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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF RECD2 WITH DNA AND ADPNP
Keywords ALPHA AND BETA PROTEIN, ATP-BINDING, NUCLEOTIDE-BINDING, HELICASE, HYDROLASE/DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3GPL     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   EXODEOXYRIBONUCLEASE V, SUBUNIT RECD, PUTATIVE  A 516 3887 0
2  Protein   EXODEOXYRIBONUCLEASE V, SUBUNIT RECD, PUTATIVE  B 516 3887 0
3  Other macromolecule   5'-D(*T*TP*TP*TP*TP*TP*TP*T)-3'  X 7 137 0
4  Other macromolecule   5'-D(*T*TP*TP*TP*TP*TP*TP*T)-3'  Y 7 137 0
5  Ligand   EXODEOXYRIBONUCLEASE V, SUBUNIT RECD, PUTATIVE  A 2 0 32
6  Ligand   EXODEOXYRIBONUCLEASE V, SUBUNIT RECD, PUTATIVE  B 2 0 32
7 Water     186 0 186
total       1236 8048 250
Proteins
Unit 1 ALA184 LEU185 ASP186 ARG187 LEU188 GLU189 LYS190 ASP191 LEU192 PHE193 THR194 LEU195 THR196 GLU197 VAL198 GLU199 GLY200 ILE201 GLY202 PHE203 LEU204 THR205 ALA206 ASP207 LYS208 LEU209 TRP210 GLN211 ALA212 ARG213 GLY214 GLY215 ALA216 LEU217 ASP218 ASP219 PRO220 ARG221 ARG222 LEU223 THR224 ALA225 ALA226 ALA227 VAL228 TYR229 ALA230 LEU231 GLN232 LEU233 ALA234 GLY235 THR236 GLN237 ALA238 GLY239 HIS240 SER241 PHE242 LEU243 PRO244 ARG245 SER246 ARG247 ALA248 GLU249 LYS250 GLY251 VAL252 VAL253 HIS254 TYR255 THR256 ARG257 VAL258 THR259 PRO260 GLY261 GLN262 ALA263 ARG264 LEU265 ALA266 VAL267 GLU268 THR269 ALA270 VAL271 GLU272 LEU273 GLY274 ARG275 LEU276 SER277 GLU278 ASP279 GLU293 GLY294 ARG295 ILE296 TYR297 LEU298 PRO299 HIS300 VAL301 LEU302 ARG303 ALA304 GLU305 LYS306 LYS307 LEU308 ALA309 SER310 LEU311 ILE312 ARG313 THR314 LEU315 LEU316 ALA317 THR318 PRO319 PRO320 ALA321 ASP322 GLY325 ASN326 ASP327 ASP328 TRP329 ALA330 VAL331 PRO332 LYS333 LYS334 ALA335 ARG336 LYS337 GLY338 LEU339 SER340 GLU341 GLU342 GLN343 ALA344 SER345 VAL346 LEU347 ASP348 GLN349 LEU350 ALA351 GLY352 HIS353 ARG354 LEU355 VAL356 VAL357 LEU358 THR359 GLY360 GLY361 PRO362 GLY363 THR364 GLY365 LYS366 SER367 THR368 THR369 THR370 LYS371 ALA372 VAL373 ALA374 ASP375 LEU376 ALA377 GLU378 SER379 LEU380 GLY381 LEU382 GLU383 VAL384 GLY385 LEU386 CYS387 ALA388 PRO389 THR390 GLY391 LYS392 ALA393 ALA394 ARG395 ARG396 LEU397 GLY398 GLU399 VAL400 THR401 GLY402 ARG403 THR404 ALA405 SER406 THR407 VAL408 HIS409 ARG410 LEU411 LEU412 GLY413 TYR414 GLY415 PRO416 GLN417 GLY418 PHE419 ARG420 HIS421 ASN422 HIS423 LEU424 GLU425 PRO426 ALA427 PRO428 TYR429 ASP430 LEU431 LEU432 ILE433 VAL434 ASP435 GLU436 VAL437 SER438 MET439 MET440 GLY441 ASP442 ALA443 LEU444 MET445 LEU446 SER447 LEU448 LEU449 ALA450 ALA451 VAL452 PRO453 PRO454 GLY455 ALA456 ARG457 VAL458 LEU459 LEU460 VAL461 GLY462 ASP463 THR464 ASP465 GLN466 LEU467 PRO468 PRO469 VAL470 ASP471 ALA472 GLY473 LEU474 PRO475 LEU476 LEU477 ALA478 LEU479 ALA480 GLN481 ALA482 ALA483 PRO484 THR485 ILE486 LYS487 LEU488 THR489 GLN490 VAL491 TYR492 ARG493 GLN494 ALA495 ALA496 LYS497 ASN498 PRO499 ILE500 ILE501 GLN502 ALA503 ALA504 HIS505 GLY506 LEU507 LEU508 HIS509 GLY510 GLU511 ALA512 PRO513 ALA514 TRP515 GLY516 ASP517 LYS518 ARG519 LEU520 ASN521 LEU522 THR523 GLU524 ILE525 GLU526 PRO527 ASP528 GLY529 GLY530 ALA531 ARG532 ARG533 VAL534 ALA535 LEU536 MET537 VAL538 ARG539 GLU540 LEU541 GLY542 GLY543 PRO544 GLY545 ALA546 VAL547 GLN548 VAL549 LEU550 THR551 PRO552 MET553 ARG554 LYS555 GLY556 PRO557 LEU558 GLY559 MET560 ASP561 HIS562 LEU563 ASN564 TYR565 HIS566 LEU567 GLN568 ALA569 LEU570 PHE571 ASN572 PRO573 GLY574 GLU575 GLY576 GLY577 VAL578 ARG579 ILE580 ALA581 GLU582 GLY583 GLU584 ALA585 ARG586 PRO587 GLY588 ASP589 THR590 VAL591 VAL592 GLN593 THR594 LYS595 ASN596 ASP597 TYR598 ASN599 ASN600 GLU601 ILE602 PHE603 ASN604 GLY605 THR606 LEU607 GLY608 MET609 VAL610 LEU611 LYS612 ALA613 GLU614 GLY615 ALA616 ARG617 LEU618 THR619 VAL620 ASP621 PHE622 ASP623 GLY624 ASN625 VAL626 VAL627 GLU628 LEU629 THR630 GLY631 ALA632 GLU633 LEU634 PHE635 ASN636 LEU637 GLN638 LEU639 GLY640 TYR641 ALA642 LEU643 THR644 VAL645 HIS646 ARG647 ALA648 GLN649 GLY650 SER651 GLU652 TRP653 GLY654 THR655 VAL656 LEU657 GLY658 VAL659 LEU660 HIS661 GLU662 ALA663 HIS664 MET665 PRO666 MET667 LEU668 SER669 ARG670 ASN671 LEU672 VAL673 TYR674 THR675 ALA676 LEU677 THR678 ARG679 ALA680 ARG681 ASP682 ARG683 PHE684 PHE685 SER686 ALA687 GLY688 SER689 ALA690 SER691 ALA692 TRP693 GLN694 ILE695 ALA696 ALA697 ALA698 ARG699 GLN700 ARG701 GLU702 ALA703 ARG704 ASN705 THR706 ALA707 LEU708 LEU709 GLU710 ARG711 ILE712 ARG713 ALA714
Unit 2 ALA184 LEU185 ASP186 ARG187 LEU188 GLU189 LYS190 ASP191 LEU192 PHE193 THR194 LEU195 THR196 GLU197 VAL198 GLU199 GLY200 ILE201 GLY202 PHE203 LEU204 THR205 ALA206 ASP207 LYS208 LEU209 TRP210 GLN211 ALA212 ARG213 GLY214 GLY215 ALA216 LEU217 ASP218 ASP219 PRO220 ARG221 ARG222 LEU223 THR224 ALA225 ALA226 ALA227 VAL228 TYR229 ALA230 LEU231 GLN232 LEU233 ALA234 GLY235 THR236 GLN237 ALA238 GLY239 HIS240 SER241 PHE242 LEU243 PRO244 ARG245 SER246 ARG247 ALA248 GLU249 LYS250 GLY251 VAL252 VAL253 HIS254 TYR255 THR256 ARG257 VAL258 THR259 PRO260 GLY261 GLN262 ALA263 ARG264 LEU265 ALA266 VAL267 GLU268 THR269 ALA270 VAL271 GLU272 LEU273 GLY274 ARG275 LEU276 SER277 GLU278 ASP279 GLU293 GLY294 ARG295 ILE296 TYR297 LEU298 PRO299 HIS300 VAL301 LEU302 ARG303 ALA304 GLU305 LYS306 LYS307 LEU308 ALA309 SER310 LEU311 ILE312 ARG313 THR314 LEU315 LEU316 ALA317 THR318 PRO319 PRO320 ALA321 ASP322 GLY325 ASN326 ASP327 ASP328 TRP329 ALA330 VAL331 PRO332 LYS333 LYS334 ALA335 ARG336 LYS337 GLY338 LEU339 SER340 GLU341 GLU342 GLN343 ALA344 SER345 VAL346 LEU347 ASP348 GLN349 LEU350 ALA351 GLY352 HIS353 ARG354 LEU355 VAL356 VAL357 LEU358 THR359 GLY360 GLY361 PRO362 GLY363 THR364 GLY365 LYS366 SER367 THR368 THR369 THR370 LYS371 ALA372 VAL373 ALA374 ASP375 LEU376 ALA377 GLU378 SER379 LEU380 GLY381 LEU382 GLU383 VAL384 GLY385 LEU386 CYS387 ALA388 PRO389 THR390 GLY391 LYS392 ALA393 ALA394 ARG395 ARG396 LEU397 GLY398 GLU399 VAL400 THR401 GLY402 ARG403 THR404 ALA405 SER406 THR407 VAL408 HIS409 ARG410 LEU411 LEU412 GLY413 TYR414 GLY415 PRO416 GLN417 GLY418 PHE419 ARG420 HIS421 ASN422 HIS423 LEU424 GLU425 PRO426 ALA427 PRO428 TYR429 ASP430 LEU431 LEU432 ILE433 VAL434 ASP435 GLU436 VAL437 SER438 MET439 MET440 GLY441 ASP442 ALA443 LEU444 MET445 LEU446 SER447 LEU448 LEU449 ALA450 ALA451 VAL452 PRO453 PRO454 GLY455 ALA456 ARG457 VAL458 LEU459 LEU460 VAL461 GLY462 ASP463 THR464 ASP465 GLN466 LEU467 PRO468 PRO469 VAL470 ASP471 ALA472 GLY473 LEU474 PRO475 LEU476 LEU477 ALA478 LEU479 ALA480 GLN481 ALA482 ALA483 PRO484 THR485 ILE486 LYS487 LEU488 THR489 GLN490 VAL491 TYR492 ARG493 GLN494 ALA495 ALA496 LYS497 ASN498 PRO499 ILE500 ILE501 GLN502 ALA503 ALA504 HIS505 GLY506 LEU507 LEU508 HIS509 GLY510 GLU511 ALA512 PRO513 ALA514 TRP515 GLY516 ASP517 LYS518 ARG519 LEU520 ASN521 LEU522 THR523 GLU524 ILE525 GLU526 PRO527 ASP528 GLY529 GLY530 ALA531 ARG532 ARG533 VAL534 ALA535 LEU536 MET537 VAL538 ARG539 GLU540 LEU541 GLY542 GLY543 PRO544 GLY545 ALA546 VAL547 GLN548 VAL549 LEU550 THR551 PRO552 MET553 ARG554 LYS555 GLY556 PRO557 LEU558 GLY559 MET560 ASP561 HIS562 LEU563 ASN564 TYR565 HIS566 LEU567 GLN568 ALA569 LEU570 PHE571 ASN572 PRO573 GLY574 GLU575 GLY576 GLY577 VAL578 ARG579 ILE580 ALA581 GLU582 GLY583 GLU584 ALA585 ARG586 PRO587 GLY588 ASP589 THR590 VAL591 VAL592 GLN593 THR594 LYS595 ASN596 ASP597 TYR598 ASN599 ASN600 GLU601 ILE602 PHE603 ASN604 GLY605 THR606 LEU607 GLY608 MET609 VAL610 LEU611 LYS612 ALA613 GLU614 GLY615 ALA616 ARG617 LEU618 THR619 VAL620 ASP621 PHE622 ASP623 GLY624 ASN625 VAL626 VAL627 GLU628 LEU629 THR630 GLY631 ALA632 GLU633 LEU634 PHE635 ASN636 LEU637 GLN638 LEU639 GLY640 TYR641 ALA642 LEU643 THR644 VAL645 HIS646 ARG647 ALA648 GLN649 GLY650 SER651 GLU652 TRP653 GLY654 THR655 VAL656 LEU657 GLY658 VAL659 LEU660 HIS661 GLU662 ALA663 HIS664 MET665 PRO666 MET667 LEU668 SER669 ARG670 ASN671 LEU672 VAL673 TYR674 THR675 ALA676 LEU677 THR678 ARG679 ALA680 ARG681 ASP682 ARG683 PHE684 PHE685 SER686 ALA687 GLY688 SER689 ALA690 SER691 ALA692 TRP693 GLN694 ILE695 ALA696 ALA697 ALA698 ARG699 GLN700 ARG701 GLU702 ALA703 ARG704 ASN705 THR706 ALA707 LEU708 LEU709 GLU710 ARG711 ILE712 ARG713 ALA714
Other macromolecules
Unit 3 DT2 DT3 DT4 DT5 DT6 DT7 DT8
Unit 4 DT2 DT3 DT4 DT5 DT6 DT7 DT8
Ligands
Unit 5 MG800 ANP801
Unit 6 MG800 ANP801
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany