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Title | CRYSTAL STRUCTURE OF N-ACYL-D-GLUTAMATE DEACYLASE FROM BORDETELLA BRONCHISEPTICA COMPLEXED WITH ZINC, ACETATE AND FORMATE IONS. | |
Keywords | N-ACYL-D-GLUTAMATE DEACYLASE, AMIDOHYDROLASE FAMILY, CRYSTAL STRUCTURE, HYDROLASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3GIP | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | N-ACYL-D-GLUTAMATE DEACYLASE | A | 474 | 3555 | 0 |
2 | Protein | N-ACYL-D-GLUTAMATE DEACYLASE | B | 474 | 3555 | 0 |
3 | Ligand | N-ACYL-D-GLUTAMATE DEACYLASE | A | 4 | 0 | 11 |
4 | Ligand | N-ACYL-D-GLUTAMATE DEACYLASE | B | 4 | 0 | 11 |
5 | Water | 684 | 0 | 684 | ||
total | 1640 | 7110 | 706 |
Unit 1 | GLU5 LYS6 LEU7 ASP8 PHE9 LYS10 ILE11 THR12 GLY13 GLY14 TRP15 ILE16 ILE17 ASP18 GLY19 THR20 GLY21 ALA22 PRO23 ARG24 ARG25 ARG26 ALA27 ASP28 LEU29 GLY30 VAL31 ARG32 ASP33 GLY34 ARG35 ILE36 ALA37 ALA38 ILE39 GLY40 GLU41 LEU42 GLY43 ALA44 HIS45 PRO46 ALA47 ARG48 HIS49 ALA50 TRP51 ASP52 ALA53 SER54 GLY55 LYS56 ILE57 VAL58 ALA59 PRO60 GLY61 PHE62 ILE63 ASP64 VAL65 HIS66 GLY67 HIS68 ASP69 ASP70 LEU71 MET72 PHE73 VAL74 GLU75 LYS76 PRO77 ASP78 LEU79 ARG80 TRP81 LYS82 THR83 SER84 GLN85 GLY86 ILE87 THR88 THR89 VAL90 VAL91 VAL92 GLY93 ASN94 CYS95 GLY96 VAL97 SER98 ALA99 ALA100 PRO101 ALA102 PRO103 LEU104 PRO105 GLY106 ASN107 THR108 ALA109 ALA110 ALA111 LEU112 ALA113 LEU114 LEU115 GLY116 GLU117 THR118 PRO119 LEU120 PHE121 ALA122 ASP123 VAL124 PRO125 ALA126 TYR127 PHE128 ALA129 ALA130 LEU131 ASP132 ALA133 GLN134 ARG135 PRO136 MET137 ILE138 ASN139 VAL140 ALA141 ALA142 LEU143 VAL144 GLY145 HIS146 ALA147 ASN148 LEU149 ARG150 LEU151 ALA152 ALA153 MET154 ARG155 ASP156 PRO157 GLN158 ALA159 ALA160 PRO161 THR162 ALA163 ALA164 GLU165 GLN166 GLN167 ALA168 MET169 GLN170 ASP171 MET172 LEU173 GLN174 ALA175 ALA176 LEU177 GLU178 ALA179 GLY180 ALA181 VAL182 GLY183 PHE184 SER185 THR186 GLY187 LEU188 ALA189 TYR190 GLN191 PRO192 GLY193 ALA194 VAL195 ALA196 GLN197 ALA198 ALA199 GLU200 LEU201 GLU202 GLY203 LEU204 ALA205 ARG206 VAL207 ALA208 ALA209 GLU210 ARG211 ARG212 ARG213 LEU214 HIS215 THR216 SER217 HIS218 ILE219 ARG220 ASN221 GLU222 ALA223 ASP224 GLY225 VAL226 GLU227 ALA228 ALA229 VAL230 GLU231 GLU232 VAL233 LEU234 ALA235 ILE236 GLY237 ARG238 GLY239 THR240 GLY241 CYS242 ALA243 THR244 VAL245 VAL246 SER247 HIS248 HIS249 LYS250 CYS251 MET252 MET253 PRO254 GLN255 ASN256 TRP257 GLY258 ARG259 SER260 ARG261 ALA262 THR263 LEU264 ALA265 ASN266 ILE267 ASP268 ARG269 ALA270 ARG271 GLU272 GLN273 GLY274 VAL275 GLU276 VAL277 ALA278 LEU279 ASP280 ILE281 TYR282 PRO283 TYR284 PRO285 GLY286 SER287 SER288 THR289 ILE290 LEU291 ILE292 PRO293 GLU294 ARG295 ALA296 GLU297 THR298 ILE299 ASP300 ASP301 ILE302 ARG303 ILE304 THR305 TRP306 SER307 THR308 PRO309 HIS310 PRO311 GLU312 CYS313 SER314 GLY315 GLU316 TYR317 LEU318 ALA319 ASP320 ILE321 ALA322 ALA323 ARG324 TRP325 GLY326 CYS327 ASP328 LYS329 THR330 THR331 ALA332 ALA333 ARG334 ARG335 LEU336 ALA337 PRO338 ALA339 GLY340 ALA341 ILE342 TYR343 PHE344 ALA345 MET346 ASP347 GLU348 ASP349 GLU350 VAL351 LYS352 ARG353 ILE354 PHE355 GLN356 HIS357 PRO358 CYS359 CYS360 MET361 VAL362 GLY363 SER364 ASP365 GLY366 LEU367 PRO368 ASN369 ASP370 ALA371 ARG372 PRO373 HIS374 PRO375 ARG376 LEU377 TRP378 GLY379 SER380 PHE381 THR382 ARG383 VAL384 LEU385 GLY386 ARG387 TYR388 VAL389 ARG390 GLU391 ALA392 ARG393 LEU394 MET395 THR396 LEU397 GLU398 GLN399 ALA400 VAL401 ALA402 ARG403 MET404 THR405 ALA406 LEU407 PRO408 ALA409 ARG410 VAL411 PHE412 GLY413 PHE414 ALA415 GLU416 ARG417 GLY418 VAL419 LEU420 GLN421 PRO422 GLY423 ALA424 TRP425 ALA426 ASP427 VAL428 VAL429 VAL430 PHE431 ASP432 PRO433 ASP434 THR435 VAL436 ALA437 ASP438 ARG439 ALA440 THR441 TRP442 ASP443 GLU444 PRO445 THR446 LEU447 ALA448 SER449 VAL450 GLY451 ILE452 ALA453 GLY454 VAL455 LEU456 VAL457 ASN458 GLY459 ALA460 GLU461 VAL462 PHE463 PRO464 GLN465 PRO466 PRO467 ALA468 ASP469 GLY470 ARG471 PRO472 GLY473 GLN474 VAL475 LEU476 ARG477 ALA478 |
Unit 2 | GLU5 LYS6 LEU7 ASP8 PHE9 LYS10 ILE11 THR12 GLY13 GLY14 TRP15 ILE16 ILE17 ASP18 GLY19 THR20 GLY21 ALA22 PRO23 ARG24 ARG25 ARG26 ALA27 ASP28 LEU29 GLY30 VAL31 ARG32 ASP33 GLY34 ARG35 ILE36 ALA37 ALA38 ILE39 GLY40 GLU41 LEU42 GLY43 ALA44 HIS45 PRO46 ALA47 ARG48 HIS49 ALA50 TRP51 ASP52 ALA53 SER54 GLY55 LYS56 ILE57 VAL58 ALA59 PRO60 GLY61 PHE62 ILE63 ASP64 VAL65 HIS66 GLY67 HIS68 ASP69 ASP70 LEU71 MET72 PHE73 VAL74 GLU75 LYS76 PRO77 ASP78 LEU79 ARG80 TRP81 LYS82 THR83 SER84 GLN85 GLY86 ILE87 THR88 THR89 VAL90 VAL91 VAL92 GLY93 ASN94 CYS95 GLY96 VAL97 SER98 ALA99 ALA100 PRO101 ALA102 PRO103 LEU104 PRO105 GLY106 ASN107 THR108 ALA109 ALA110 ALA111 LEU112 ALA113 LEU114 LEU115 GLY116 GLU117 THR118 PRO119 LEU120 PHE121 ALA122 ASP123 VAL124 PRO125 ALA126 TYR127 PHE128 ALA129 ALA130 LEU131 ASP132 ALA133 GLN134 ARG135 PRO136 MET137 ILE138 ASN139 VAL140 ALA141 ALA142 LEU143 VAL144 GLY145 HIS146 ALA147 ASN148 LEU149 ARG150 LEU151 ALA152 ALA153 MET154 ARG155 ASP156 PRO157 GLN158 ALA159 ALA160 PRO161 THR162 ALA163 ALA164 GLU165 GLN166 GLN167 ALA168 MET169 GLN170 ASP171 MET172 LEU173 GLN174 ALA175 ALA176 LEU177 GLU178 ALA179 GLY180 ALA181 VAL182 GLY183 PHE184 SER185 THR186 GLY187 LEU188 ALA189 TYR190 GLN191 PRO192 GLY193 ALA194 VAL195 ALA196 GLN197 ALA198 ALA199 GLU200 LEU201 GLU202 GLY203 LEU204 ALA205 ARG206 VAL207 ALA208 ALA209 GLU210 ARG211 ARG212 ARG213 LEU214 HIS215 THR216 SER217 HIS218 ILE219 ARG220 ASN221 GLU222 ALA223 ASP224 GLY225 VAL226 GLU227 ALA228 ALA229 VAL230 GLU231 GLU232 VAL233 LEU234 ALA235 ILE236 GLY237 ARG238 GLY239 THR240 GLY241 CYS242 ALA243 THR244 VAL245 VAL246 SER247 HIS248 HIS249 LYS250 CYS251 MET252 MET253 PRO254 GLN255 ASN256 TRP257 GLY258 ARG259 SER260 ARG261 ALA262 THR263 LEU264 ALA265 ASN266 ILE267 ASP268 ARG269 ALA270 ARG271 GLU272 GLN273 GLY274 VAL275 GLU276 VAL277 ALA278 LEU279 ASP280 ILE281 TYR282 PRO283 TYR284 PRO285 GLY286 SER287 SER288 THR289 ILE290 LEU291 ILE292 PRO293 GLU294 ARG295 ALA296 GLU297 THR298 ILE299 ASP300 ASP301 ILE302 ARG303 ILE304 THR305 TRP306 SER307 THR308 PRO309 HIS310 PRO311 GLU312 CYS313 SER314 GLY315 GLU316 TYR317 LEU318 ALA319 ASP320 ILE321 ALA322 ALA323 ARG324 TRP325 GLY326 CYS327 ASP328 LYS329 THR330 THR331 ALA332 ALA333 ARG334 ARG335 LEU336 ALA337 PRO338 ALA339 GLY340 ALA341 ILE342 TYR343 PHE344 ALA345 MET346 ASP347 GLU348 ASP349 GLU350 VAL351 LYS352 ARG353 ILE354 PHE355 GLN356 HIS357 PRO358 CYS359 CYS360 MET361 VAL362 GLY363 SER364 ASP365 GLY366 LEU367 PRO368 ASN369 ASP370 ALA371 ARG372 PRO373 HIS374 PRO375 ARG376 LEU377 TRP378 GLY379 SER380 PHE381 THR382 ARG383 VAL384 LEU385 GLY386 ARG387 TYR388 VAL389 ARG390 GLU391 ALA392 ARG393 LEU394 MET395 THR396 LEU397 GLU398 GLN399 ALA400 VAL401 ALA402 ARG403 MET404 THR405 ALA406 LEU407 PRO408 ALA409 ARG410 VAL411 PHE412 GLY413 PHE414 ALA415 GLU416 ARG417 GLY418 VAL419 LEU420 GLN421 PRO422 GLY423 ALA424 TRP425 ALA426 ASP427 VAL428 VAL429 VAL430 PHE431 ASP432 PRO433 ASP434 THR435 VAL436 ALA437 ASP438 ARG439 ALA440 THR441 TRP442 ASP443 GLU444 PRO445 THR446 LEU447 ALA448 SER449 VAL450 GLY451 ILE452 ALA453 GLY454 VAL455 LEU456 VAL457 ASN458 GLY459 ALA460 GLU461 VAL462 PHE463 PRO464 GLN465 PRO466 PRO467 ALA468 ASP469 GLY470 ARG471 PRO472 GLY473 GLN474 VAL475 LEU476 ARG477 ALA478 |
Unit 3 | ACY481 FMT482 FMT483 ZN484 |
Unit 4 | ACY481 FMT482 FMT483 ZN484 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |