3GIP - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF N-ACYL-D-GLUTAMATE DEACYLASE FROM BORDETELLA BRONCHISEPTICA COMPLEXED WITH ZINC, ACETATE AND FORMATE IONS.
• Keywords: N-ACYL-D-GLUTAMATE DEACYLASE, AMIDOHYDROLASE FAMILY, CRYSTAL STRUCTURE, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3GIP	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	N-ACYL-D-GLUTAMATE DEACYLASE	A	474	3555	0
2	Protein	N-ACYL-D-GLUTAMATE DEACYLASE	B	474	3555	0
3	Ligand	N-ACYL-D-GLUTAMATE DEACYLASE	A	4	0	11
4	Ligand	N-ACYL-D-GLUTAMATE DEACYLASE	B	4	0	11
5	Water			684	0	684
total				1640	7110	706

Proteins

Unit 1

GLU 5 LYS 6 LEU 7 ASP 8 PHE 9 LYS 10 ILE 11 THR 12 GLY 13 GLY 14 TRP 15 ILE 16 ILE 17 ASP 18 GLY 19 THR 20 GLY 21 ALA 22 PRO 23 ARG 24 ARG 25 ARG 26 ALA 27 ASP 28 LEU 29 GLY 30 VAL 31 ARG 32 ASP 33 GLY 34 ARG 35 ILE 36 ALA 37 ALA 38 ILE 39 GLY 40 GLU 41 LEU 42 GLY 43 ALA 44 HIS 45 PRO 46 ALA 47 ARG 48 HIS 49 ALA 50 TRP 51 ASP 52 ALA 53 SER 54 GLY 55 LYS 56 ILE 57 VAL 58 ALA 59 PRO 60 GLY 61 PHE 62 ILE 63 ASP 64 VAL 65 HIS 66 GLY 67 HIS 68 ASP 69 ASP 70 LEU 71 MET 72 PHE 73 VAL 74 GLU 75 LYS 76 PRO 77 ASP 78 LEU 79 ARG 80 TRP 81 LYS 82 THR 83 SER 84 GLN 85 GLY 86 ILE 87 THR 88 THR 89 VAL 90 VAL 91 VAL 92 GLY 93 ASN 94 CYS 95 GLY 96 VAL 97 SER 98 ALA 99 ALA 100 PRO 101 ALA 102 PRO 103 LEU 104 PRO 105 GLY 106 ASN 107 THR 108 ALA 109 ALA 110 ALA 111 LEU 112 ALA 113 LEU 114 LEU 115 GLY 116 GLU 117 THR 118 PRO 119 LEU 120 PHE 121 ALA 122 ASP 123 VAL 124 PRO 125 ALA 126 TYR 127 PHE 128 ALA 129 ALA 130 LEU 131 ASP 132 ALA 133 GLN 134 ARG 135 PRO 136 MET 137 ILE 138 ASN 139 VAL 140 ALA 141 ALA 142 LEU 143 VAL 144 GLY 145 HIS 146 ALA 147 ASN 148 LEU 149 ARG 150 LEU 151 ALA 152 ALA 153 MET 154 ARG 155 ASP 156 PRO 157 GLN 158 ALA 159 ALA 160 PRO 161 THR 162 ALA 163 ALA 164 GLU 165 GLN 166 GLN 167 ALA 168 MET 169 GLN 170 ASP 171 MET 172 LEU 173 GLN 174 ALA 175 ALA 176 LEU 177 GLU 178 ALA 179 GLY 180 ALA 181 VAL 182 GLY 183 PHE 184 SER 185 THR 186 GLY 187 LEU 188 ALA 189 TYR 190 GLN 191 PRO 192 GLY 193 ALA 194 VAL 195 ALA 196 GLN 197 ALA 198 ALA 199 GLU 200 LEU 201 GLU 202 GLY 203 LEU 204 ALA 205 ARG 206 VAL 207 ALA 208 ALA 209 GLU 210 ARG 211 ARG 212 ARG 213 LEU 214 HIS 215 THR 216 SER 217 HIS 218 ILE 219 ARG 220 ASN 221 GLU 222 ALA 223 ASP 224 GLY 225 VAL 226 GLU 227 ALA 228 ALA 229 VAL 230 GLU 231 GLU 232 VAL 233 LEU 234 ALA 235 ILE 236 GLY 237 ARG 238 GLY 239 THR 240 GLY 241 CYS 242 ALA 243 THR 244 VAL 245 VAL 246 SER 247 HIS 248 HIS 249 LYS 250 CYS 251 MET 252 MET 253 PRO 254 GLN 255 ASN 256 TRP 257 GLY 258 ARG 259 SER 260 ARG 261 ALA 262 THR 263 LEU 264 ALA 265 ASN 266 ILE 267 ASP 268 ARG 269 ALA 270 ARG 271 GLU 272 GLN 273 GLY 274 VAL 275 GLU 276 VAL 277 ALA 278 LEU 279 ASP 280 ILE 281 TYR 282 PRO 283 TYR 284 PRO 285 GLY 286 SER 287 SER 288 THR 289 ILE 290 LEU 291 ILE 292 PRO 293 GLU 294 ARG 295 ALA 296 GLU 297 THR 298 ILE 299 ASP 300 ASP 301 ILE 302 ARG 303 ILE 304 THR 305 TRP 306 SER 307 THR 308 PRO 309 HIS 310 PRO 311 GLU 312 CYS 313 SER 314 GLY 315 GLU 316 TYR 317 LEU 318 ALA 319 ASP 320 ILE 321 ALA 322 ALA 323 ARG 324 TRP 325 GLY 326 CYS 327 ASP 328 LYS 329 THR 330 THR 331 ALA 332 ALA 333 ARG 334 ARG 335 LEU 336 ALA 337 PRO 338 ALA 339 GLY 340 ALA 341 ILE 342 TYR 343 PHE 344 ALA 345 MET 346 ASP 347 GLU 348 ASP 349 GLU 350 VAL 351 LYS 352 ARG 353 ILE 354 PHE 355 GLN 356 HIS 357 PRO 358 CYS 359 CYS 360 MET 361 VAL 362 GLY 363 SER 364 ASP 365 GLY 366 LEU 367 PRO 368 ASN 369 ASP 370 ALA 371 ARG 372 PRO 373 HIS 374 PRO 375 ARG 376 LEU 377 TRP 378 GLY 379 SER 380 PHE 381 THR 382 ARG 383 VAL 384 LEU 385 GLY 386 ARG 387 TYR 388 VAL 389 ARG 390 GLU 391 ALA 392 ARG 393 LEU 394 MET 395 THR 396 LEU 397 GLU 398 GLN 399 ALA 400 VAL 401 ALA 402 ARG 403 MET 404 THR 405 ALA 406 LEU 407 PRO 408 ALA 409 ARG 410 VAL 411 PHE 412 GLY 413 PHE 414 ALA 415 GLU 416 ARG 417 GLY 418 VAL 419 LEU 420 GLN 421 PRO 422 GLY 423 ALA 424 TRP 425 ALA 426 ASP 427 VAL 428 VAL 429 VAL 430 PHE 431 ASP 432 PRO 433 ASP 434 THR 435 VAL 436 ALA 437 ASP 438 ARG 439 ALA 440 THR 441 TRP 442 ASP 443 GLU 444 PRO 445 THR 446 LEU 447 ALA 448 SER 449 VAL 450 GLY 451 ILE 452 ALA 453 GLY 454 VAL 455 LEU 456 VAL 457 ASN 458 GLY 459 ALA 460 GLU 461 VAL 462 PHE 463 PRO 464 GLN 465 PRO 466 PRO 467 ALA 468 ASP 469 GLY 470 ARG 471 PRO 472 GLY 473 GLN 474 VAL 475 LEU 476 ARG 477 ALA 478

Unit 2

GLU 5 LYS 6 LEU 7 ASP 8 PHE 9 LYS 10 ILE 11 THR 12 GLY 13 GLY 14 TRP 15 ILE 16 ILE 17 ASP 18 GLY 19 THR 20 GLY 21 ALA 22 PRO 23 ARG 24 ARG 25 ARG 26 ALA 27 ASP 28 LEU 29 GLY 30 VAL 31 ARG 32 ASP 33 GLY 34 ARG 35 ILE 36 ALA 37 ALA 38 ILE 39 GLY 40 GLU 41 LEU 42 GLY 43 ALA 44 HIS 45 PRO 46 ALA 47 ARG 48 HIS 49 ALA 50 TRP 51 ASP 52 ALA 53 SER 54 GLY 55 LYS 56 ILE 57 VAL 58 ALA 59 PRO 60 GLY 61 PHE 62 ILE 63 ASP 64 VAL 65 HIS 66 GLY 67 HIS 68 ASP 69 ASP 70 LEU 71 MET 72 PHE 73 VAL 74 GLU 75 LYS 76 PRO 77 ASP 78 LEU 79 ARG 80 TRP 81 LYS 82 THR 83 SER 84 GLN 85 GLY 86 ILE 87 THR 88 THR 89 VAL 90 VAL 91 VAL 92 GLY 93 ASN 94 CYS 95 GLY 96 VAL 97 SER 98 ALA 99 ALA 100 PRO 101 ALA 102 PRO 103 LEU 104 PRO 105 GLY 106 ASN 107 THR 108 ALA 109 ALA 110 ALA 111 LEU 112 ALA 113 LEU 114 LEU 115 GLY 116 GLU 117 THR 118 PRO 119 LEU 120 PHE 121 ALA 122 ASP 123 VAL 124 PRO 125 ALA 126 TYR 127 PHE 128 ALA 129 ALA 130 LEU 131 ASP 132 ALA 133 GLN 134 ARG 135 PRO 136 MET 137 ILE 138 ASN 139 VAL 140 ALA 141 ALA 142 LEU 143 VAL 144 GLY 145 HIS 146 ALA 147 ASN 148 LEU 149 ARG 150 LEU 151 ALA 152 ALA 153 MET 154 ARG 155 ASP 156 PRO 157 GLN 158 ALA 159 ALA 160 PRO 161 THR 162 ALA 163 ALA 164 GLU 165 GLN 166 GLN 167 ALA 168 MET 169 GLN 170 ASP 171 MET 172 LEU 173 GLN 174 ALA 175 ALA 176 LEU 177 GLU 178 ALA 179 GLY 180 ALA 181 VAL 182 GLY 183 PHE 184 SER 185 THR 186 GLY 187 LEU 188 ALA 189 TYR 190 GLN 191 PRO 192 GLY 193 ALA 194 VAL 195 ALA 196 GLN 197 ALA 198 ALA 199 GLU 200 LEU 201 GLU 202 GLY 203 LEU 204 ALA 205 ARG 206 VAL 207 ALA 208 ALA 209 GLU 210 ARG 211 ARG 212 ARG 213 LEU 214 HIS 215 THR 216 SER 217 HIS 218 ILE 219 ARG 220 ASN 221 GLU 222 ALA 223 ASP 224 GLY 225 VAL 226 GLU 227 ALA 228 ALA 229 VAL 230 GLU 231 GLU 232 VAL 233 LEU 234 ALA 235 ILE 236 GLY 237 ARG 238 GLY 239 THR 240 GLY 241 CYS 242 ALA 243 THR 244 VAL 245 VAL 246 SER 247 HIS 248 HIS 249 LYS 250 CYS 251 MET 252 MET 253 PRO 254 GLN 255 ASN 256 TRP 257 GLY 258 ARG 259 SER 260 ARG 261 ALA 262 THR 263 LEU 264 ALA 265 ASN 266 ILE 267 ASP 268 ARG 269 ALA 270 ARG 271 GLU 272 GLN 273 GLY 274 VAL 275 GLU 276 VAL 277 ALA 278 LEU 279 ASP 280 ILE 281 TYR 282 PRO 283 TYR 284 PRO 285 GLY 286 SER 287 SER 288 THR 289 ILE 290 LEU 291 ILE 292 PRO 293 GLU 294 ARG 295 ALA 296 GLU 297 THR 298 ILE 299 ASP 300 ASP 301 ILE 302 ARG 303 ILE 304 THR 305 TRP 306 SER 307 THR 308 PRO 309 HIS 310 PRO 311 GLU 312 CYS 313 SER 314 GLY 315 GLU 316 TYR 317 LEU 318 ALA 319 ASP 320 ILE 321 ALA 322 ALA 323 ARG 324 TRP 325 GLY 326 CYS 327 ASP 328 LYS 329 THR 330 THR 331 ALA 332 ALA 333 ARG 334 ARG 335 LEU 336 ALA 337 PRO 338 ALA 339 GLY 340 ALA 341 ILE 342 TYR 343 PHE 344 ALA 345 MET 346 ASP 347 GLU 348 ASP 349 GLU 350 VAL 351 LYS 352 ARG 353 ILE 354 PHE 355 GLN 356 HIS 357 PRO 358 CYS 359 CYS 360 MET 361 VAL 362 GLY 363 SER 364 ASP 365 GLY 366 LEU 367 PRO 368 ASN 369 ASP 370 ALA 371 ARG 372 PRO 373 HIS 374 PRO 375 ARG 376 LEU 377 TRP 378 GLY 379 SER 380 PHE 381 THR 382 ARG 383 VAL 384 LEU 385 GLY 386 ARG 387 TYR 388 VAL 389 ARG 390 GLU 391 ALA 392 ARG 393 LEU 394 MET 395 THR 396 LEU 397 GLU 398 GLN 399 ALA 400 VAL 401 ALA 402 ARG 403 MET 404 THR 405 ALA 406 LEU 407 PRO 408 ALA 409 ARG 410 VAL 411 PHE 412 GLY 413 PHE 414 ALA 415 GLU 416 ARG 417 GLY 418 VAL 419 LEU 420 GLN 421 PRO 422 GLY 423 ALA 424 TRP 425 ALA 426 ASP 427 VAL 428 VAL 429 VAL 430 PHE 431 ASP 432 PRO 433 ASP 434 THR 435 VAL 436 ALA 437 ASP 438 ARG 439 ALA 440 THR 441 TRP 442 ASP 443 GLU 444 PRO 445 THR 446 LEU 447 ALA 448 SER 449 VAL 450 GLY 451 ILE 452 ALA 453 GLY 454 VAL 455 LEU 456 VAL 457 ASN 458 GLY 459 ALA 460 GLU 461 VAL 462 PHE 463 PRO 464 GLN 465 PRO 466 PRO 467 ALA 468 ASP 469 GLY 470 ARG 471 PRO 472 GLY 473 GLN 474 VAL 475 LEU 476 ARG 477 ALA 478

Ligands

Unit 3	ACY 481 FMT 482 FMT 483 ZN 484
Unit 4	ACY 481 FMT 482 FMT 483 ZN 484