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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF HUMAN REV1-DNA-DNTP TERNARY COMPLEX
Keywords PROTEIN-DNA COMPLEX, DNA DAMAGE, DNA REPAIR, DNA SYNTHESIS, BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3GQC     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA REPAIR PROTEIN REV1  A 435 3318 0
2  Protein   DNA REPAIR PROTEIN REV1  B 440 3312 0
3  Protein   DNA REPAIR PROTEIN REV1  C 423 3189 0
4  Protein   DNA REPAIR PROTEIN REV1  D 433 3206 0
5  DNA    E 12 213 18
6  Other macromolecule    F 16 338 0
7  DNA    G 12 213 18
8  Other macromolecule    H 16 338 0
9  DNA    I 12 213 18
10  Other macromolecule    J 16 338 0
11  DNA    K 12 213 18
12  Other macromolecule    L 16 338 0
13  Ligand   DNA REPAIR PROTEIN REV1  A 5 0 32
14  Ligand   DNA REPAIR PROTEIN REV1  B 3 0 30
15  Ligand   DNA REPAIR PROTEIN REV1  C 4 0 31
16  Ligand   DNA REPAIR PROTEIN REV1  D 5 0 32
17 Water     96 0 96
total       1956 15229 293
Proteins
Unit 1 SER344 ASP345 CYS346 ASN347 PHE348 ILE349 SER350 ASN351 PHE352 TYR353 SER354 HIS355 SER356 ARG357 LEU358 HIS359 HIS360 ILE361 SER362 MET363 TRP364 LYS365 CYS366 GLU367 LEU368 THR369 GLU370 PHE371 VAL372 ASN373 THR374 LEU375 GLN376 ARG377 PHE383 PRO384 GLY385 ARG386 GLU387 LYS388 LEU389 LYS390 LYS391 GLN416 SER417 CYS418 ILE419 MET420 HIS421 VAL422 ASP423 MET424 ASP425 CYS426 PHE427 PHE428 VAL429 SER430 VAL431 GLY432 ILE433 ARG434 ASN435 ARG436 PRO437 ASP438 LEU439 LYS440 GLY441 LYS442 PRO443 VAL444 ALA445 VAL446 THR447 SER448 ASN449 ARG450 GLY451 THR452 GLY453 ARG454 ALA455 PRO456 LEU457 ARG458 PRO459 GLY460 ALA461 ASN462 PRO463 GLN464 LEU465 GLU466 TRP467 GLN468 TYR469 TYR470 GLN471 ASN472 LYS473 ILE474 LEU475 LYS476 GLY477 ILE499 ASP500 SER501 VAL502 LEU503 SER504 ARG505 ALA506 GLU507 ILE508 ALA509 SER510 CYS511 SER512 TYR513 GLU514 ALA515 ARG516 GLN517 LEU518 GLY519 ILE520 LYS521 ASN522 GLY523 MET524 PHE525 PHE526 GLY527 HIS528 ALA529 LYS530 GLN531 LEU532 CYS533 PRO534 ASN535 LEU536 GLN537 ALA538 VAL539 PRO540 TYR541 ASP542 PHE543 HIS544 ALA545 TYR546 LYS547 GLU548 VAL549 ALA550 GLN551 THR552 LEU553 TYR554 GLU555 THR556 LEU557 ALA558 SER559 TYR560 THR561 HIS562 ASN563 ILE564 GLU565 ALA566 VAL567 SER568 CYS569 ASP570 GLU571 ALA572 LEU573 VAL574 ASP575 ILE576 THR577 GLU578 ILE579 LEU580 ALA581 GLU582 THR583 LYS584 LEU585 THR586 PRO587 ASP588 GLU589 PHE590 ALA591 ASN592 ALA593 VAL594 ARG595 MET596 GLU597 ILE598 LYS599 ASP600 GLN601 THR602 LYS603 CYS604 ALA605 ALA606 SER607 VAL608 GLY609 ILE610 GLY611 SER612 ASN613 ILE614 LEU615 LEU616 ALA617 ARG618 MET619 ALA620 THR621 ARG622 LYS623 ALA624 LYS625 PRO626 ASP627 GLY628 GLN629 TYR630 HIS631 LEU632 LYS633 PRO634 GLU635 GLU636 VAL637 ASP638 ASP639 PHE640 ILE641 ARG642 GLY643 GLN644 LEU645 VAL646 THR647 ASN648 LEU649 PRO650 GLY651 VAL652 GLY653 HIS654 SER655 MET656 GLU657 SER658 LYS659 LEU660 ALA661 SER662 LEU663 GLY664 ILE665 LYS666 THR667 CYS668 GLY669 ASP670 LEU671 GLN672 TYR673 MET674 THR675 MET676 ALA677 LYS678 LEU679 GLN680 LYS681 GLU682 PHE683 GLY684 PRO685 LYS686 THR687 GLY688 GLN689 MET690 LEU691 TYR692 ARG693 PHE694 CYS695 ARG696 GLY697 LEU698 ASP699 ASP700 ARG701 PRO702 VAL703 ARG704 THR705 GLU706 LYS707 GLU708 ARG709 LYS710 SER711 VAL712 SER713 ALA714 GLU715 ILE716 ASN717 TYR718 GLY719 ILE720 ARG721 PHE722 THR723 GLN724 PRO725 LYS726 GLU727 ALA728 GLU729 ALA730 PHE731 LEU732 LEU733 SER734 LEU735 SER736 GLU737 GLU738 ILE739 GLN740 ARG741 ARG742 LEU743 GLU744 ALA745 THR746 GLY747 MET748 LYS749 GLY750 LYS751 ARG752 LEU753 THR754 LEU755 LYS756 ILE757 MET758 VAL759 ARG760 LYS761 PRO762 GLY763 ALA764 PRO765 VAL766 GLU767 THR768 ALA769 LYS770 PHE771 GLY772 GLY773 HIS774 GLY775 ILE776 CYS777 ASP778 ASN779 ILE780 ALA781 ARG782 THR783 VAL784 THR785 LEU786 ASP787 GLN788 ALA789 THR790 ASP791 ASN792 ALA793 LYS794 ILE795 ILE796 GLY797 LYS798 ALA799 MET800 LEU801 ASN802 MET803 PHE804 HIS805 THR806 MET807 LYS808 LEU809 ASN810 ILE811 SER812 ASP813 MET814 ARG815 GLY816 VAL817 GLY818 ILE819 HIS820 VAL821 ASN822 GLN823 LEU824 VAL825 PRO826 THR827 ASN828
Unit 2 SER344 ASP345 CYS346 ASN347 PHE348 ILE349 SER350 ASN351 PHE352 TYR353 SER354 HIS355 SER356 ARG357 LEU358 HIS359 HIS360 ILE361 SER362 MET363 TRP364 LYS365 CYS366 GLU367 LEU368 THR369 GLU370 PHE371 VAL372 ASN373 THR374 LEU375 GLN376 ARG377 GLN378 SER379 ASN380 GLY381 ILE382 PHE383 PRO384 GLY385 ARG386 GLU387 LYS388 LEU389 LYS390 LYS391 MET392 GLN416 SER417 CYS418 ILE419 MET420 HIS421 VAL422 ASP423 MET424 ASP425 CYS426 PHE427 PHE428 VAL429 SER430 VAL431 GLY432 ILE433 ARG434 ASN435 ARG436 PRO437 ASP438 LEU439 LYS440 GLY441 LYS442 PRO443 VAL444 ALA445 VAL446 THR447 SER448 ASN449 ARG450 GLY451 THR452 GLY453 ARG454 ALA455 PRO456 LEU457 ARG458 PRO459 GLY460 ALA461 ASN462 PRO463 GLN464 LEU465 GLU466 TRP467 GLN468 TYR469 TYR470 GLN471 ASN472 LYS473 ALA496 ASN497 GLY498 ILE499 ASP500 SER501 VAL502 LEU503 SER504 ARG505 ALA506 GLU507 ILE508 ALA509 SER510 CYS511 SER512 TYR513 GLU514 ALA515 ARG516 GLN517 LEU518 GLY519 ILE520 LYS521 ASN522 GLY523 MET524 PHE525 PHE526 GLY527 HIS528 ALA529 LYS530 GLN531 LEU532 CYS533 PRO534 ASN535 LEU536 GLN537 ALA538 VAL539 PRO540 TYR541 ASP542 PHE543 HIS544 ALA545 TYR546 LYS547 GLU548 VAL549 ALA550 GLN551 THR552 LEU553 TYR554 GLU555 THR556 LEU557 ALA558 SER559 TYR560 THR561 HIS562 ASN563 ILE564 GLU565 ALA566 VAL567 SER568 CYS569 ASP570 GLU571 ALA572 LEU573 VAL574 ASP575 ILE576 THR577 GLU578 ILE579 LEU580 ALA581 GLU582 THR583 LYS584 LEU585 THR586 PRO587 ASP588 GLU589 PHE590 ALA591 ASN592 ALA593 VAL594 ARG595 MET596 GLU597 ILE598 LYS599 ASP600 GLN601 THR602 LYS603 CYS604 ALA605 ALA606 SER607 VAL608 GLY609 ILE610 GLY611 SER612 ASN613 ILE614 LEU615 LEU616 ALA617 ARG618 MET619 ALA620 THR621 ARG622 LYS623 ALA624 LYS625 PRO626 ASP627 GLY628 GLN629 TYR630 HIS631 LEU632 LYS633 PRO634 GLU635 GLU636 VAL637 ASP638 ASP639 PHE640 ILE641 ARG642 GLY643 GLN644 LEU645 VAL646 THR647 ASN648 LEU649 PRO650 GLY651 VAL652 GLY653 HIS654 SER655 MET656 GLU657 SER658 LYS659 LEU660 ALA661 SER662 LEU663 GLY664 ILE665 LYS666 THR667 CYS668 GLY669 ASP670 LEU671 GLN672 TYR673 MET674 THR675 MET676 ALA677 LYS678 LEU679 GLN680 LYS681 GLU682 PHE683 GLY684 PRO685 LYS686 THR687 GLY688 GLN689 MET690 LEU691 TYR692 ARG693 PHE694 CYS695 ARG696 GLY697 LEU698 ASP699 ASP700 ARG701 PRO702 VAL703 ARG704 THR705 GLU706 LYS707 GLU708 ARG709 LYS710 SER711 VAL712 SER713 ALA714 GLU715 ILE716 ASN717 TYR718 GLY719 ILE720 ARG721 PHE722 THR723 GLN724 PRO725 LYS726 GLU727 ALA728 GLU729 ALA730 PHE731 LEU732 LEU733 SER734 LEU735 SER736 GLU737 GLU738 ILE739 GLN740 ARG741 ARG742 LEU743 GLU744 ALA745 THR746 GLY747 MET748 LYS749 GLY750 LYS751 ARG752 LEU753 THR754 LEU755 LYS756 ILE757 MET758 VAL759 ARG760 LYS761 PRO762 GLY763 ALA764 PRO765 VAL766 GLU767 THR768 ALA769 LYS770 PHE771 GLY772 GLY773 HIS774 GLY775 ILE776 CYS777 ASP778 ASN779 ILE780 ALA781 ARG782 THR783 VAL784 THR785 LEU786 ASP787 GLN788 ALA789 THR790 ASP791 ASN792 ALA793 LYS794 ILE795 ILE796 GLY797 LYS798 ALA799 MET800 LEU801 ASN802 MET803 PHE804 HIS805 THR806 MET807 LYS808 LEU809 ASN810 ILE811 SER812 ASP813 MET814 ARG815 GLY816 VAL817 GLY818 ILE819 HIS820 VAL821 ASN822 GLN823 LEU824 VAL825 PRO826 THR827 ASN828
Unit 3 SER344 ASP345 CYS346 ASN347 PHE348 ILE349 SER350 ASN351 PHE352 TYR353 SER354 HIS355 SER356 ARG357 LEU358 HIS359 HIS360 ILE361 SER362 MET363 TRP364 LYS365 CYS366 GLU367 LEU368 THR369 GLU370 PHE371 VAL372 ASN373 THR374 LEU375 GLN376 ARG377 GLN378 PHE383 PRO384 GLY385 GLN416 SER417 CYS418 ILE419 MET420 HIS421 VAL422 ASP423 MET424 ASP425 CYS426 PHE427 PHE428 VAL429 SER430 VAL431 GLY432 ILE433 ARG434 ASN435 ARG436 PRO437 ASP438 LEU439 LYS440 GLY441 LYS442 PRO443 VAL444 ALA445 VAL446 THR447 SER448 ASN449 ARG450 GLY451 THR452 GLY453 ARG454 ALA455 PRO456 LEU457 ARG458 PRO459 GLY460 ALA461 ASN462 PRO463 GLN464 LEU465 GLU466 TRP467 GLN468 TYR469 TYR470 GLN471 ASN472 ASP500 SER501 VAL502 LEU503 SER504 ARG505 ALA506 GLU507 ILE508 ALA509 SER510 CYS511 SER512 TYR513 GLU514 ALA515 ARG516 GLN517 LEU518 GLY519 ILE520 LYS521 ASN522 GLY523 MET524 PHE525 PHE526 GLY527 HIS528 ALA529 LYS530 GLN531 LEU532 CYS533 PRO534 ASN535 LEU536 GLN537 ALA538 VAL539 PRO540 TYR541 ASP542 PHE543 HIS544 ALA545 TYR546 LYS547 GLU548 VAL549 ALA550 GLN551 THR552 LEU553 TYR554 GLU555 THR556 LEU557 ALA558 SER559 TYR560 THR561 HIS562 ASN563 ILE564 GLU565 ALA566 VAL567 SER568 CYS569 ASP570 GLU571 ALA572 LEU573 VAL574 ASP575 ILE576 THR577 GLU578 ILE579 LEU580 ALA581 GLU582 THR583 LYS584 LEU585 THR586 PRO587 ASP588 GLU589 PHE590 ALA591 ASN592 ALA593 VAL594 ARG595 MET596 GLU597 ILE598 LYS599 ASP600 GLN601 THR602 LYS603 CYS604 ALA605 ALA606 SER607 VAL608 GLY609 ILE610 GLY611 SER612 ASN613 ILE614 LEU615 LEU616 ALA617 ARG618 MET619 ALA620 THR621 ARG622 LYS623 ALA624 LYS625 PRO626 ASP627 GLY628 GLN629 TYR630 HIS631 LEU632 LYS633 PRO634 GLU635 GLU636 VAL637 ASP638 ASP639 PHE640 ILE641 ARG642 GLY643 GLN644 LEU645 VAL646 THR647 ASN648 LEU649 PRO650 GLY651 VAL652 GLY653 HIS654 SER655 MET656 GLU657 SER658 LYS659 LEU660 ALA661 SER662 LEU663 GLY664 ILE665 LYS666 THR667 CYS668 GLY669 ASP670 LEU671 GLN672 TYR673 MET674 THR675 MET676 ALA677 LYS678 LEU679 GLN680 LYS681 GLU682 PHE683 GLY684 PRO685 LYS686 THR687 GLY688 GLN689 MET690 LEU691 TYR692 ARG693 PHE694 CYS695 ARG696 GLY697 LEU698 ASP699 ASP700 ARG701 PRO702 VAL703 ARG704 THR705 GLU706 LYS707 GLU708 ARG709 LYS710 SER711 VAL712 SER713 ALA714 GLU715 ILE716 ASN717 TYR718 GLY719 ILE720 ARG721 PHE722 THR723 GLN724 PRO725 LYS726 GLU727 ALA728 GLU729 ALA730 PHE731 LEU732 LEU733 SER734 LEU735 SER736 GLU737 GLU738 ILE739 GLN740 ARG741 ARG742 LEU743 GLU744 ALA745 THR746 GLY747 MET748 LYS749 GLY750 LYS751 ARG752 LEU753 THR754 LEU755 LYS756 ILE757 MET758 VAL759 ARG760 LYS761 PRO762 GLY763 ALA764 PRO765 VAL766 GLU767 THR768 ALA769 LYS770 PHE771 GLY772 GLY773 HIS774 GLY775 ILE776 CYS777 ASP778 ASN779 ILE780 ALA781 ARG782 THR783 VAL784 THR785 LEU786 ASP787 GLN788 ALA789 THR790 ASP791 ASN792 ALA793 LYS794 ILE795 ILE796 GLY797 LYS798 ALA799 MET800 LEU801 ASN802 MET803 PHE804 HIS805 THR806 MET807 LYS808 LEU809 ASN810 ILE811 SER812 ASP813 MET814 ARG815 GLY816 VAL817 GLY818 ILE819 HIS820 VAL821 ASN822 GLN823 LEU824 VAL825 PRO826 THR827
Unit 4 CYS346 ASN347 PHE348 ILE349 SER350 ASN351 PHE352 TYR353 SER354 HIS355 SER356 ARG357 LEU358 HIS359 HIS360 ILE361 SER362 MET363 TRP364 LYS365 CYS366 GLU367 LEU368 THR369 GLU370 PHE371 VAL372 ASN373 THR374 LEU375 GLN376 ARG377 GLN378 SER379 ASN380 GLY381 ILE382 PHE383 PRO384 GLY385 ARG386 GLU387 LYS388 LEU389 GLN416 SER417 CYS418 ILE419 MET420 HIS421 VAL422 ASP423 MET424 ASP425 CYS426 PHE427 PHE428 VAL429 SER430 VAL431 GLY432 ILE433 ARG434 ASN435 ARG436 PRO437 ASP438 LEU439 LYS440 GLY441 LYS442 PRO443 VAL444 ALA445 VAL446 THR447 SER448 ASN449 ARG450 GLY451 THR452 GLY453 ARG454 ALA455 PRO456 LEU457 ARG458 PRO459 GLY460 ALA461 ASN462 PRO463 GLN464 LEU465 GLU466 TRP467 GLN468 TYR469 TYR470 GLN471 ASN472 ALA496 ASN497 GLY498 ILE499 ASP500 SER501 VAL502 LEU503 SER504 ARG505 ALA506 GLU507 ILE508 ALA509 SER510 CYS511 SER512 TYR513 GLU514 ALA515 ARG516 GLN517 LEU518 GLY519 ILE520 LYS521 ASN522 GLY523 MET524 PHE525 PHE526 GLY527 HIS528 ALA529 LYS530 GLN531 LEU532 CYS533 PRO534 ASN535 LEU536 GLN537 ALA538 VAL539 PRO540 TYR541 ASP542 PHE543 HIS544 ALA545 TYR546 LYS547 GLU548 VAL549 ALA550 GLN551 THR552 LEU553 TYR554 GLU555 THR556 LEU557 ALA558 SER559 TYR560 THR561 HIS562 ASN563 ILE564 GLU565 ALA566 VAL567 SER568 CYS569 ASP570 GLU571 ALA572 LEU573 VAL574 ASP575 ILE576 THR577 GLU578 ILE579 LEU580 ALA581 GLU582 THR583 LYS584 LEU585 THR586 PRO587 ASP588 GLU589 PHE590 ALA591 ASN592 ALA593 VAL594 ARG595 MET596 GLU597 ILE598 LYS599 ASP600 GLN601 THR602 LYS603 CYS604 ALA605 ALA606 SER607 VAL608 GLY609 ILE610 GLY611 SER612 ASN613 ILE614 LEU615 LEU616 ALA617 ARG618 MET619 ALA620 THR621 ARG622 LYS623 ALA624 LYS625 PRO626 ASP627 GLY628 GLN629 TYR630 HIS631 LEU632 LYS633 PRO634 GLU635 GLU636 VAL637 ASP638 ASP639 PHE640 ILE641 ARG642 GLY643 GLN644 LEU645 VAL646 THR647 ASN648 LEU649 PRO650 GLY651 VAL652 GLY653 HIS654 SER655 MET656 GLU657 SER658 LYS659 LEU660 ALA661 SER662 LEU663 GLY664 ILE665 LYS666 THR667 CYS668 GLY669 ASP670 LEU671 GLN672 TYR673 MET674 THR675 MET676 ALA677 LYS678 LEU679 GLN680 LYS681 GLU682 PHE683 GLY684 PRO685 LYS686 THR687 GLY688 GLN689 MET690 LEU691 TYR692 ARG693 PHE694 CYS695 ARG696 GLY697 LEU698 ASP699 ASP700 ARG701 PRO702 VAL703 ARG704 THR705 GLU706 LYS707 GLU708 ARG709 LYS710 SER711 VAL712 SER713 ALA714 GLU715 ILE716 ASN717 TYR718 GLY719 ILE720 ARG721 PHE722 THR723 GLN724 PRO725 LYS726 GLU727 ALA728 GLU729 ALA730 PHE731 LEU732 LEU733 SER734 LEU735 SER736 GLU737 GLU738 ILE739 GLN740 ARG741 ARG742 LEU743 GLU744 ALA745 THR746 GLY747 MET748 LYS749 GLY750 LYS751 ARG752 LEU753 THR754 LEU755 LYS756 ILE757 MET758 VAL759 ARG760 LYS761 PRO762 GLY763 ALA764 PRO765 VAL766 GLU767 THR768 ALA769 LYS770 PHE771 GLY772 GLY773 HIS774 GLY775 ILE776 CYS777 ASP778 ASN779 ILE780 ALA781 ARG782 THR783 VAL784 THR785 LEU786 ASP787 GLN788 ALA789 THR790 ASP791 ASN792 ALA793 LYS794 ILE795 ILE796 GLY797 LYS798 ALA799 MET800 LEU801 ASN802 MET803 PHE804 HIS805 THR806 MET807 LYS808 LEU809 ASN810 ILE811 SER812 ASP813 MET814 ARG815 GLY816 VAL817 GLY818 ILE819 HIS820 VAL821 ASN822 GLN823 LEU824 VAL825 PRO826 THR827
Nucleic acids
Unit 5 DA1 DT2 DC3 DC4 DT5 DC6 DC7 DC8 DC9 DT10 DA11 DOC12
Unit 7 DA1 DT2 DC3 DC4 DT5 DC6 DC7 DC8 DC9 DT10 DA11 DOC12
Unit 9 DA1 DT2 DC3 DC4 DT5 DC6 DC7 DC8 DC9 DT10 DA11 DOC12
Unit 11 DA1 DT2 DC3 DC4 DT5 DC6 DC7 DC8 DC9 DT10 DA11 DOC12
Other macromolecules
Unit 6 DT1 DA2 DA3 DG4 DG5 DT6 DA7 DG8 DG9 DG10 DG11 DA12 DG13 DG14 DA15 DT16
Unit 8 DT1 DA2 DA3 DG4 DG5 DT6 DA7 DG8 DG9 DG10 DG11 DA12 DG13 DG14 DA15 DT16
Unit 10 DT1 DA2 DA3 DG4 DG5 DT6 DA7 DG8 DG9 DG10 DG11 DA12 DG13 DG14 DA15 DT16
Unit 12 DT1 DA2 DA3 DG4 DG5 DT6 DA7 DG8 DG9 DG10 DG11 DA12 DG13 DG14 DA15 DT16
Ligands
Unit 13 DCP101 MG201 MG202 MG209 MG211
Unit 14 DCP101 MG203 MG212
Unit 15 DCP101 MG205 MG206 MG213
Unit 16 DCP101 MG207 MG208 MG210 MG214
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany