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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE TOXOPLASMA GONDII PYRUVATE KINASE N TRUNCATED
Keywords MALARIA, PYRUVATE KINASE, GENOMICS, PROTEOMICS, GLYCOLYSIS, MAGNESIUM, PYRUVATE, TRANSFERASE, STRUCTURAL GENOMICS, STRU GENOMICS CONSORTIUM, SGC
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3GG8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYRUVATE KINASE  A 478 3555 0
2  Protein   PYRUVATE KINASE  B 463 3399 0
3  Protein   PYRUVATE KINASE  C 491 3704 0
4  Protein   PYRUVATE KINASE  D 483 3582 0
5  Ligand   PYRUVATE KINASE  A 2 0 11
6  Ligand   PYRUVATE KINASE  B 1 0 5
7 Water     484 0 484
total       2402 14240 500
Proteins
Unit 1 MET41 SER42 GLN43 ILE44 LEU45 GLU46 PRO47 ARG48 SER49 GLU50 GLU51 ASP52 TRP53 THR54 ALA55 HIS56 ARG57 THR58 ARG59 ILE60 VAL61 CYS62 THR63 MET64 GLY65 PRO66 ALA67 CYS68 TRP69 ASN70 VAL71 ASP72 THR73 LEU74 VAL75 LYS76 MET77 ILE78 ASP79 ALA80 GLY81 MET82 ASN83 VAL84 CYS85 ARG86 LEU87 ASN88 PHE89 SER90 HIS91 GLY92 ASP93 HIS94 GLU95 THR96 HIS97 ALA98 ARG99 THR100 VAL101 GLN102 ASN103 ILE104 GLN105 GLU106 ALA107 MET108 LYS109 GLN110 ARG111 PRO112 GLU113 ALA114 ARG115 LEU116 ALA117 ILE118 LEU119 LEU120 ASP121 THR122 LYS123 GLY124 PRO125 GLU126 ILE127 ARG128 THR129 GLY130 PHE131 PRO137 ILE138 THR139 LEU140 GLN141 GLN142 GLY143 ALA144 THR145 LEU146 LYS147 ILE148 VAL149 THR150 ASP151 TYR152 ASN153 LEU154 ILE155 GLY156 ASP157 GLU158 THR159 THR160 ILE161 ALA162 CYS163 SER164 TYR165 GLY166 ALA167 LEU168 PRO169 GLN170 SER171 VAL172 LYS173 PRO174 GLY175 ASN176 THR177 ILE178 LEU179 ILE180 ALA181 ASP182 GLY183 SER184 LEU185 SER186 VAL187 LYS188 VAL189 VAL190 GLU191 VAL192 GLY193 SER194 ASP195 TYR196 VAL197 ILE198 THR199 GLN200 ALA201 GLN202 ASN203 THR204 ALA205 THR206 ILE207 GLY208 GLU209 ARG210 LYS211 ASN212 MET213 ASN214 LEU215 PRO216 ASN217 VAL218 LYS219 VAL220 GLN221 LEU222 PRO223 VAL224 ILE225 GLY226 GLU227 LYS228 ASP229 LYS230 HIS231 ASP232 ILE233 LEU234 ASN235 PHE236 GLY237 ILE238 PRO239 MET240 GLY241 CYS242 ASN243 PHE244 ILE245 ALA246 ALA247 SER248 PHE249 VAL250 GLN251 SER252 ALA253 ASP254 ASP255 VAL256 ARG257 TYR258 ILE259 ARG260 GLY261 LEU262 LEU263 GLY264 PRO265 ARG266 GLY267 ARG268 HIS269 ILE270 ARG271 ILE272 ILE273 PRO274 LYS275 ILE276 GLU277 ASN278 VAL279 GLU280 GLY281 LEU282 VAL283 ASN284 PHE285 ASP286 GLU287 ILE288 LEU289 ALA290 GLU291 ALA292 ASP293 GLY294 ILE295 MET296 ILE297 ALA298 ARG299 GLY300 ASP301 LEU302 GLY303 MET304 GLU305 ILE306 PRO307 PRO308 GLU309 LYS310 VAL311 PHE312 LEU313 ALA314 GLN315 LYS316 MET317 MET318 ILE319 ALA320 LYS321 CYS322 ASN323 VAL324 VAL325 GLY326 LYS327 PRO328 VAL329 ILE330 THR331 ALA332 THR333 GLN334 MET335 LEU336 GLU337 SER338 MET339 ILE340 LYS341 ASN342 PRO343 ARG344 PRO345 THR346 ARG347 ALA348 GLU349 ALA350 ALA351 ASP352 VAL353 ALA354 ASN355 ALA356 VAL357 LEU358 ASP359 GLY360 THR361 ASP362 CYS363 VAL364 MET365 LEU366 SER367 GLY368 GLU369 THR370 ALA371 ASN372 GLY373 GLU374 PHE375 PRO376 VAL377 ILE378 THR379 VAL380 GLU381 THR382 MET383 ALA384 ARG385 ILE386 CYS387 TYR388 GLU389 ALA390 GLU391 THR392 CYS393 VAL394 ASP395 TYR396 PRO397 ALA398 LEU399 TYR400 ARG401 ALA402 MET403 CYS404 LEU405 ALA406 VAL407 PRO408 PRO409 PRO410 ILE411 SER412 THR413 GLN414 GLU415 ALA416 VAL417 ALA418 ARG419 ALA420 ALA421 VAL422 GLU423 THR424 ALA425 GLU426 CYS427 VAL428 ASN429 ALA430 ALA431 ILE432 ILE433 LEU434 ALA435 LEU436 THR437 GLU438 THR439 GLY440 GLN441 THR442 ALA443 ARG444 LEU445 ILE446 ALA447 LYS448 TYR449 ARG450 PRO451 MET452 GLN453 PRO454 ILE455 LEU456 ALA457 LEU458 SER459 ALA460 SER461 GLU462 SER463 THR464 ILE465 LYS466 HIS467 LEU468 GLN469 VAL470 ILE471 ARG472 GLY473 VAL474 THR475 THR476 MET477 GLN478 VAL479 PRO480 SER481 GLY484 THR485 ASP486 HIS487 VAL488 ILE489 ARG490 ASN491 ALA492 ILE493 VAL494 VAL495 ALA496 LYS497 GLU498 ARG499 GLU500 LEU501 VAL502 THR503 GLU504 GLY505 GLU506 SER507 ILE508 VAL509 ALA510 VAL511 HIS512 GLY513 MET514 SER521 SER522 ASN523 LEU524 LEU525 LYS526 VAL527 LEU528 THR529 VAL530 GLU531
Unit 2 SER42 GLN43 ILE44 LEU45 GLU46 PRO47 ARG48 SER49 GLU50 GLU51 ASP52 TRP53 THR54 ALA55 HIS56 ARG57 THR58 ARG59 ILE60 VAL61 CYS62 THR63 MET64 GLY65 PRO66 ALA67 CYS68 TRP69 ASN70 VAL71 ASP72 THR73 LEU74 VAL75 LYS76 MET77 ILE78 ASP79 ALA80 GLY81 MET82 ASN83 VAL84 CYS85 ARG86 LEU87 ASN88 PHE89 SER90 HIS91 GLY92 ASP93 HIS94 GLU95 THR96 HIS97 ALA98 ARG99 THR100 VAL101 GLN102 ASN103 ILE104 GLN105 GLU106 ALA107 MET108 LYS109 GLN110 ARG111 PRO112 GLU113 ALA114 ARG115 LEU116 ALA117 ILE118 LEU119 LEU120 ASP121 THR122 LYS123 GLY124 PRO125 GLU126 ILE127 ARG128 THR129 GLY130 PHE131 LEU132 LYS133 ASP134 HIS135 LYS136 PRO137 ILE138 THR139 THR145 LEU146 LYS147 ILE148 VAL149 THR150 ASP151 TYR152 ASN153 LEU154 ILE155 GLY156 ASP157 GLU158 THR159 THR160 ILE161 ALA162 CYS163 SER164 TYR165 GLY166 ALA167 LEU168 PRO169 GLN170 SER171 VAL172 PRO174 GLY175 ASN176 THR177 ILE178 LEU179 ILE180 ALA181 ASP182 GLY183 SER184 LEU185 SER186 VAL187 LYS188 VAL189 VAL190 GLU191 VAL192 GLY193 SER194 ASP195 TYR196 VAL197 ILE198 THR199 GLN200 ALA201 GLN202 ASN203 THR204 ALA205 THR206 ILE207 GLY208 GLU209 ARG210 LYS211 ASN212 MET213 ASN214 LEU215 PRO216 ASN217 VAL218 GLN221 LEU222 PRO223 VAL224 ILE225 GLY226 GLU227 LYS228 ASP229 LYS230 HIS231 ASP232 ILE233 LEU234 ASN235 PHE236 GLY237 ILE238 PRO239 MET240 GLY241 CYS242 ASN243 PHE244 ILE245 ALA246 ALA247 SER248 PHE249 VAL250 GLN251 SER252 ALA253 ASP254 ASP255 VAL256 ARG257 TYR258 ILE259 ARG260 GLY261 LEU262 LEU263 GLY264 PRO265 ARG266 GLY267 ARG268 HIS269 ILE270 ARG271 ILE272 ILE273 PRO274 LYS275 ILE276 GLU277 ASN278 VAL279 GLU280 GLY281 LEU282 VAL283 ASN284 PHE285 ASP286 GLU287 ILE288 LEU289 ALA290 GLU291 ALA292 ASP293 GLY294 ILE295 MET296 ILE297 ALA298 ARG299 GLY300 ILE306 PRO307 PRO308 GLU309 LYS310 VAL311 PHE312 LEU313 ALA314 GLN315 LYS316 MET317 MET318 ILE319 ALA320 LYS321 CYS322 ASN323 VAL324 VAL325 GLY326 LYS327 PRO328 VAL329 ILE330 THR331 ALA332 THR333 GLN334 MET335 LEU336 GLU337 SER338 MET339 ILE340 LYS341 ASN342 PRO343 ARG344 PRO345 THR346 ARG347 ALA348 GLU349 ALA350 ALA351 ASP352 VAL353 ALA354 ASN355 ALA356 VAL357 LEU358 ASP359 GLY360 THR361 ASP362 CYS363 VAL364 MET365 LEU366 SER367 GLY368 GLU369 THR370 ALA371 ASN372 GLY373 GLU374 PHE375 PRO376 VAL377 ILE378 THR379 VAL380 GLU381 THR382 MET383 ALA384 ARG385 ILE386 CYS387 TYR388 GLU389 ALA390 GLU391 THR392 CYS393 VAL394 TYR396 PRO397 ALA398 LEU399 TYR400 ARG401 ALA402 MET403 CYS404 ILE411 SER412 THR413 GLN414 GLU415 ALA416 VAL417 ALA418 ARG419 ALA420 ALA421 VAL422 GLU423 THR424 ALA425 GLU426 CYS427 VAL428 ASN429 ALA430 ALA431 ILE432 ILE433 LEU434 ALA435 LEU436 THR437 GLU438 THR439 GLY440 GLN441 THR442 ALA443 ARG444 LEU445 ILE446 ALA447 LYS448 TYR449 ARG450 PRO451 MET452 GLN453 PRO454 ILE455 LEU456 ALA457 LEU458 SER459 ALA460 SER461 GLU462 SER463 THR464 ILE465 LYS466 HIS467 LEU468 GLN469 VAL470 ILE471 ARG472 GLY473 VAL474 THR475 THR476 MET477 GLN478 VAL479 PRO480 SER481 PHE482 GLN483 GLY484 THR485 ASP486 HIS487 VAL488 ILE489 ARG490 ASN491 ALA492 ILE493 VAL494 VAL495 ALA496 LYS497 GLU498 ARG499 GLU500 LEU501 VAL502 THR503 GLU504 GLY505 GLU506 SER507 ILE508 VAL509 ALA510 VAL511 HIS512 GLY513 MET514 SER522 ASN523 LEU524 LEU525 LYS526 VAL527 LEU528 THR529 VAL530 GLU531
Unit 3 PHE36 GLN37 GLY38 ILE39 ARG40 MET41 SER42 GLN43 ILE44 LEU45 GLU46 PRO47 ARG48 SER49 GLU50 GLU51 ASP52 TRP53 THR54 ALA55 HIS56 ARG57 THR58 ARG59 ILE60 VAL61 CYS62 THR63 MET64 GLY65 PRO66 ALA67 CYS68 TRP69 ASN70 VAL71 ASP72 THR73 LEU74 VAL75 LYS76 MET77 ILE78 ASP79 ALA80 GLY81 MET82 ASN83 VAL84 CYS85 ARG86 LEU87 ASN88 PHE89 SER90 HIS91 GLY92 ASP93 HIS94 GLU95 THR96 HIS97 ALA98 ARG99 THR100 VAL101 GLN102 ASN103 ILE104 GLN105 GLU106 ALA107 MET108 LYS109 GLN110 ARG111 PRO112 GLU113 ALA114 ARG115 LEU116 ALA117 ILE118 LEU119 LEU120 ASP121 THR122 LYS123 GLY124 PRO125 GLU126 ILE127 ARG128 THR129 GLY130 PHE131 LEU132 LYS133 ASP134 HIS135 LYS136 PRO137 ILE138 THR139 LEU140 GLN141 GLN142 GLY143 ALA144 THR145 LEU146 LYS147 ILE148 VAL149 THR150 ASP151 TYR152 ASN153 LEU154 ILE155 GLY156 ASP157 GLU158 THR159 THR160 ILE161 ALA162 CYS163 SER164 TYR165 GLY166 ALA167 LEU168 PRO169 GLN170 SER171 VAL172 LYS173 PRO174 GLY175 ASN176 THR177 ILE178 LEU179 ILE180 ALA181 ASP182 GLY183 SER184 LEU185 SER186 VAL187 LYS188 VAL189 VAL190 GLU191 VAL192 GLY193 SER194 ASP195 TYR196 VAL197 ILE198 THR199 GLN200 ALA201 GLN202 ASN203 THR204 ALA205 THR206 ILE207 GLY208 GLU209 ARG210 LYS211 ASN212 MET213 ASN214 LEU215 PRO216 ASN217 VAL218 LYS219 VAL220 GLN221 LEU222 PRO223 VAL224 ILE225 GLY226 GLU227 LYS228 ASP229 LYS230 HIS231 ASP232 ILE233 LEU234 ASN235 PHE236 GLY237 ILE238 PRO239 MET240 GLY241 CYS242 ASN243 PHE244 ILE245 ALA246 ALA247 SER248 PHE249 VAL250 GLN251 SER252 ALA253 ASP254 ASP255 VAL256 ARG257 TYR258 ILE259 ARG260 GLY261 LEU262 LEU263 GLY264 PRO265 ARG266 GLY267 ARG268 HIS269 ILE270 ARG271 ILE272 ILE273 PRO274 LYS275 ILE276 GLU277 ASN278 VAL279 GLU280 GLY281 LEU282 VAL283 ASN284 PHE285 ASP286 GLU287 ILE288 LEU289 ALA290 GLU291 ALA292 ASP293 GLY294 ILE295 MET296 ILE297 ALA298 ARG299 GLY300 ASP301 LEU302 GLY303 MET304 GLU305 ILE306 PRO307 PRO308 GLU309 LYS310 VAL311 PHE312 LEU313 ALA314 GLN315 LYS316 MET317 MET318 ILE319 ALA320 LYS321 CYS322 ASN323 VAL324 VAL325 GLY326 LYS327 PRO328 VAL329 ILE330 THR331 ALA332 THR333 GLN334 MET335 LEU336 GLU337 SER338 MET339 ILE340 LYS341 ASN342 PRO343 ARG344 PRO345 THR346 ARG347 ALA348 GLU349 ALA350 ALA351 ASP352 VAL353 ALA354 ASN355 ALA356 VAL357 LEU358 ASP359 GLY360 THR361 ASP362 CYS363 VAL364 MET365 LEU366 SER367 GLY368 GLU369 THR370 ALA371 ASN372 GLY373 GLU374 PHE375 PRO376 VAL377 ILE378 THR379 VAL380 GLU381 THR382 MET383 ALA384 ARG385 ILE386 CYS387 TYR388 GLU389 ALA390 GLU391 THR392 CYS393 VAL394 ASP395 TYR396 PRO397 ALA398 LEU399 TYR400 ARG401 ALA402 MET403 CYS404 LEU405 ALA406 VAL407 ILE411 SER412 THR413 GLN414 GLU415 ALA416 VAL417 ALA418 ARG419 ALA420 ALA421 VAL422 GLU423 THR424 ALA425 GLU426 CYS427 VAL428 ASN429 ALA430 ALA431 ILE432 ILE433 LEU434 ALA435 LEU436 THR437 GLU438 THR439 GLY440 GLN441 THR442 ALA443 ARG444 LEU445 ILE446 ALA447 LYS448 TYR449 ARG450 PRO451 MET452 GLN453 PRO454 ILE455 LEU456 ALA457 LEU458 SER459 ALA460 SER461 GLU462 SER463 THR464 ILE465 LYS466 HIS467 LEU468 GLN469 VAL470 ILE471 ARG472 GLY473 VAL474 THR475 THR476 MET477 GLN478 VAL479 PRO480 SER481 PHE482 GLN483 GLY484 THR485 ASP486 HIS487 VAL488 ILE489 ARG490 ASN491 ALA492 ILE493 VAL494 VAL495 ALA496 LYS497 GLU498 ARG499 GLU500 LEU501 VAL502 THR503 GLU504 GLY505 GLU506 SER507 ILE508 VAL509 ALA510 VAL511 HIS512 GLY513 MET514 LYS515 GLU516 GLU517 VAL518 SER521 SER522 ASN523 LEU524 LEU525 LYS526 VAL527 LEU528 THR529 VAL530 GLU531
Unit 4 ARG40 MET41 SER42 GLN43 ILE44 LEU45 GLU46 PRO47 ARG48 SER49 GLU50 GLU51 ASP52 TRP53 THR54 ALA55 HIS56 ARG57 THR58 ARG59 ILE60 VAL61 CYS62 THR63 MET64 GLY65 PRO66 ALA67 CYS68 TRP69 ASN70 VAL71 ASP72 THR73 LEU74 VAL75 LYS76 MET77 ILE78 ASP79 ALA80 GLY81 MET82 ASN83 VAL84 CYS85 ARG86 LEU87 ASN88 PHE89 SER90 HIS91 GLY92 ASP93 HIS94 GLU95 THR96 HIS97 ALA98 ARG99 THR100 VAL101 GLN102 ASN103 ILE104 GLN105 GLU106 ALA107 MET108 LYS109 GLN110 ARG111 PRO112 GLU113 ALA114 ARG115 LEU116 ALA117 ILE118 LEU119 LEU120 ASP121 THR122 LYS123 GLY124 PRO125 GLU126 ILE127 ARG128 THR129 GLY130 PHE131 LEU132 LYS133 ASP134 HIS135 LYS136 PRO137 ILE138 THR139 LEU140 GLN141 GLN142 GLY143 ALA144 THR145 LEU146 LYS147 ILE148 VAL149 THR150 ASP151 TYR152 ASN153 LEU154 ILE155 GLY156 ASP157 GLU158 THR159 THR160 ILE161 ALA162 CYS163 SER164 TYR165 GLY166 ALA167 LEU168 PRO169 GLN170 SER171 VAL172 LYS173 PRO174 GLY175 ASN176 THR177 ILE178 LEU179 ILE180 ALA181 ASP182 GLY183 SER184 LEU185 SER186 VAL187 LYS188 VAL189 VAL190 GLU191 VAL192 GLY193 SER194 ASP195 TYR196 VAL197 ILE198 THR199 GLN200 ALA201 GLN202 ASN203 THR204 ALA205 THR206 ILE207 GLY208 GLU209 ARG210 LYS211 ASN212 MET213 ASN214 LEU215 PRO216 ASN217 VAL218 LYS219 VAL220 GLN221 LEU222 PRO223 VAL224 ILE225 GLY226 GLU227 LYS228 ASP229 LYS230 HIS231 ASP232 ILE233 LEU234 ASN235 PHE236 GLY237 ILE238 PRO239 MET240 GLY241 CYS242 ASN243 PHE244 ILE245 ALA246 ALA247 SER248 PHE249 VAL250 GLN251 SER252 ALA253 ASP254 ASP255 VAL256 ARG257 TYR258 ILE259 ARG260 GLY261 LEU262 LEU263 GLY264 PRO265 ARG266 GLY267 ARG268 HIS269 ILE270 ARG271 ILE272 ILE273 PRO274 LYS275 ILE276 GLU277 ASN278 VAL279 GLU280 GLY281 LEU282 VAL283 ASN284 PHE285 ASP286 GLU287 ILE288 LEU289 ALA290 GLU291 ALA292 ASP293 GLY294 ILE295 MET296 ILE297 ALA298 ARG299 GLY300 ASP301 LEU302 GLY303 MET304 GLU305 ILE306 PRO307 PRO308 GLU309 LYS310 VAL311 PHE312 LEU313 ALA314 GLN315 LYS316 MET317 MET318 ILE319 ALA320 LYS321 CYS322 ASN323 VAL324 VAL325 GLY326 LYS327 PRO328 VAL329 ILE330 THR331 ALA332 THR333 GLN334 MET335 LEU336 GLU337 SER338 MET339 ILE340 LYS341 ASN342 PRO343 ARG344 PRO345 THR346 ARG347 ALA348 GLU349 ALA350 ALA351 ASP352 VAL353 ALA354 ASN355 ALA356 VAL357 LEU358 ASP359 GLY360 THR361 ASP362 CYS363 VAL364 MET365 LEU366 SER367 GLY368 GLU369 THR370 ALA371 ASN372 GLY373 GLU374 PHE375 PRO376 VAL377 ILE378 THR379 VAL380 GLU381 THR382 MET383 ALA384 ARG385 ILE386 CYS387 TYR388 GLU389 ALA390 GLU391 THR392 CYS393 VAL394 ASP395 TYR396 PRO397 ALA398 LEU399 TYR400 ARG401 ALA402 MET403 CYS404 LEU405 ALA406 VAL407 PRO410 ILE411 SER412 THR413 GLN414 GLU415 ALA416 VAL417 ALA418 ARG419 ALA420 ALA421 VAL422 GLU423 THR424 ALA425 GLU426 CYS427 VAL428 ASN429 ALA430 ALA431 ILE432 ILE433 LEU434 ALA435 LEU436 THR437 GLU438 THR439 GLY440 GLN441 THR442 ALA443 ARG444 LEU445 ILE446 ALA447 LYS448 TYR449 ARG450 PRO451 MET452 GLN453 PRO454 ILE455 LEU456 ALA457 LEU458 SER459 ALA460 SER461 GLU462 SER463 THR464 ILE465 LYS466 HIS467 LEU468 GLN469 VAL470 ILE471 ARG472 GLY473 VAL474 THR475 THR476 MET477 GLN478 VAL479 PRO480 SER481 PHE482 GLY484 THR485 ASP486 HIS487 VAL488 ILE489 ARG490 ASN491 ALA492 ILE493 VAL494 VAL495 ALA496 LYS497 GLU498 ARG499 LEU501 VAL502 THR503 GLU504 GLY505 GLU506 SER507 ILE508 VAL509 ALA510 VAL511 HIS512 GLY513 MET514 LYS515 SER521 SER522 ASN523 LEU524 LEU525 LYS526 VAL527 LEU528 THR529 VAL530 GLU531
Ligands
Unit 5 SO41 GOL532
Unit 6 SO4532
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany