ALA228 SER229 TYR230 ALA231 LEU232 LEU233 THR234 TYR235 MET236 ILE237 ALA238 HIS239 ILE240 THR241 GLY242 LEU243 LYS244 PRO245 GLY246 ASP247 PHE248 ILE249 HIS250 THR251 LEU252 GLY253 ASP254 ALA255 HIS256 ILE257 TYR258 LEU259 ASN260 HIS261 ILE262 GLU263 PRO264 LEU265 LYS266 ILE267 GLN268 LEU269 GLN270 ARG271 GLU272 PRO273 ARG274 PRO275 PHE276 PRO277 LYS278 LEU279 ARG280 ILE281 LEU282 ARG283 LYS284 VAL285 GLU286 LYS287 ILE288 ASP289 ASP290 PHE291 LYS292 ALA293 GLU294 ASP295 PHE296 GLN297 ILE298 GLU299 GLY300 TYR301 ASN302 PRO303 HIS304 PRO305 THR306
Unit 5 PRO26 PRO27 HIS28 GLY29 GLU30 LEU31 GLN32 TYR33 LEU34 GLY35 GLN36 ILE37 GLN38 HIS39 ILE40 LEU41 ARG42 CYS43 GLY44 VAL45 ARG46 LYS47 ASP48 ASP49 ARG50 THR51 GLY52 THR53 GLY54 THR55 LEU56 SER57 VAL58 PHE59 GLY60 MET61 GLN62 ALA63 ARG64 TYR65 SER66 LEU67 ARG68 ASP69 GLU70 PHE71 PRO72 LEU73 LEU74 THR75 THR76 LYS77 ARG78 VAL79 PHE80 TRP81 LYS82 GLY83 VAL84 LEU85 GLU86 GLU87 LEU88 LEU89 TRP90 PHE91 ILE92 LYS93 GLY94 SER95 THR96 ASN97 ALA98 LYS99 GLU100 LEU101 SER102 SER103 LYS104 GLY105 VAL106 LYS107 ILE108 TRP109 ASP110 ALA111 ASN112 GLY113 SER114 ARG115 ASP116 PHE117 LEU118 ASP119 SER120 LEU121 GLY122 PHE123 SER124 THR125 ARG126 GLU127 GLU128 GLY129 ASP130 LEU131 GLY132 PRO133 VAL134 TYR135 GLY136 PHE137 GLN138 TRP139 ARG140 HIS141 PHE142 GLY143 ALA144 GLU145 TYR146 ARG147 ASP148 MET149 GLU150 SER151 ASP152 TYR153 SER154 GLY155 GLN156 GLY157 VAL158 ASP159 GLN160 LEU161 GLN162 LYS163 VAL164 ILE165 ASP166 THR167 ILE168 LYS169 THR170 ASN171 PRO172 ASP173 ASP174 ARG175 ARG176 ILE177 ILE178 MET179 CYS180 ALA181 TRP182 ASN183 PRO184 ARG185 ASP186 LEU187 PRO188 LEU189 MET190 ALA191 LEU192 PRO193 PRO194 CYS195 HIS196 ALA197 LEU198 CYS199 GLN200 PHE201 TYR202 VAL203 VAL204 ASN205 SER206 GLU207 LEU208 SER209 CYS210 GLN211 LEU212 TYR213 GLN214 ARG215 SER216 GLY217 ASP218 MET219 GLY220 LEU221 GLY222 VAL223 PRO224 PHE225 ASN226 ILE227 ALA228 SER229 TYR230 ALA231 LEU232 LEU233 THR234 TYR235 MET236 ILE237 ALA238 HIS239 ILE240 THR241 GLY242 LEU243 LYS244 PRO245 GLY246 ASP247 PHE248 ILE249 HIS250 THR251 LEU252 GLY253 ASP254 ALA255 HIS256 ILE257 TYR258 LEU259 ASN260 HIS261 ILE262 GLU263 PRO264 LEU265 LYS266 ILE267 GLN268 LEU269 GLN270 ARG271 GLU272 PRO273 ARG274 PRO275 PHE276 PRO277 LYS278 LEU279 ARG280 ILE281 LEU282 ARG283 LYS284 VAL285 GLU286 LYS287 ILE288 ASP289 ASP290 PHE291 LYS292 ALA293 GLU294 ASP295 PHE296 GLN297 ILE298 GLU299 GLY300 TYR301 ASN302 PRO303 HIS304 PRO305 THR306
Ligands
Unit 6 UFP400 EDO401
Unit 7 UFP400 EDO401
Unit 8 PO4365
Unit 9 UFP565 PO4616
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany