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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND DDADP
Keywords Y-FAMILY POLYMERASE, POLYMERASE IOTA, ERROR PRONE REPLICATIO DAMAGE, DNA REPAIR, DNA REPLICATION, DNA SYNTHESIS, DNA-BIN DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL-BINDING, MUTA PROTEIN, NUCLEOTIDYLTRANSFERASE, NUCLEUS, SCHIFF BASE, TRAN TRANSFERASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3GV5     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE IOTA  B 379 2902 88
2  Other macromolecule   5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'  P 9 189 0
3  Other macromolecule   5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3'  T 13 257 0
4  Protein   DNA POLYMERASE IOTA  D 383 2924 88
5  Other macromolecule   5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'  E 9 189 0
6  Other macromolecule   5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3'  F 13 257 0
7  Ligand   DNA POLYMERASE IOTA  B 5 0 34
8  Ligand   5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'  P 1 0 1
9  Ligand   DNA POLYMERASE IOTA  D 4 0 28
10  Ligand   5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3'  F 1 0 1
11 Water     737 0 737
total       1554 6718 977

Proteins
Unit 1 ARG28 VAL29 ILE30 VAL31 HIS32 VAL33 ASP34 LEU35 ASP36 CYS37 PHE38 TYR39 ALA40 GLN41 VAL42 GLU43 MSE44 ILE45 SER46 ASN47 PRO48 GLU49 LEU50 LYS51 ASP52 LYS53 PRO54 LEU55 GLY56 VAL57 GLN58 GLN59 LYS60 TYR61 LEU62 VAL63 VAL64 THR65 CYS66 ASN67 TYR68 GLU69 ALA70 ARG71 LYS72 LEU73 GLY74 VAL75 LYS76 LYS77 LEU78 MSE79 ASN80 VAL81 ARG82 ASP83 ALA84 LYS85 GLU86 LYS87 CYS88 PRO89 GLN90 LEU91 VAL92 LEU93 VAL94 ASN95 GLY96 GLU97 ASP98 LEU99 THR100 ARG101 TYR102 ARG103 GLU104 MSE105 SER106 TYR107 LYS108 VAL109 THR110 GLU111 LEU112 LEU113 GLU114 GLU115 PHE116 SER117 PRO118 VAL119 VAL120 GLU121 ARG122 LEU123 GLY124 PHE125 ASP126 GLU127 ASN128 PHE129 VAL130 ASP131 LEU132 THR133 GLU134 MSE135 VAL136 GLU137 LYS138 ARG139 LEU140 GLN141 GLN142 LEU143 GLN144 SER145 ASP146 GLU147 LEU148 SER149 ALA150 VAL151 THR152 VAL153 SER154 GLY155 HIS156 VAL157 TYR158 ASN159 ASN160 GLN161 SER162 ILE163 ASN164 LEU165 LEU166 ASP167 VAL168 LEU169 HIS170 ILE171 ARG172 LEU173 LEU174 VAL175 GLY176 SER177 GLN178 ILE179 ALA180 ALA181 GLU182 MSE183 ARG184 GLU185 ALA186 MSE187 TYR188 ASN189 GLN190 LEU191 GLY192 LEU193 THR194 GLY195 CYS196 ALA197 GLY198 VAL199 ALA200 SER201 ASN202 LYS203 LEU204 LEU205 ALA206 LYS207 LEU208 VAL209 SER210 GLY211 VAL212 PHE213 LYS214 PRO215 ASN216 GLN217 GLN218 THR219 VAL220 LEU221 LEU222 PRO223 GLU224 SER225 CYS226 GLN227 HIS228 LEU229 ILE230 HIS231 SER232 LEU233 ASN234 HIS235 ILE236 LYS237 GLU238 ILE239 PRO240 GLY241 ILE242 GLY243 TYR244 LYS245 THR246 ALA247 LYS248 CYS249 LEU250 GLU251 ALA252 LEU253 GLY254 ILE255 ASN256 SER257 VAL258 ARG259 ASP260 LEU261 GLN262 THR263 PHE264 SER265 PRO266 LYS267 ILE268 LEU269 GLU270 LYS271 GLU272 LEU273 GLY274 ILE275 SER276 VAL277 ALA278 GLN279 ARG280 ILE281 GLN282 LYS283 LEU284 SER285 PHE286 GLY287 GLU288 ASP289 ASN290 SER291 PRO292 VAL293 ILE294 LEU295 SER296 GLY297 PRO298 PRO299 GLN300 SER301 PHE302 SER303 GLU304 GLU305 ASP306 SER307 PHE308 LYS309 LYS310 CYS311 SER312 SER313 GLU314 VAL315 GLU316 ALA317 LYS318 ASN319 LYS320 ILE321 GLU322 GLU323 LEU324 LEU325 ALA326 SER327 LEU328 LEU329 ASN330 ARG331 VAL332 CYS333 GLN334 ASP335 GLY336 ARG337 LYS338 PRO339 HIS340 THR341 VAL342 ARG343 LEU344 ILE345 ILE346 ARG347 ARG348 TYR349 SER350 GLY356 ARG357 GLU358 SER359 ARG360 GLN361 CYS362 PRO363 ILE364 PRO365 SER366 HIS367 VAL368 ILE369 GLN370 LYS371 LEU372 ASN376 TYR377 ASP378 VAL379 MSE380 THR381 PRO382 MSE383 VAL384 ASP385 ILE386 LEU387 MSE388 LYS389 LEU390 PHE391 ARG392 ASN393 MSE394 VAL395 ASN396 VAL397 LYS398 MSE399 PRO400 PHE401 HIS402 LEU403 THR404 LEU405 LEU406 SER407 VAL408 CYS409 PHE410 CYS411 ASN412 LEU413 LYS414
Unit 4 SER26 SER27 ARG28 VAL29 ILE30 VAL31 HIS32 VAL33 ASP34 LEU35 ASP36 CYS37 PHE38 TYR39 ALA40 GLN41 VAL42 GLU43 MSE44 ILE45 SER46 ASN47 PRO48 GLU49 LEU50 LYS51 ASP52 LYS53 PRO54 LEU55 GLY56 VAL57 GLN58 GLN59 LYS60 TYR61 LEU62 VAL63 VAL64 THR65 CYS66 ASN67 TYR68 GLU69 ALA70 ARG71 LYS72 LEU73 GLY74 VAL75 LYS76 LYS77 LEU78 MSE79 ASN80 VAL81 ARG82 ASP83 ALA84 LYS85 GLU86 LYS87 CYS88 PRO89 GLN90 LEU91 VAL92 LEU93 VAL94 ASN95 GLY96 GLU97 ASP98 LEU99 THR100 ARG101 TYR102 ARG103 GLU104 MSE105 SER106 TYR107 LYS108 VAL109 THR110 GLU111 LEU112 LEU113 GLU114 GLU115 PHE116 SER117 PRO118 VAL119 VAL120 GLU121 ARG122 LEU123 GLY124 PHE125 ASP126 GLU127 ASN128 PHE129 VAL130 ASP131 LEU132 THR133 GLU134 MSE135 VAL136 GLU137 LYS138 ARG139 LEU140 GLN141 GLN142 LEU143 GLN144 SER145 ASP146 GLU147 LEU148 SER149 ALA150 VAL151 THR152 VAL153 SER154 GLY155 HIS156 VAL157 TYR158 ASN159 ASN160 GLN161 SER162 ILE163 ASN164 LEU165 LEU166 ASP167 VAL168 LEU169 HIS170 ILE171 ARG172 LEU173 LEU174 VAL175 GLY176 SER177 GLN178 ILE179 ALA180 ALA181 GLU182 MSE183 ARG184 GLU185 ALA186 MSE187 TYR188 ASN189 GLN190 LEU191 GLY192 LEU193 THR194 GLY195 CYS196 ALA197 GLY198 VAL199 ALA200 SER201 ASN202 LYS203 LEU204 LEU205 ALA206 LYS207 LEU208 VAL209 SER210 GLY211 VAL212 PHE213 LYS214 PRO215 ASN216 GLN217 GLN218 THR219 VAL220 LEU221 LEU222 PRO223 GLU224 SER225 CYS226 GLN227 HIS228 LEU229 ILE230 HIS231 SER232 LEU233 ASN234 HIS235 ILE236 LYS237 GLU238 ILE239 PRO240 GLY241 ILE242 GLY243 TYR244 LYS245 THR246 ALA247 LYS248 CYS249 LEU250 GLU251 ALA252 LEU253 GLY254 ILE255 ASN256 SER257 VAL258 ARG259 ASP260 LEU261 GLN262 THR263 PHE264 SER265 PRO266 LYS267 ILE268 LEU269 GLU270 LYS271 GLU272 LEU273 GLY274 ILE275 SER276 VAL277 ALA278 GLN279 ARG280 ILE281 GLN282 LYS283 LEU284 SER285 PHE286 GLY287 GLU288 ASP289 ASN290 SER291 PRO292 VAL293 ILE294 LEU295 SER296 GLY297 PRO298 PRO299 GLN300 SER301 PHE302 SER303 GLU304 GLU305 ASP306 SER307 PHE308 LYS309 LYS310 CYS311 SER312 SER313 GLU314 VAL315 GLU316 ALA317 LYS318 ASN319 LYS320 ILE321 GLU322 GLU323 LEU324 LEU325 ALA326 SER327 LEU328 LEU329 ASN330 ARG331 VAL332 CYS333 GLN334 ASP335 GLY336 ARG337 LYS338 PRO339 HIS340 THR341 VAL342 ARG343 LEU344 ILE345 ILE346 ARG347 ARG348 TYR349 SER350 SER351 GLY356 ARG357 GLU358 SER359 ARG360 GLN361 CYS362 PRO363 ILE364 PRO365 SER366 HIS367 VAL368 ILE369 GLN370 LYS371 LEU372 ASN376 TYR377 ASP378 VAL379 MSE380 THR381 PRO382 MSE383 VAL384 ASP385 ILE386 LEU387 MSE388 LYS389 LEU390 PHE391 ARG392 ASN393 MSE394 VAL395 ASN396 VAL397 LYS398 MSE399 PRO400 PHE401 HIS402 LEU403 THR404 LEU405 LEU406 SER407 VAL408 CYS409 PHE410 CYS411 ASN412 LEU413 LYS414 ALA415

Other macromolecules
Unit 2 DG865 DT866 DG867 DG868 DA869 DT870 DG871 DA872 DG873
Unit 3 DC837 DA838 DT839 DT840 DC841 DT842 DC843 DA844 DT845 DC846 DC847 DA848 DC849
Unit 5 DG865 DT866 DG867 DG868 DA869 DT870 DG871 DA872 DG873
Unit 6 DC837 DA838 DT839 DT840 DC841 DT842 DC843 DA844 DT845 DC846 DC847 DA848 DC849

Ligands
Unit 7 CA421 GOL422 CA423 CA424 ADI425
Unit 8 CA1
Unit 9 CA421 CA422 CA423 ADI424
Unit 10 CA1

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany