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Sequence, Chains, Asymmetric and Biological Units

Title THE 1.2 ANGSTROEM CRYSTAL STRUCTURE OF AN E.COLI TRNASER ACCEPTOR STEM MICROHELIX REVEALS TWO MAGNESIUM BINDING SITES
Keywords TRNASER/SERYL-TRNA-SYNTHETASE, TRNA ACCEPTOR STEM MICROHELIX, X-RAY STRUCTURE, IDENTITY ELEMENTS, RNA HYDRATION, MAGNESIUM BINDING SITES
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3GVN     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 7 154 0
2  RNA    B 7 139 0
3  Ligand   5'-R(*GP*GP*UP*GP*AP*GP*G)-3'  A 2 0 2
4 Water     97 0 97
total       113 293 99

Nucleic acids
Unit 1 G1 G2 U3 G4 A5 G6 G7
Unit 2 C66 C67 U68 C69 A70 C71 C72

Ligands
Unit 3 MG8 MG9

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany