3GDT - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE D91N MUTANT OF THE OROTIDINE 5'-MON DECARBOXYLASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH AZAURIDINE 5'-MONOPHOSPHATE
• Keywords: OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE, D91N MUTANT, 6-AZA 5'-MONOPHOSPHATE, DECARBOXYLASE, LYASE, PHOSPHOPROTEIN, PYR BIOSYNTHESIS, UBL CONJUGATION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3GDT	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	A	260	2003	0
2	Protein	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	B	260	2003	0
3	Protein	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	C	252	1939	0
4	Protein	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	D	252	1939	0
5	Ligand	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	A	1	0	21
6	Ligand	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	B	1	0	21
7	Ligand	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	C	1	0	21
8	Ligand	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	D	1	0	21
9	Water			533	0	533
total				1561	7884	617

Proteins

Unit 1	LYS 3 ALA 4 THR 5 TYR 6 LYS 7 GLU 8 ARG 9 ALA 10 ALA 11 THR 12 HIS 13 PRO 14 SER 15 PRO 16 VAL 17 ALA 18 ALA 19 LYS 20 LEU 21 PHE 22 ASN 23 ILE 24 MET 25 HIS 26 GLU 27 LYS 28 GLN 29 THR 30 ASN 31 LEU 32 CYS 33 ALA 34 SER 35 LEU 36 ASP 37 VAL 38 ARG 39 THR 40 THR 41 LYS 42 GLU 43 LEU 44 LEU 45 GLU 46 LEU 47 VAL 48 GLU 49 ALA 50 LEU 51 GLY 52 PRO 53 LYS 54 ILE 55 CYS 56 LEU 57 LEU 58 LYS 59 THR 60 HIS 61 VAL 62 ASP 63 ILE 64 LEU 65 THR 66 ASP 67 PHE 68 SER 69 MET 70 GLU 71 GLY 72 THR 73 VAL 74 LYS 75 PRO 76 LEU 77 LYS 78 ALA 79 LEU 80 SER 81 ALA 82 LYS 83 TYR 84 ASN 85 PHE 86 LEU 87 LEU 88 PHE 89 GLU 90 ASN 91 ARG 92 LYS 93 PHE 94 ALA 95 ASP 96 ILE 97 GLY 98 ASN 99 THR 100 VAL 101 LYS 102 LEU 103 GLN 104 TYR 105 SER 106 ALA 107 GLY 108 VAL 109 TYR 110 ARG 111 ILE 112 ALA 113 GLU 114 TRP 115 ALA 116 ASP 117 ILE 118 THR 119 ASN 120 ALA 121 HIS 122 GLY 123 VAL 124 VAL 125 GLY 126 PRO 127 GLY 128 ILE 129 VAL 130 SER 131 GLY 132 LEU 133 LYS 134 GLN 135 ALA 136 ALA 137 GLU 138 GLU 139 VAL 140 THR 141 LYS 142 GLU 143 PRO 144 ARG 145 GLY 146 LEU 147 LEU 148 MET 149 LEU 150 ALA 151 GLU 152 LEU 153 SER 154 CYS 155 LYS 156 GLY 157 SER 158 LEU 159 ALA 160 THR 161 GLY 162 GLU 163 TYR 164 THR 165 LYS 166 GLY 167 THR 168 VAL 169 ASP 170 ILE 171 ALA 172 LYS 173 SER 174 ASP 175 LYS 176 ASP 177 PHE 178 VAL 179 ILE 180 GLY 181 PHE 182 ILE 183 ALA 184 GLN 185 ARG 186 ASP 187 MET 188 GLY 189 GLY 190 ARG 191 ASP 192 GLU 193 GLY 194 TYR 195 ASP 196 TRP 197 LEU 198 ILE 199 MET 200 THR 201 PRO 202 GLY 203 VAL 204 GLY 205 LEU 206 ASP 207 ASP 208 LYS 209 GLY 210 ASP 211 ALA 212 LEU 213 GLY 214 GLN 215 GLN 216 TYR 217 ARG 218 THR 219 VAL 220 ASP 221 ASP 222 VAL 223 VAL 224 SER 225 THR 226 GLY 227 SER 228 ASP 229 ILE 230 ILE 231 ILE 232 VAL 233 GLY 234 ARG 235 GLY 236 LEU 237 PHE 238 ALA 239 LYS 240 GLY 241 ARG 242 ASP 243 ALA 244 LYS 245 VAL 246 GLU 247 GLY 248 GLU 249 ARG 250 TYR 251 ARG 252 LYS 253 ALA 254 GLY 255 TRP 256 GLU 257 ALA 258 TYR 259 LEU 260 ARG 261 ARG 262
Unit 2	LYS 3 ALA 4 THR 5 TYR 6 LYS 7 GLU 8 ARG 9 ALA 10 ALA 11 THR 12 HIS 13 PRO 14 SER 15 PRO 16 VAL 17 ALA 18 ALA 19 LYS 20 LEU 21 PHE 22 ASN 23 ILE 24 MET 25 HIS 26 GLU 27 LYS 28 GLN 29 THR 30 ASN 31 LEU 32 CYS 33 ALA 34 SER 35 LEU 36 ASP 37 VAL 38 ARG 39 THR 40 THR 41 LYS 42 GLU 43 LEU 44 LEU 45 GLU 46 LEU 47 VAL 48 GLU 49 ALA 50 LEU 51 GLY 52 PRO 53 LYS 54 ILE 55 CYS 56 LEU 57 LEU 58 LYS 59 THR 60 HIS 61 VAL 62 ASP 63 ILE 64 LEU 65 THR 66 ASP 67 PHE 68 SER 69 MET 70 GLU 71 GLY 72 THR 73 VAL 74 LYS 75 PRO 76 LEU 77 LYS 78 ALA 79 LEU 80 SER 81 ALA 82 LYS 83 TYR 84 ASN 85 PHE 86 LEU 87 LEU 88 PHE 89 GLU 90 ASN 91 ARG 92 LYS 93 PHE 94 ALA 95 ASP 96 ILE 97 GLY 98 ASN 99 THR 100 VAL 101 LYS 102 LEU 103 GLN 104 TYR 105 SER 106 ALA 107 GLY 108 VAL 109 TYR 110 ARG 111 ILE 112 ALA 113 GLU 114 TRP 115 ALA 116 ASP 117 ILE 118 THR 119 ASN 120 ALA 121 HIS 122 GLY 123 VAL 124 VAL 125 GLY 126 PRO 127 GLY 128 ILE 129 VAL 130 SER 131 GLY 132 LEU 133 LYS 134 GLN 135 ALA 136 ALA 137 GLU 138 GLU 139 VAL 140 THR 141 LYS 142 GLU 143 PRO 144 ARG 145 GLY 146 LEU 147 LEU 148 MET 149 LEU 150 ALA 151 GLU 152 LEU 153 SER 154 CYS 155 LYS 156 GLY 157 SER 158 LEU 159 ALA 160 THR 161 GLY 162 GLU 163 TYR 164 THR 165 LYS 166 GLY 167 THR 168 VAL 169 ASP 170 ILE 171 ALA 172 LYS 173 SER 174 ASP 175 LYS 176 ASP 177 PHE 178 VAL 179 ILE 180 GLY 181 PHE 182 ILE 183 ALA 184 GLN 185 ARG 186 ASP 187 MET 188 GLY 189 GLY 190 ARG 191 ASP 192 GLU 193 GLY 194 TYR 195 ASP 196 TRP 197 LEU 198 ILE 199 MET 200 THR 201 PRO 202 GLY 203 VAL 204 GLY 205 LEU 206 ASP 207 ASP 208 LYS 209 GLY 210 ASP 211 ALA 212 LEU 213 GLY 214 GLN 215 GLN 216 TYR 217 ARG 218 THR 219 VAL 220 ASP 221 ASP 222 VAL 223 VAL 224 SER 225 THR 226 GLY 227 SER 228 ASP 229 ILE 230 ILE 231 ILE 232 VAL 233 GLY 234 ARG 235 GLY 236 LEU 237 PHE 238 ALA 239 LYS 240 GLY 241 ARG 242 ASP 243 ALA 244 LYS 245 VAL 246 GLU 247 GLY 248 GLU 249 ARG 250 TYR 251 ARG 252 LYS 253 ALA 254 GLY 255 TRP 256 GLU 257 ALA 258 TYR 259 LEU 260 ARG 261 ARG 262
Unit 3	LYS 3 ALA 4 THR 5 TYR 6 LYS 7 GLU 8 ARG 9 ALA 10 ALA 11 THR 12 HIS 13 PRO 14 SER 15 PRO 16 VAL 17 ALA 18 ALA 19 LYS 20 LEU 21 PHE 22 ASN 23 ILE 24 MET 25 HIS 26 GLU 27 LYS 28 GLN 29 THR 30 ASN 31 LEU 32 CYS 33 ALA 34 SER 35 LEU 36 ASP 37 VAL 38 ARG 39 THR 40 THR 41 LYS 42 GLU 43 LEU 44 LEU 45 GLU 46 LEU 47 VAL 48 GLU 49 ALA 50 LEU 51 GLY 52 PRO 53 LYS 54 ILE 55 CYS 56 LEU 57 LEU 58 LYS 59 THR 60 HIS 61 VAL 62 ASP 63 ILE 64 LEU 65 THR 66 ASP 67 PHE 68 SER 69 MET 70 GLU 71 GLY 72 THR 73 VAL 74 LYS 75 PRO 76 LEU 77 LYS 78 ALA 79 LEU 80 SER 81 ALA 82 LYS 83 TYR 84 ASN 85 PHE 86 LEU 87 LEU 88 PHE 89 GLU 90 ASN 91 ARG 92 LYS 93 PHE 94 ALA 95 ASP 96 ILE 97 GLY 98 ASN 99 THR 100 VAL 101 LYS 102 LEU 103 GLN 104 TYR 105 SER 106 ALA 107 GLY 108 VAL 109 TYR 110 ARG 111 ILE 112 ALA 113 GLU 114 TRP 115 ALA 116 ASP 117 ILE 118 THR 119 ASN 120 ALA 121 HIS 122 GLY 123 VAL 124 VAL 125 GLY 126 PRO 127 GLY 128 ILE 129 VAL 130 SER 131 GLY 132 LEU 133 LYS 134 GLN 135 ALA 136 ALA 137 GLU 138 GLU 139 VAL 140 THR 141 LYS 142 GLU 143 PRO 144 ARG 145 GLY 146 LEU 147 LEU 148 MET 149 LEU 150 ALA 151 GLU 152 LEU 153 SER 154 CYS 155 LYS 156 GLY 157 SER 158 LEU 159 ALA 160 THR 161 GLY 162 GLU 163 TYR 164 THR 165 LYS 166 GLY 167 THR 168 VAL 169 ASP 170 ILE 171 ALA 172 LYS 173 SER 174 ASP 175 LYS 176 ASP 177 PHE 178 VAL 179 ILE 180 GLY 181 PHE 182 ILE 183 ALA 184 GLN 185 ARG 186 ASP 187 MET 188 GLY 189 GLY 190 ARG 191 ASP 192 GLU 193 GLY 194 TYR 195 ASP 196 TRP 197 LEU 198 ILE 199 MET 200 THR 201 PRO 202 GLY 203 VAL 204 GLY 205 ARG 218 THR 219 VAL 220 ASP 221 ASP 222 VAL 223 VAL 224 SER 225 THR 226 GLY 227 SER 228 ASP 229 ILE 230 ILE 231 ILE 232 VAL 233 GLY 234 ARG 235 GLY 236 LEU 237 PHE 238 ALA 239 LYS 240 GLY 241 ARG 242 ASP 243 ALA 244 LYS 245 VAL 246 GLU 247 GLY 248 GLU 249 ARG 250 TYR 251 ARG 252 LYS 253 ALA 254 GLY 255 TRP 256 GLU 257 ALA 258 TYR 259 LEU 260 ARG 261 ARG 262 CYS 263 GLY 264 GLN 265 GLN 266
Unit 4	LYS 3 ALA 4 THR 5 TYR 6 LYS 7 GLU 8 ARG 9 ALA 10 ALA 11 THR 12 HIS 13 PRO 14 SER 15 PRO 16 VAL 17 ALA 18 ALA 19 LYS 20 LEU 21 PHE 22 ASN 23 ILE 24 MET 25 HIS 26 GLU 27 LYS 28 GLN 29 THR 30 ASN 31 LEU 32 CYS 33 ALA 34 SER 35 LEU 36 ASP 37 VAL 38 ARG 39 THR 40 THR 41 LYS 42 GLU 43 LEU 44 LEU 45 GLU 46 LEU 47 VAL 48 GLU 49 ALA 50 LEU 51 GLY 52 PRO 53 LYS 54 ILE 55 CYS 56 LEU 57 LEU 58 LYS 59 THR 60 HIS 61 VAL 62 ASP 63 ILE 64 LEU 65 THR 66 ASP 67 PHE 68 SER 69 MET 70 GLU 71 GLY 72 THR 73 VAL 74 LYS 75 PRO 76 LEU 77 LYS 78 ALA 79 LEU 80 SER 81 ALA 82 LYS 83 TYR 84 ASN 85 PHE 86 LEU 87 LEU 88 PHE 89 GLU 90 ASN 91 ARG 92 LYS 93 PHE 94 ALA 95 ASP 96 ILE 97 GLY 98 ASN 99 THR 100 VAL 101 LYS 102 LEU 103 GLN 104 TYR 105 SER 106 ALA 107 GLY 108 VAL 109 TYR 110 ARG 111 ILE 112 ALA 113 GLU 114 TRP 115 ALA 116 ASP 117 ILE 118 THR 119 ASN 120 ALA 121 HIS 122 GLY 123 VAL 124 VAL 125 GLY 126 PRO 127 GLY 128 ILE 129 VAL 130 SER 131 GLY 132 LEU 133 LYS 134 GLN 135 ALA 136 ALA 137 GLU 138 GLU 139 VAL 140 THR 141 LYS 142 GLU 143 PRO 144 ARG 145 GLY 146 LEU 147 LEU 148 MET 149 LEU 150 ALA 151 GLU 152 LEU 153 SER 154 CYS 155 LYS 156 GLY 157 SER 158 LEU 159 ALA 160 THR 161 GLY 162 GLU 163 TYR 164 THR 165 LYS 166 GLY 167 THR 168 VAL 169 ASP 170 ILE 171 ALA 172 LYS 173 SER 174 ASP 175 LYS 176 ASP 177 PHE 178 VAL 179 ILE 180 GLY 181 PHE 182 ILE 183 ALA 184 GLN 185 ARG 186 ASP 187 MET 188 GLY 189 GLY 190 ARG 191 ASP 192 GLU 193 GLY 194 TYR 195 ASP 196 TRP 197 LEU 198 ILE 199 MET 200 THR 201 PRO 202 GLY 203 VAL 204 GLY 205 ARG 218 THR 219 VAL 220 ASP 221 ASP 222 VAL 223 VAL 224 SER 225 THR 226 GLY 227 SER 228 ASP 229 ILE 230 ILE 231 ILE 232 VAL 233 GLY 234 ARG 235 GLY 236 LEU 237 PHE 238 ALA 239 LYS 240 GLY 241 ARG 242 ASP 243 ALA 244 LYS 245 VAL 246 GLU 247 GLY 248 GLU 249 ARG 250 TYR 251 ARG 252 LYS 253 ALA 254 GLY 255 TRP 256 GLU 257 ALA 258 TYR 259 LEU 260 ARG 261 ARG 262 CYS 263 GLY 264 GLN 265 GLN 266

Ligands

Unit 5	UP6 301
Unit 6	UP6 301
Unit 7	UP6 301
Unit 8	UP6 301