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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A NATURALLY FOLDED MURINE APOPTOSIS INDUCING FACTOR
Keywords ALPHA AND BETA PROTEIN, ACETYLATION, APOPTOSIS, DNA-BINDING, FAD, FLAVOPROTEIN, MITOCHONDRION, NUCLEUS, OXIDOREDUCTASE, PHOSPHOPROTEIN, TRANSIT PEPTIDE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3GD3     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  A 463 3564 0
2  Protein   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  B 476 3656 0
3  Protein   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  C 467 3594 0
4  Protein   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  D 465 3579 0
5  Other macromolecule   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  E 8 40 0
6  Other macromolecule   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  F 9 45 0
7  Ligand   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  A 1 0 53
8  Ligand   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  B 1 0 53
9  Ligand   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  C 1 0 53
10  Ligand   APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL  D 1 0 53
11 Water     27 0 27
total       1919 14478 239
Proteins
Unit 1 PRO128 SER129 HIS130 VAL131 PRO132 PHE133 LEU134 LEU135 ILE136 GLY137 GLY138 GLY139 THR140 ALA141 ALA142 PHE143 ALA144 ALA145 ALA146 ARG147 SER148 ILE149 ARG150 ALA151 ARG152 ASP153 PRO154 GLY155 ALA156 ARG157 VAL158 LEU159 ILE160 VAL161 SER162 GLU163 ASP164 PRO165 GLU166 LEU167 PRO168 TYR169 MET170 ARG171 PRO172 PRO173 LEU174 SER175 LYS176 GLU177 LEU178 TRP179 PHE180 SER181 ASP182 ASP183 PRO184 ASN185 VAL186 THR187 LYS188 THR189 LEU190 GLN191 PHE192 ARG193 GLN194 TRP195 ASN196 GLY197 LYS198 GLU199 ARG200 SER201 ILE202 TYR203 PHE204 GLN205 PRO206 PRO207 SER208 PHE209 TYR210 VAL211 SER212 ALA213 GLN214 ASP215 LEU216 PRO217 ASN218 ILE219 GLU220 ASN221 GLY222 GLY223 VAL224 ALA225 VAL226 LEU227 THR228 GLY229 LYS230 LYS231 VAL232 VAL233 HIS234 LEU235 ASP236 VAL237 ARG238 GLY239 ASN240 MET241 VAL242 LYS243 LEU244 ASN245 ASP246 GLY247 SER248 GLN249 ILE250 THR251 PHE252 GLU253 LYS254 CYS255 LEU256 ILE257 ALA258 THR259 GLY260 GLY261 THR262 PRO263 ARG264 SER265 LEU266 SER267 ALA268 ILE269 ASP270 ARG271 ALA272 GLY273 ALA274 GLU275 VAL276 LYS277 SER278 ARG279 THR280 THR281 LEU282 PHE283 ARG284 LYS285 ILE286 GLY287 ASP288 PHE289 ARG290 ALA291 LEU292 GLU293 LYS294 ILE295 SER296 ARG297 GLU298 VAL299 LYS300 SER301 ILE302 THR303 VAL304 ILE305 GLY306 GLY307 GLY308 PHE309 LEU310 GLY311 SER312 GLU313 LEU314 ALA315 CYS316 ALA317 LEU318 GLY319 ARG320 LYS321 SER322 GLN323 ALA324 SER325 GLY326 ILE327 GLU328 VAL329 ILE330 GLN331 LEU332 PHE333 PRO334 GLU335 LYS336 GLY337 ASN338 MET339 GLY340 LYS341 ILE342 LEU343 PRO344 GLN345 TYR346 LEU347 SER348 ASN349 TRP350 THR351 MET352 GLU353 LYS354 VAL355 LYS356 ARG357 GLU358 GLY359 VAL360 LYS361 VAL362 MET363 PRO364 ASN365 ALA366 ILE367 VAL368 GLN369 SER370 VAL371 GLY372 VAL373 SER374 GLY375 GLY376 ARG377 LEU378 LEU379 ILE380 LYS381 LEU382 LYS383 ASP384 GLY385 ARG386 LYS387 VAL388 GLU389 THR390 ASP391 HIS392 ILE393 VAL394 THR395 ALA396 VAL397 GLY398 LEU399 GLU400 PRO401 ASN402 VAL403 GLU404 LEU405 ALA406 LYS407 THR408 GLY409 GLY410 LEU411 GLU412 ILE413 ASP414 SER415 ASP416 PHE417 GLY418 GLY419 PHE420 ARG421 VAL422 ASN423 ALA424 GLU425 LEU426 GLN427 ALA428 ARG429 SER430 ASN431 ILE432 TRP433 VAL434 ALA435 GLY436 ASP437 ALA438 ALA439 CYS440 PHE441 TYR442 ASP443 ILE444 LYS445 LEU446 GLY447 ARG448 ARG449 ARG450 VAL451 GLU452 HIS453 HIS454 ASP455 HIS456 ALA457 VAL458 VAL459 SER460 GLY461 ARG462 LEU463 ALA464 GLY465 GLU466 ASN467 MET468 THR469 GLY470 ALA471 ALA472 LYS473 PRO474 TYR475 TRP476 HIS477 GLN478 SER479 MET480 PHE481 TRP482 SER483 ASP484 LEU485 GLY486 PRO487 ASP488 VAL489 GLY490 TYR491 GLU492 ALA493 ILE494 GLY495 LEU496 VAL497 ASP498 SER499 SER500 LEU501 PRO502 THR503 VAL504 GLY505 VAL506 PHE507 ALA508 LYS509 ALA510 THR511 ALA512 GLN513 ASP514 ASN515 PRO516 LYS517 SER518 ALA519 THR520 GLU521 GLN522 SER523 GLY524 THR525 GLY526 ILE527 ARG528 SER529 GLU530 SER531 GLU532 THR533 GLU534 SER535 GLU536 ALA537 ASP558 TYR559 GLY560 LYS561 GLY562 VAL563 ILE564 PHE565 TYR566 LEU567 ARG568 ASP569 LYS570 VAL571 VAL572 VAL573 GLY574 ILE575 VAL576 LEU577 TRP578 ASN579 VAL580 PHE581 ASN582 ARG583 MET584 PRO585 ILE586 ALA587 ARG588 LYS589 ILE590 ILE591 LYS592 ASP593 GLY594 GLU595 GLN596 HIS597 GLU598 ASP599 LEU600 ASN601 GLU602 VAL603 ALA604 LYS605 LEU606 PHE607 ASN608 ILE609 HIS610
Unit 2 ALA127 PRO128 SER129 HIS130 VAL131 PRO132 PHE133 LEU134 LEU135 ILE136 GLY137 GLY138 GLY139 THR140 ALA141 ALA142 PHE143 ALA144 ALA145 ALA146 ARG147 SER148 ILE149 ARG150 ALA151 ARG152 ASP153 PRO154 GLY155 ALA156 ARG157 VAL158 LEU159 ILE160 VAL161 SER162 GLU163 ASP164 PRO165 GLU166 LEU167 PRO168 TYR169 MET170 ARG171 PRO172 PRO173 LEU174 SER175 LYS176 GLU177 LEU178 TRP179 PHE180 SER181 ASP182 ASP183 PRO184 ASN185 VAL186 THR187 LYS188 THR189 LEU190 GLN191 PHE192 ARG193 GLN194 TRP195 ASN196 GLY197 LYS198 GLU199 ARG200 SER201 ILE202 TYR203 PHE204 GLN205 PRO206 PRO207 SER208 PHE209 TYR210 VAL211 SER212 ALA213 GLN214 ASP215 LEU216 PRO217 ASN218 ILE219 GLU220 ASN221 GLY222 GLY223 VAL224 ALA225 VAL226 LEU227 THR228 GLY229 LYS230 LYS231 VAL232 VAL233 HIS234 LEU235 ASP236 VAL237 ARG238 GLY239 ASN240 MET241 VAL242 LYS243 LEU244 ASN245 ASP246 GLY247 SER248 GLN249 ILE250 THR251 PHE252 GLU253 LYS254 CYS255 LEU256 ILE257 ALA258 THR259 GLY260 GLY261 THR262 PRO263 ARG264 SER265 LEU266 SER267 ALA268 ILE269 ASP270 ARG271 ALA272 GLY273 ALA274 GLU275 VAL276 LYS277 SER278 ARG279 THR280 THR281 LEU282 PHE283 ARG284 LYS285 ILE286 GLY287 ASP288 PHE289 ARG290 ALA291 LEU292 GLU293 LYS294 ILE295 SER296 ARG297 GLU298 VAL299 LYS300 SER301 ILE302 THR303 VAL304 ILE305 GLY306 GLY307 GLY308 PHE309 LEU310 GLY311 SER312 GLU313 LEU314 ALA315 CYS316 ALA317 LEU318 GLY319 ARG320 LYS321 SER322 GLN323 ALA324 SER325 GLY326 ILE327 GLU328 VAL329 ILE330 GLN331 LEU332 PHE333 PRO334 GLU335 LYS336 GLY337 ASN338 MET339 GLY340 LYS341 ILE342 LEU343 PRO344 GLN345 TYR346 LEU347 SER348 ASN349 TRP350 THR351 MET352 GLU353 LYS354 VAL355 LYS356 ARG357 GLU358 GLY359 VAL360 LYS361 VAL362 MET363 PRO364 ASN365 ALA366 ILE367 VAL368 GLN369 SER370 VAL371 GLY372 VAL373 SER374 GLY375 GLY376 ARG377 LEU378 LEU379 ILE380 LYS381 LEU382 LYS383 ASP384 GLY385 ARG386 LYS387 VAL388 GLU389 THR390 ASP391 HIS392 ILE393 VAL394 THR395 ALA396 VAL397 GLY398 LEU399 GLU400 PRO401 ASN402 VAL403 GLU404 LEU405 ALA406 LYS407 THR408 GLY409 GLY410 LEU411 GLU412 ILE413 ASP414 SER415 ASP416 PHE417 GLY418 GLY419 PHE420 ARG421 VAL422 ASN423 ALA424 GLU425 LEU426 GLN427 ALA428 ARG429 SER430 ASN431 ILE432 TRP433 VAL434 ALA435 GLY436 ASP437 ALA438 ALA439 CYS440 PHE441 TYR442 ASP443 ILE444 LYS445 LEU446 GLY447 ARG448 ARG449 ARG450 VAL451 GLU452 HIS453 HIS454 ASP455 HIS456 ALA457 VAL458 VAL459 SER460 GLY461 ARG462 LEU463 ALA464 GLY465 GLU466 ASN467 MET468 THR469 GLY470 ALA471 ALA472 LYS473 PRO474 TYR475 TRP476 HIS477 GLN478 SER479 MET480 PHE481 TRP482 SER483 ASP484 LEU485 GLY486 PRO487 ASP488 VAL489 GLY490 TYR491 GLU492 ALA493 ILE494 GLY495 LEU496 VAL497 ASP498 SER499 SER500 LEU501 PRO502 THR503 VAL504 GLY505 VAL506 PHE507 ALA508 LYS509 ALA510 THR511 ALA512 GLN513 ASP514 ASN515 PRO516 LYS517 SER518 ALA519 THR520 GLU521 GLN522 SER523 GLY524 THR525 GLY526 ILE527 ARG528 SER529 GLU530 SER531 GLU532 THR533 GLU534 SER535 GLU536 ALA537 SER538 GLU539 ILE540 THR541 ILE542 PRO543 PRO544 SER545 VAL554 GLU555 GLY556 GLU557 ASP558 TYR559 GLY560 LYS561 GLY562 VAL563 ILE564 PHE565 TYR566 LEU567 ARG568 ASP569 LYS570 VAL571 VAL572 VAL573 GLY574 ILE575 VAL576 LEU577 TRP578 ASN579 VAL580 PHE581 ASN582 ARG583 MET584 PRO585 ILE586 ALA587 ARG588 LYS589 ILE590 ILE591 LYS592 ASP593 GLY594 GLU595 GLN596 HIS597 GLU598 ASP599 LEU600 ASN601 GLU602 VAL603 ALA604 LYS605 LEU606 PHE607 ASN608 ILE609 HIS610
Unit 3 PRO128 SER129 HIS130 VAL131 PRO132 PHE133 LEU134 LEU135 ILE136 GLY137 GLY138 GLY139 THR140 ALA141 ALA142 PHE143 ALA144 ALA145 ALA146 ARG147 SER148 ILE149 ARG150 ALA151 ARG152 ASP153 PRO154 GLY155 ALA156 ARG157 VAL158 LEU159 ILE160 VAL161 SER162 GLU163 ASP164 PRO165 GLU166 LEU167 PRO168 TYR169 MET170 ARG171 PRO172 PRO173 LEU174 SER175 LYS176 GLU177 LEU178 TRP179 PHE180 SER181 ASP182 ASP183 PRO184 ASN185 VAL186 THR187 LYS188 THR189 LEU190 GLN191 PHE192 ARG193 GLN194 TRP195 ASN196 GLY197 LYS198 GLU199 ARG200 SER201 ILE202 TYR203 PHE204 GLN205 PRO206 PRO207 SER208 PHE209 TYR210 VAL211 SER212 ALA213 GLN214 ASP215 LEU216 PRO217 ASN218 ILE219 GLU220 ASN221 GLY222 GLY223 VAL224 ALA225 VAL226 LEU227 THR228 GLY229 LYS230 LYS231 VAL232 VAL233 HIS234 LEU235 ASP236 VAL237 ARG238 GLY239 ASN240 MET241 VAL242 LYS243 LEU244 ASN245 ASP246 GLY247 SER248 GLN249 ILE250 THR251 PHE252 GLU253 LYS254 CYS255 LEU256 ILE257 ALA258 THR259 GLY260 GLY261 THR262 PRO263 ARG264 SER265 LEU266 SER267 ALA268 ILE269 ASP270 ARG271 ALA272 GLY273 ALA274 GLU275 VAL276 LYS277 SER278 ARG279 THR280 THR281 LEU282 PHE283 ARG284 LYS285 ILE286 GLY287 ASP288 PHE289 ARG290 ALA291 LEU292 GLU293 LYS294 ILE295 SER296 ARG297 GLU298 VAL299 LYS300 SER301 ILE302 THR303 VAL304 ILE305 GLY306 GLY307 GLY308 PHE309 LEU310 GLY311 SER312 GLU313 LEU314 ALA315 CYS316 ALA317 LEU318 GLY319 ARG320 LYS321 SER322 GLN323 ALA324 SER325 GLY326 ILE327 GLU328 VAL329 ILE330 GLN331 LEU332 PHE333 PRO334 GLU335 LYS336 GLY337 ASN338 MET339 GLY340 LYS341 ILE342 LEU343 PRO344 GLN345 TYR346 LEU347 SER348 ASN349 TRP350 THR351 MET352 GLU353 LYS354 VAL355 LYS356 ARG357 GLU358 GLY359 VAL360 LYS361 VAL362 MET363 PRO364 ASN365 ALA366 ILE367 VAL368 GLN369 SER370 VAL371 GLY372 VAL373 SER374 GLY375 GLY376 ARG377 LEU378 LEU379 ILE380 LYS381 LEU382 LYS383 ASP384 GLY385 ARG386 LYS387 VAL388 GLU389 THR390 ASP391 HIS392 ILE393 VAL394 THR395 ALA396 VAL397 GLY398 LEU399 GLU400 PRO401 ASN402 VAL403 GLU404 LEU405 ALA406 LYS407 THR408 GLY409 GLY410 LEU411 GLU412 ILE413 ASP414 SER415 ASP416 PHE417 GLY418 GLY419 PHE420 ARG421 VAL422 ASN423 ALA424 GLU425 LEU426 GLN427 ALA428 ARG429 SER430 ASN431 ILE432 TRP433 VAL434 ALA435 GLY436 ASP437 ALA438 ALA439 CYS440 PHE441 TYR442 ASP443 ILE444 LYS445 LEU446 GLY447 ARG448 ARG449 ARG450 VAL451 GLU452 HIS453 HIS454 ASP455 HIS456 ALA457 VAL458 VAL459 SER460 GLY461 ARG462 LEU463 ALA464 GLY465 GLU466 ASN467 MET468 THR469 GLY470 ALA471 ALA472 LYS473 PRO474 TYR475 TRP476 HIS477 GLN478 SER479 MET480 PHE481 TRP482 SER483 ASP484 LEU485 GLY486 PRO487 ASP488 VAL489 GLY490 TYR491 GLU492 ALA493 ILE494 GLY495 LEU496 VAL497 ASP498 SER499 SER500 LEU501 PRO502 THR503 VAL504 GLY505 VAL506 PHE507 ALA508 LYS509 ALA510 THR511 ALA512 GLN513 ASP514 ASN515 PRO516 LYS517 SER518 ALA519 THR520 GLU521 GLN522 SER523 GLY524 THR525 GLY526 ILE527 ARG528 SER529 GLU530 SER531 GLU532 THR533 GLU534 SER535 GLU536 ALA537 SER538 GLU539 ILE540 THR541 ASP558 TYR559 GLY560 LYS561 GLY562 VAL563 ILE564 PHE565 TYR566 LEU567 ARG568 ASP569 LYS570 VAL571 VAL572 VAL573 GLY574 ILE575 VAL576 LEU577 TRP578 ASN579 VAL580 PHE581 ASN582 ARG583 MET584 PRO585 ILE586 ALA587 ARG588 LYS589 ILE590 ILE591 LYS592 ASP593 GLY594 GLU595 GLN596 HIS597 GLU598 ASP599 LEU600 ASN601 GLU602 VAL603 ALA604 LYS605 LEU606 PHE607 ASN608 ILE609 HIS610
Unit 4 PRO128 SER129 HIS130 VAL131 PRO132 PHE133 LEU134 LEU135 ILE136 GLY137 GLY138 GLY139 THR140 ALA141 ALA142 PHE143 ALA144 ALA145 ALA146 ARG147 SER148 ILE149 ARG150 ALA151 ARG152 ASP153 PRO154 GLY155 ALA156 ARG157 VAL158 LEU159 ILE160 VAL161 SER162 GLU163 ASP164 PRO165 GLU166 LEU167 PRO168 TYR169 MET170 ARG171 PRO172 PRO173 LEU174 SER175 LYS176 GLU177 LEU178 TRP179 PHE180 SER181 ASP182 ASP183 PRO184 ASN185 VAL186 THR187 LYS188 THR189 LEU190 GLN191 PHE192 ARG193 GLN194 TRP195 ASN196 GLY197 LYS198 GLU199 ARG200 SER201 ILE202 TYR203 PHE204 GLN205 PRO206 PRO207 SER208 PHE209 TYR210 VAL211 SER212 ALA213 GLN214 ASP215 LEU216 PRO217 ASN218 ILE219 GLU220 ASN221 GLY222 GLY223 VAL224 ALA225 VAL226 LEU227 THR228 GLY229 LYS230 LYS231 VAL232 VAL233 HIS234 LEU235 ASP236 VAL237 ARG238 GLY239 ASN240 MET241 VAL242 LYS243 LEU244 ASN245 ASP246 GLY247 SER248 GLN249 ILE250 THR251 PHE252 GLU253 LYS254 CYS255 LEU256 ILE257 ALA258 THR259 GLY260 GLY261 THR262 PRO263 ARG264 SER265 LEU266 SER267 ALA268 ILE269 ASP270 ARG271 ALA272 GLY273 ALA274 GLU275 VAL276 LYS277 SER278 ARG279 THR280 THR281 LEU282 PHE283 ARG284 LYS285 ILE286 GLY287 ASP288 PHE289 ARG290 ALA291 LEU292 GLU293 LYS294 ILE295 SER296 ARG297 GLU298 VAL299 LYS300 SER301 ILE302 THR303 VAL304 ILE305 GLY306 GLY307 GLY308 PHE309 LEU310 GLY311 SER312 GLU313 LEU314 ALA315 CYS316 ALA317 LEU318 GLY319 ARG320 LYS321 SER322 GLN323 ALA324 SER325 GLY326 ILE327 GLU328 VAL329 ILE330 GLN331 LEU332 PHE333 PRO334 GLU335 LYS336 GLY337 ASN338 MET339 GLY340 LYS341 ILE342 LEU343 PRO344 GLN345 TYR346 LEU347 SER348 ASN349 TRP350 THR351 MET352 GLU353 LYS354 VAL355 LYS356 ARG357 GLU358 GLY359 VAL360 LYS361 VAL362 MET363 PRO364 ASN365 ALA366 ILE367 VAL368 GLN369 SER370 VAL371 GLY372 VAL373 SER374 GLY375 GLY376 ARG377 LEU378 LEU379 ILE380 LYS381 LEU382 LYS383 ASP384 GLY385 ARG386 LYS387 VAL388 GLU389 THR390 ASP391 HIS392 ILE393 VAL394 THR395 ALA396 VAL397 GLY398 LEU399 GLU400 PRO401 ASN402 VAL403 GLU404 LEU405 ALA406 LYS407 THR408 GLY409 GLY410 LEU411 GLU412 ILE413 ASP414 SER415 ASP416 PHE417 GLY418 GLY419 PHE420 ARG421 VAL422 ASN423 ALA424 GLU425 LEU426 GLN427 ALA428 ARG429 SER430 ASN431 ILE432 TRP433 VAL434 ALA435 GLY436 ASP437 ALA438 ALA439 CYS440 PHE441 TYR442 ASP443 ILE444 LYS445 LEU446 GLY447 ARG448 ARG449 ARG450 VAL451 GLU452 HIS453 HIS454 ASP455 HIS456 ALA457 VAL458 VAL459 SER460 GLY461 ARG462 LEU463 ALA464 GLY465 GLU466 ASN467 MET468 THR469 GLY470 ALA471 ALA472 LYS473 PRO474 TYR475 TRP476 HIS477 GLN478 SER479 MET480 PHE481 TRP482 SER483 ASP484 LEU485 GLY486 PRO487 ASP488 VAL489 GLY490 TYR491 GLU492 ALA493 ILE494 GLY495 LEU496 VAL497 ASP498 SER499 SER500 LEU501 PRO502 THR503 VAL504 GLY505 VAL506 PHE507 ALA508 LYS509 ALA510 THR511 ALA512 GLN513 ASP514 ASN515 PRO516 LYS517 SER518 ALA519 THR520 GLU521 GLN522 SER523 GLY524 THR525 GLY526 ILE527 ARG528 SER529 GLU530 SER531 GLU532 THR533 GLU534 SER535 GLU536 ALA537 SER538 GLU557 ASP558 TYR559 GLY560 LYS561 GLY562 VAL563 ILE564 PHE565 TYR566 LEU567 ARG568 ASP569 LYS570 VAL571 VAL572 VAL573 GLY574 ILE575 VAL576 LEU577 TRP578 ASN579 VAL580 PHE581 ASN582 ARG583 MET584 PRO585 ILE586 ALA587 ARG588 LYS589 ILE590 ILE591 LYS592 ASP593 GLY594 GLU595 GLN596 HIS597 GLU598 ASP599 LEU600 ASN601 GLU602 VAL603 ALA604 LYS605 LEU606 PHE607 ASN608 ILE609 HIS610
Other macromolecules
Unit 5 UNK1 UNK2 UNK3 UNK4 UNK5 UNK6 UNK7 UNK8
Unit 6 UNK1 UNK2 UNK3 UNK4 UNK5 UNK6 UNK7 UNK8 UNK9
Ligands
Unit 7 FAD1611
Unit 8 FAD1611
Unit 9 FAD1611
Unit 10 FAD1611
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany