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Sequence, Chains, Asymmetric and Biological Units

Title AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION A38N1DA
Keywords RNA, RIBOZYME, HAIRPIN RIBOZYME, N1-DEAZAADENOSINE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3GS1     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 32 638 12
2  RNA    B 12 264 0
3  RNA    C 32 638 12
4  RNA    D 19 395 0
5  RNA    D 32 638 12
6  Ligand   RNA (5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)- 3')  B 1 0 7
7  RNA    A 32 638 12
8  Ligand   RNA (5'- R(P*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3')  C 1 0 13
total       161 3211 68
Nucleic acids
Unit 1 U-5 C-4 C-3 C-2 A-1 G1 U2 C3 C4 A5 C6 C7 G8 G15 G16 C17 A18 G19 A20 G21 A22 A23 A24 C25 A26 C27 A28 C29 G30 A31 NCO101 SO4103
Unit 2 C2 G3 G4 U5 G6 A7 G8 A9 A10 G11 G12 G13
Unit 3 U-5 C-4 C-3 C-2 A-1 G1 U2 C3 C4 A5 C6 C7 G8 G15 G16 C17 A18 G19 A20 G21 A22 A23 A24 C25 A26 C27 A28 C29 G30 A31 NCO101 SO4103
Unit 4 U31 C32 G33 U34 G35 G36 U37 A38 C39 A40 U41 U42 A43 C44 C45 U46 G47 C48 C49
Unit 5 U-5 C-4 C-3 C-2 A-1 G1 U2 C3 C4 A5 C6 C7 G8 G15 G16 C17 A18 G19 A20 G21 A22 A23 A24 C25 A26 C27 A28 C29 G30 A31 NCO101 SO4103
Unit 7 U-5 C-4 C-3 C-2 A-1 G1 U2 C3 C4 A5 C6 C7 G8 G15 G16 C17 A18 G19 A20 G21 A22 A23 A24 C25 A26 C27 A28 C29 G30 A31 NCO101 SO4103
Ligands
Unit 6 NCO102
Unit 8 S9L14
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany