3GXP - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF ACID-ALPHA-GALACTOSIDASE A COMPLEXED WI GALACTOSE AT PH 4.5
• Keywords: HYDROLASE, DISEASE MUTATION, DISULFIDE BOND, GLYCOPROTEIN, GLYCOSIDASE, LYSOSOME, RNA EDITING
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3GXP	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ALPHA-GALACTOSIDASE A	A	390	3122	0
2	Protein	ALPHA-GALACTOSIDASE A	B	391	3131	0
3	Ligand		C	3	0	39
4	Ligand		D	2	0	28
5	Ligand		E	2	0	28
6	Ligand		F	2	0	28
7	Ligand		G	2	0	28
8	Ligand	ALPHA-GALACTOSIDASE A	A	5	0	56
9	Ligand	ALPHA-GALACTOSIDASE A	B	6	0	49
10	Water			157	0	157
total				960	6253	413

Proteins

Unit 1

LEU 32 ASP 33 ASN 34 GLY 35 LEU 36 ALA 37 ARG 38 THR 39 PRO 40 THR 41 MET 42 GLY 43 TRP 44 LEU 45 HIS 46 TRP 47 GLU 48 ARG 49 PHE 50 MET 51 CYS 52 ASN 53 LEU 54 ASP 55 CYS 56 GLN 57 GLU 58 GLU 59 PRO 60 ASP 61 SER 62 CYS 63 ILE 64 SER 65 GLU 66 LYS 67 LEU 68 PHE 69 MET 70 GLU 71 MET 72 ALA 73 GLU 74 LEU 75 MET 76 VAL 77 SER 78 GLU 79 GLY 80 TRP 81 LYS 82 ASP 83 ALA 84 GLY 85 TYR 86 GLU 87 TYR 88 LEU 89 CYS 90 ILE 91 ASP 92 ASP 93 CYS 94 TRP 95 MET 96 ALA 97 PRO 98 GLN 99 ARG 100 ASP 101 SER 102 GLU 103 GLY 104 ARG 105 LEU 106 GLN 107 ALA 108 ASP 109 PRO 110 GLN 111 ARG 112 PHE 113 PRO 114 HIS 115 GLY 116 ILE 117 ARG 118 GLN 119 LEU 120 ALA 121 ASN 122 TYR 123 VAL 124 HIS 125 SER 126 LYS 127 GLY 128 LEU 129 LYS 130 LEU 131 GLY 132 ILE 133 TYR 134 ALA 135 ASP 136 VAL 137 GLY 138 ASN 139 LYS 140 THR 141 CYS 142 ALA 143 GLY 144 PHE 145 PRO 146 GLY 147 SER 148 PHE 149 GLY 150 TYR 151 TYR 152 ASP 153 ILE 154 ASP 155 ALA 156 GLN 157 THR 158 PHE 159 ALA 160 ASP 161 TRP 162 GLY 163 VAL 164 ASP 165 LEU 166 LEU 167 LYS 168 PHE 169 ASP 170 GLY 171 CYS 172 TYR 173 CYS 174 ASP 175 SER 176 LEU 177 GLU 178 ASN 179 LEU 180 ALA 181 ASP 182 GLY 183 TYR 184 LYS 185 HIS 186 MET 187 SER 188 LEU 189 ALA 190 LEU 191 ASN 192 ARG 193 THR 194 GLY 195 ARG 196 SER 197 ILE 198 VAL 199 TYR 200 SER 201 CYS 202 GLU 203 TRP 204 PRO 205 LEU 206 TYR 207 MET 208 TRP 209 PRO 210 PHE 211 GLN 212 LYS 213 PRO 214 ASN 215 TYR 216 THR 217 GLU 218 ILE 219 ARG 220 GLN 221 TYR 222 CYS 223 ASN 224 HIS 225 TRP 226 ARG 227 ASN 228 PHE 229 ALA 230 ASP 231 ILE 232 ASP 233 ASP 234 SER 235 TRP 236 LYS 237 SER 238 ILE 239 LYS 240 SER 241 ILE 242 LEU 243 ASP 244 TRP 245 THR 246 SER 247 PHE 248 ASN 249 GLN 250 GLU 251 ARG 252 ILE 253 VAL 254 ASP 255 VAL 256 ALA 257 GLY 258 PRO 259 GLY 260 GLY 261 TRP 262 ASN 263 ASP 264 PRO 265 ASP 266 MET 267 LEU 268 VAL 269 ILE 270 GLY 271 ASN 272 PHE 273 GLY 274 LEU 275 SER 276 TRP 277 ASN 278 GLN 279 GLN 280 VAL 281 THR 282 GLN 283 MET 284 ALA 285 LEU 286 TRP 287 ALA 288 ILE 289 MET 290 ALA 291 ALA 292 PRO 293 LEU 294 PHE 295 MET 296 SER 297 ASN 298 ASP 299 LEU 300 ARG 301 HIS 302 ILE 303 SER 304 PRO 305 GLN 306 ALA 307 LYS 308 ALA 309 LEU 310 LEU 311 GLN 312 ASP 313 LYS 314 ASP 315 VAL 316 ILE 317 ALA 318 ILE 319 ASN 320 GLN 321 ASP 322 PRO 323 LEU 324 GLY 325 LYS 326 GLN 327 GLY 328 TYR 329 GLN 330 LEU 331 ARG 332 GLN 333 GLY 334 ASP 335 ASN 336 PHE 337 GLU 338 VAL 339 TRP 340 GLU 341 ARG 342 PRO 343 LEU 344 SER 345 GLY 346 LEU 347 ALA 348 TRP 349 ALA 350 VAL 351 ALA 352 MET 353 ILE 354 ASN 355 ARG 356 GLN 357 GLU 358 ILE 359 GLY 360 GLY 361 PRO 362 ARG 363 SER 364 TYR 365 THR 366 ILE 367 ALA 368 VAL 369 ALA 370 SER 371 LEU 372 GLY 373 LYS 374 GLY 375 VAL 376 ALA 377 CYS 378 ASN 379 PRO 380 ALA 381 CYS 382 PHE 383 ILE 384 THR 385 GLN 386 LEU 387 LEU 388 PRO 389 VAL 390 LYS 391 ARG 392 LYS 393 LEU 394 GLY 395 PHE 396 TYR 397 GLU 398 TRP 399 THR 400 SER 401 ARG 402 LEU 403 ARG 404 SER 405 HIS 406 ILE 407 ASN 408 PRO 409 THR 410 GLY 411 THR 412 VAL 413 LEU 414 LEU 415 GLN 416 LEU 417 GLU 418 ASN 419 THR 420 MET 421

Unit 2

LEU 32 ASP 33 ASN 34 GLY 35 LEU 36 ALA 37 ARG 38 THR 39 PRO 40 THR 41 MET 42 GLY 43 TRP 44 LEU 45 HIS 46 TRP 47 GLU 48 ARG 49 PHE 50 MET 51 CYS 52 ASN 53 LEU 54 ASP 55 CYS 56 GLN 57 GLU 58 GLU 59 PRO 60 ASP 61 SER 62 CYS 63 ILE 64 SER 65 GLU 66 LYS 67 LEU 68 PHE 69 MET 70 GLU 71 MET 72 ALA 73 GLU 74 LEU 75 MET 76 VAL 77 SER 78 GLU 79 GLY 80 TRP 81 LYS 82 ASP 83 ALA 84 GLY 85 TYR 86 GLU 87 TYR 88 LEU 89 CYS 90 ILE 91 ASP 92 ASP 93 CYS 94 TRP 95 MET 96 ALA 97 PRO 98 GLN 99 ARG 100 ASP 101 SER 102 GLU 103 GLY 104 ARG 105 LEU 106 GLN 107 ALA 108 ASP 109 PRO 110 GLN 111 ARG 112 PHE 113 PRO 114 HIS 115 GLY 116 ILE 117 ARG 118 GLN 119 LEU 120 ALA 121 ASN 122 TYR 123 VAL 124 HIS 125 SER 126 LYS 127 GLY 128 LEU 129 LYS 130 LEU 131 GLY 132 ILE 133 TYR 134 ALA 135 ASP 136 VAL 137 GLY 138 ASN 139 LYS 140 THR 141 CYS 142 ALA 143 GLY 144 PHE 145 PRO 146 GLY 147 SER 148 PHE 149 GLY 150 TYR 151 TYR 152 ASP 153 ILE 154 ASP 155 ALA 156 GLN 157 THR 158 PHE 159 ALA 160 ASP 161 TRP 162 GLY 163 VAL 164 ASP 165 LEU 166 LEU 167 LYS 168 PHE 169 ASP 170 GLY 171 CYS 172 TYR 173 CYS 174 ASP 175 SER 176 LEU 177 GLU 178 ASN 179 LEU 180 ALA 181 ASP 182 GLY 183 TYR 184 LYS 185 HIS 186 MET 187 SER 188 LEU 189 ALA 190 LEU 191 ASN 192 ARG 193 THR 194 GLY 195 ARG 196 SER 197 ILE 198 VAL 199 TYR 200 SER 201 CYS 202 GLU 203 TRP 204 PRO 205 LEU 206 TYR 207 MET 208 TRP 209 PRO 210 PHE 211 GLN 212 LYS 213 PRO 214 ASN 215 TYR 216 THR 217 GLU 218 ILE 219 ARG 220 GLN 221 TYR 222 CYS 223 ASN 224 HIS 225 TRP 226 ARG 227 ASN 228 PHE 229 ALA 230 ASP 231 ILE 232 ASP 233 ASP 234 SER 235 TRP 236 LYS 237 SER 238 ILE 239 LYS 240 SER 241 ILE 242 LEU 243 ASP 244 TRP 245 THR 246 SER 247 PHE 248 ASN 249 GLN 250 GLU 251 ARG 252 ILE 253 VAL 254 ASP 255 VAL 256 ALA 257 GLY 258 PRO 259 GLY 260 GLY 261 TRP 262 ASN 263 ASP 264 PRO 265 ASP 266 MET 267 LEU 268 VAL 269 ILE 270 GLY 271 ASN 272 PHE 273 GLY 274 LEU 275 SER 276 TRP 277 ASN 278 GLN 279 GLN 280 VAL 281 THR 282 GLN 283 MET 284 ALA 285 LEU 286 TRP 287 ALA 288 ILE 289 MET 290 ALA 291 ALA 292 PRO 293 LEU 294 PHE 295 MET 296 SER 297 ASN 298 ASP 299 LEU 300 ARG 301 HIS 302 ILE 303 SER 304 PRO 305 GLN 306 ALA 307 LYS 308 ALA 309 LEU 310 LEU 311 GLN 312 ASP 313 LYS 314 ASP 315 VAL 316 ILE 317 ALA 318 ILE 319 ASN 320 GLN 321 ASP 322 PRO 323 LEU 324 GLY 325 LYS 326 GLN 327 GLY 328 TYR 329 GLN 330 LEU 331 ARG 332 GLN 333 GLY 334 ASP 335 ASN 336 PHE 337 GLU 338 VAL 339 TRP 340 GLU 341 ARG 342 PRO 343 LEU 344 SER 345 GLY 346 LEU 347 ALA 348 TRP 349 ALA 350 VAL 351 ALA 352 MET 353 ILE 354 ASN 355 ARG 356 GLN 357 GLU 358 ILE 359 GLY 360 GLY 361 PRO 362 ARG 363 SER 364 TYR 365 THR 366 ILE 367 ALA 368 VAL 369 ALA 370 SER 371 LEU 372 GLY 373 LYS 374 GLY 375 VAL 376 ALA 377 CYS 378 ASN 379 PRO 380 ALA 381 CYS 382 PHE 383 ILE 384 THR 385 GLN 386 LEU 387 LEU 388 PRO 389 VAL 390 LYS 391 ARG 392 LYS 393 LEU 394 GLY 395 PHE 396 TYR 397 GLU 398 TRP 399 THR 400 SER 401 ARG 402 LEU 403 ARG 404 SER 405 HIS 406 ILE 407 ASN 408 PRO 409 THR 410 GLY 411 THR 412 VAL 413 LEU 414 LEU 415 GLN 416 LEU 417 GLU 418 ASN 419 THR 420 MET 421 GLN 422

Ligands

Unit 3	NAG 1 NAG 2 MAN 3
Unit 4	NAG 1 NAG 2
Unit 5	NAG 1 NAG 2
Unit 6	NAG 1 NAG 2
Unit 7	NAG 1 NAG 2
Unit 8	SO4 1 NAG 430 NAG 498 GLA 3681 TAM 6744
Unit 9	SO4 2 SO4 3 SO4 4 MAN 694 MAN 695 GLA 3681