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Title | SINGLE LIGAND OCCUPANCY CRYSTAL STRUCTURE OF CYTOCHROME P450 COMPLEX WITH THE INHIBITOR 1-BIPHENYL-4-METHYL-1H-IMIDAZOLE | |
Keywords | P450, CYTOCHROME P450 2B4, MONOOXYGENASE, OXIDOREDUCTASE, ME PROTEIN, CYP 2B4, CYP LM2, ENDOPLASMIC RETICULUM, HEME, IRO MEMBRANE, METAL-BINDING, MICROSOME, PHOSPHOPROTEIN, POLYMOR | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3G93 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | CYTOCHROME P450 2B4 | A | 454 | 3445 | 0 |
2 | Protein | CYTOCHROME P450 2B4 | B | 442 | 3338 | 0 |
3 | Protein | CYTOCHROME P450 2B4 | C | 442 | 3352 | 0 |
4 | Protein | CYTOCHROME P450 2B4 | D | 440 | 3300 | 0 |
5 | Ligand | CYTOCHROME P450 2B4 | A | 3 | 0 | 79 |
6 | Ligand | CYTOCHROME P450 2B4 | B | 1 | 0 | 43 |
7 | Ligand | CYTOCHROME P450 2B4 | C | 2 | 0 | 61 |
8 | Ligand | CYTOCHROME P450 2B4 | D | 2 | 0 | 61 |
9 | Water | 34 | 0 | 34 | ||
total | 1820 | 13435 | 278 |
Unit 1 | LYS27 GLY28 LYS29 LEU30 PRO31 PRO32 GLY33 PRO34 SER35 PRO36 LEU37 PRO38 VAL39 LEU40 GLY41 ASN42 LEU43 LEU44 GLN45 MET46 ASP47 ARG48 LYS49 GLY50 LEU51 LEU52 ARG53 SER54 PHE55 LEU56 ARG57 LEU58 ARG59 GLU60 LYS61 TYR62 GLY63 ASP64 VAL65 PHE66 THR67 VAL68 TYR69 LEU70 GLY71 SER72 ARG73 PRO74 VAL75 VAL76 VAL77 LEU78 CYS79 GLY80 THR81 ASP82 ALA83 ILE84 ARG85 GLU86 ALA87 LEU88 VAL89 ASP90 GLN91 ALA92 GLU93 ALA94 PHE95 SER96 GLY97 ARG98 GLY99 LYS100 ILE101 ALA102 VAL103 VAL104 ASP105 PRO106 ILE107 PHE108 GLN109 GLY110 TYR111 GLY112 VAL113 ILE114 PHE115 ALA116 ASN117 GLY118 GLU119 ARG120 TRP121 ARG122 ALA123 LEU124 ARG125 ARG126 PHE127 SER128 LEU129 ALA130 THR131 MET132 ARG133 ASP134 PHE135 GLY136 MET137 GLY138 LYS139 ARG140 SER141 VAL142 GLU143 GLU144 ARG145 ILE146 GLN147 GLU148 GLU149 ALA150 ARG151 CYS152 LEU153 VAL154 GLU155 GLU156 LEU157 ARG158 LYS159 SER160 LYS161 GLY162 ALA163 LEU164 LEU165 ASP166 ASN167 THR168 LEU169 LEU170 PHE171 HIS172 SER173 ILE174 THR175 SER176 ASN177 ILE178 ILE179 CYS180 SER181 ILE182 VAL183 PHE184 GLY185 LYS186 ARG187 PHE188 ASP189 TYR190 LYS191 ASP192 PRO193 VAL194 PHE195 LEU196 ARG197 LEU198 LEU199 ASP200 LEU201 PHE202 PHE203 GLN204 SER205 PHE206 SER207 LEU208 ILE209 SER210 SER211 PHE212 SER213 SER214 GLN215 VAL216 PHE217 GLU218 LEU219 PHE220 SER221 GLY222 PHE223 LEU224 LYS225 TYR226 PHE227 PRO228 GLY229 THR230 HIS231 ARG232 GLN233 ILE234 TYR235 ARG236 ASN237 LEU238 GLN239 GLU240 ILE241 ASN242 THR243 PHE244 ILE245 GLY246 GLN247 SER248 VAL249 GLU250 LYS251 HIS252 ARG253 ALA254 THR255 LEU256 ASP257 PRO258 SER259 ASN260 PRO261 ARG262 ASP263 PHE264 ILE265 ASP266 VAL267 TYR268 LEU269 LEU270 ARG271 MET272 GLU273 LYS274 HIS284 HIS285 GLN286 ASN287 LEU288 ILE289 LEU290 THR291 VAL292 LEU293 SER294 LEU295 PHE296 PHE297 ALA298 GLY299 THR300 GLU301 THR302 THR303 SER304 THR305 THR306 LEU307 ARG308 TYR309 GLY310 PHE311 LEU312 LEU313 MET314 LEU315 LYS316 TYR317 PRO318 HIS319 VAL320 THR321 GLU322 ARG323 VAL324 GLN325 LYS326 GLU327 ILE328 GLU329 GLN330 VAL331 ILE332 GLY333 SER334 HIS335 ARG336 PRO337 PRO338 ALA339 LEU340 ASP341 ASP342 ARG343 ALA344 LYS345 MET346 PRO347 TYR348 THR349 ASP350 ALA351 VAL352 ILE353 HIS354 GLU355 ILE356 GLN357 ARG358 LEU359 GLY360 ASP361 LEU362 ILE363 PRO364 PHE365 GLY366 VAL367 PRO368 HIS369 THR370 VAL371 THR372 LYS373 ASP374 THR375 GLN376 PHE377 ARG378 GLY379 TYR380 VAL381 ILE382 PRO383 LYS384 ASN385 THR386 GLU387 VAL388 PHE389 PRO390 VAL391 LEU392 SER393 SER394 ALA395 LEU396 HIS397 ASP398 PRO399 ARG400 TYR401 PHE402 GLU403 THR404 PRO405 ASN406 THR407 PHE408 ASN409 PRO410 GLY411 HIS412 PHE413 LEU414 ASP415 ALA416 ASN417 GLY418 ALA419 LEU420 LYS421 ARG422 ASN423 GLU424 GLY425 PHE426 MET427 PRO428 PHE429 SER430 LEU431 GLY432 LYS433 ARG434 ILE435 CYS436 LEU437 GLY438 GLU439 GLY440 ILE441 ALA442 ARG443 THR444 GLU445 LEU446 PHE447 LEU448 PHE449 PHE450 THR451 THR452 ILE453 LEU454 GLN455 ASN456 PHE457 SER458 ILE459 ALA460 SER461 PRO462 VAL463 PRO464 PRO465 GLU466 ASP467 ILE468 ASP469 LEU470 THR471 PRO472 ARG473 GLU474 GLY478 ASN479 VAL480 PRO481 PRO482 SER483 TYR484 GLN485 ILE486 ARG487 PHE488 LEU489 ALA490 ARG491 HIS492 |
Unit 2 | GLY28 LYS29 LEU30 PRO31 PRO32 GLY33 PRO34 SER35 PRO36 LEU37 PRO38 VAL39 LEU40 GLY41 ASN42 LEU43 LEU44 GLN45 MET46 ASP47 ARG48 LYS49 GLY50 LEU51 LEU52 ARG53 SER54 PHE55 LEU56 ARG57 LEU58 ARG59 GLU60 LYS61 TYR62 GLY63 ASP64 VAL65 PHE66 THR67 VAL68 TYR69 LEU70 GLY71 SER72 ARG73 PRO74 VAL75 VAL76 VAL77 LEU78 CYS79 GLY80 THR81 ASP82 ALA83 ILE84 ARG85 GLU86 ALA87 LEU88 VAL89 ASP90 GLN91 ALA92 GLU93 ALA94 PHE95 SER96 GLY97 ARG98 GLY99 LYS100 ILE101 ALA102 VAL103 VAL104 ASP105 PRO106 ILE107 PHE108 GLN109 GLY110 TYR111 GLY112 VAL113 ILE114 PHE115 ALA116 ASN117 GLY118 GLU119 ARG120 TRP121 ARG122 ALA123 LEU124 ARG125 ARG126 PHE127 SER128 LEU129 ALA130 THR131 MET132 ARG133 ARG140 SER141 VAL142 GLU143 GLU144 ARG145 ILE146 GLN147 GLU148 GLU149 ALA150 ARG151 CYS152 LEU153 VAL154 GLU155 GLU156 LEU157 ARG158 LYS159 SER160 LYS161 GLY162 ALA163 LEU164 LEU165 ASP166 ASN167 THR168 LEU169 LEU170 PHE171 HIS172 SER173 ILE174 THR175 SER176 ASN177 ILE178 ILE179 CYS180 SER181 ILE182 VAL183 PHE184 GLY185 LYS186 ARG187 PHE188 ASP189 TYR190 LYS191 ASP192 PRO193 VAL194 PHE195 LEU196 ARG197 LEU198 LEU199 ASP200 LEU201 PHE202 PHE203 GLN204 SER205 PHE206 SER207 LEU208 ILE209 SER210 SER211 PHE212 SER213 SER214 GLN215 VAL216 PHE217 GLU218 LEU219 PHE220 SER221 GLY222 PHE223 LEU224 LYS225 TYR226 PHE227 PRO228 GLY229 THR230 HIS231 ARG232 GLN233 ILE234 TYR235 ARG236 ASN237 LEU238 GLN239 GLU240 ILE241 ASN242 THR243 PHE244 ILE245 GLY246 GLN247 SER248 VAL249 GLU250 LYS251 HIS252 ARG253 ALA254 THR255 LEU256 ASP257 PRO258 SER259 ASN260 PRO261 ARG262 ASP263 PHE264 ILE265 ASP266 VAL267 TYR268 LEU269 LEU270 ARG271 MET272 GLU273 LYS274 HIS285 GLN286 ASN287 LEU288 ILE289 LEU290 THR291 VAL292 LEU293 SER294 LEU295 PHE296 PHE297 ALA298 GLY299 THR300 GLU301 THR302 THR303 SER304 THR305 THR306 LEU307 ARG308 TYR309 GLY310 PHE311 LEU312 LEU313 MET314 LEU315 LYS316 TYR317 PRO318 HIS319 VAL320 THR321 GLU322 ARG323 VAL324 GLN325 LYS326 GLU327 ILE328 GLU329 GLN330 VAL331 ILE332 GLY333 SER334 HIS335 ARG336 PRO337 PRO338 ALA339 LEU340 ASP341 ASP342 ARG343 ALA344 LYS345 MET346 PRO347 TYR348 THR349 ASP350 ALA351 VAL352 ILE353 HIS354 GLU355 ILE356 GLN357 ARG358 LEU359 GLY360 ASP361 LEU362 ILE363 PRO364 PHE365 GLY366 VAL367 PRO368 HIS369 THR370 VAL371 THR372 LYS373 ASP374 THR375 GLN376 PHE377 ARG378 GLY379 TYR380 VAL381 ILE382 PRO383 LYS384 ASN385 THR386 GLU387 VAL388 PHE389 PRO390 VAL391 LEU392 SER393 SER394 ALA395 LEU396 HIS397 ASP398 PRO399 ARG400 TYR401 PHE402 GLU403 THR404 PRO405 ASN406 THR407 PHE408 ASN409 PRO410 GLY411 HIS412 PHE413 LEU414 ASP415 ALA416 ASN417 GLY418 ALA419 LEU420 LYS421 ARG422 ASN423 GLU424 GLY425 PHE426 MET427 PRO428 PHE429 SER430 LEU431 GLY432 LYS433 ARG434 ILE435 CYS436 LEU437 GLY438 GLU439 GLY440 ILE441 ALA442 ARG443 THR444 GLU445 LEU446 PHE447 LEU448 PHE449 PHE450 THR451 THR452 ILE453 LEU454 GLN455 ASN456 PHE457 SER458 ILE459 ALA460 SER461 PRO462 VAL463 PRO464 PRO465 GLU466 ASP467 ILE468 ASP469 LEU470 THR471 ASN479 VAL480 PRO481 PRO482 SER483 TYR484 GLN485 ILE486 ARG487 PHE488 LEU489 ALA490 ARG491 HIS492 |
Unit 3 | GLY28 LYS29 LEU30 PRO31 PRO32 GLY33 PRO34 SER35 PRO36 LEU37 PRO38 VAL39 LEU40 GLY41 ASN42 LEU43 LEU44 GLN45 MET46 ASP47 ARG48 LYS49 GLY50 LEU51 LEU52 ARG53 SER54 PHE55 LEU56 ARG57 LEU58 ARG59 GLU60 LYS61 TYR62 GLY63 ASP64 VAL65 PHE66 THR67 VAL68 TYR69 LEU70 GLY71 SER72 ARG73 PRO74 VAL75 VAL76 VAL77 LEU78 CYS79 GLY80 THR81 ASP82 ALA83 ILE84 ARG85 GLU86 ALA87 LEU88 VAL89 ASP90 GLN91 ALA92 GLU93 ALA94 PHE95 SER96 GLY97 ARG98 GLY99 LYS100 ILE101 ALA102 VAL103 VAL104 ASP105 PRO106 ILE107 PHE108 GLN109 GLY110 TYR111 GLY112 VAL113 ILE114 PHE115 ALA116 ASN117 GLY118 GLU119 ARG120 TRP121 ARG122 ALA123 LEU124 ARG125 ARG126 PHE127 SER128 LEU129 ALA130 THR131 MET132 ARG133 ARG140 SER141 VAL142 GLU143 GLU144 ARG145 ILE146 GLN147 GLU148 GLU149 ALA150 ARG151 CYS152 LEU153 VAL154 GLU155 GLU156 LEU157 ARG158 LYS159 SER160 LYS161 GLY162 ALA163 LEU164 LEU165 ASP166 ASN167 THR168 LEU169 LEU170 PHE171 HIS172 SER173 ILE174 THR175 SER176 ASN177 ILE178 ILE179 CYS180 SER181 ILE182 VAL183 PHE184 GLY185 LYS186 ARG187 PHE188 ASP189 TYR190 LYS191 ASP192 PRO193 VAL194 PHE195 LEU196 ARG197 LEU198 LEU199 ASP200 LEU201 PHE202 PHE203 GLN204 SER205 PHE206 SER207 LEU208 ILE209 SER210 SER211 PHE212 SER213 SER214 GLN215 VAL216 PHE217 GLU218 LEU219 PHE220 SER221 GLY222 PHE223 LEU224 LYS225 TYR226 PHE227 PRO228 GLY229 THR230 HIS231 ARG232 GLN233 ILE234 TYR235 ARG236 ASN237 LEU238 GLN239 GLU240 ILE241 ASN242 THR243 PHE244 ILE245 GLY246 GLN247 SER248 VAL249 GLU250 LYS251 HIS252 ARG253 ALA254 THR255 LEU256 ASP257 PRO258 SER259 ASN260 PRO261 ARG262 ASP263 PHE264 ILE265 ASP266 VAL267 TYR268 LEU269 LEU270 ARG271 MET272 GLU273 PHE283 HIS284 HIS285 GLN286 ASN287 LEU288 ILE289 LEU290 THR291 VAL292 LEU293 SER294 LEU295 PHE296 PHE297 ALA298 GLY299 THR300 GLU301 THR302 THR303 SER304 THR305 THR306 LEU307 ARG308 TYR309 GLY310 PHE311 LEU312 LEU313 MET314 LEU315 LYS316 TYR317 PRO318 HIS319 VAL320 THR321 GLU322 ARG323 VAL324 GLN325 LYS326 GLU327 ILE328 GLU329 GLN330 VAL331 ILE332 GLY333 SER334 HIS335 ARG336 PRO337 PRO338 ALA339 LEU340 ASP341 ASP342 ARG343 ALA344 LYS345 MET346 PRO347 TYR348 THR349 ASP350 ALA351 VAL352 ILE353 HIS354 GLU355 ILE356 GLN357 ARG358 LEU359 GLY360 ASP361 LEU362 ILE363 PRO364 PHE365 GLY366 VAL367 PRO368 HIS369 THR370 VAL371 THR372 LYS373 ASP374 THR375 GLN376 PHE377 ARG378 GLY379 TYR380 VAL381 ILE382 PRO383 LYS384 ASN385 THR386 GLU387 VAL388 PHE389 PRO390 VAL391 LEU392 SER393 SER394 ALA395 LEU396 HIS397 ASP398 PRO399 ARG400 TYR401 PHE402 GLU403 THR404 PRO405 ASN406 THR407 PHE408 ASN409 PRO410 GLY411 HIS412 PHE413 LEU414 ASP415 ALA416 ASN417 GLY418 ALA419 LEU420 LYS421 ARG422 ASN423 GLU424 GLY425 PHE426 MET427 PRO428 PHE429 SER430 LEU431 GLY432 LYS433 ARG434 ILE435 CYS436 LEU437 GLY438 GLU439 GLY440 ILE441 ALA442 ARG443 THR444 GLU445 LEU446 PHE447 LEU448 PHE449 PHE450 THR451 THR452 ILE453 LEU454 GLN455 ASN456 PHE457 SER458 ILE459 ALA460 SER461 PRO462 VAL463 PRO464 PRO465 GLU466 ASP467 ILE468 ASP469 LEU470 THR471 PRO472 VAL480 PRO481 PRO482 SER483 TYR484 GLN485 ILE486 ARG487 PHE488 LEU489 ALA490 ARG491 |
Unit 4 | GLY28 LYS29 LEU30 PRO31 PRO32 GLY33 PRO34 SER35 PRO36 LEU37 PRO38 VAL39 LEU40 GLY41 ASN42 LEU43 LEU44 GLN45 MET46 ASP47 ARG48 LYS49 GLY50 LEU51 LEU52 ARG53 SER54 PHE55 LEU56 ARG57 LEU58 ARG59 GLU60 LYS61 TYR62 GLY63 ASP64 VAL65 PHE66 THR67 VAL68 TYR69 LEU70 GLY71 SER72 ARG73 PRO74 VAL75 VAL76 VAL77 LEU78 CYS79 GLY80 THR81 ASP82 ALA83 ILE84 ARG85 GLU86 ALA87 LEU88 VAL89 ASP90 GLN91 ALA92 GLU93 ALA94 PHE95 SER96 GLY97 ARG98 GLY99 LYS100 ILE101 ALA102 VAL103 VAL104 ASP105 PRO106 ILE107 PHE108 GLN109 GLY110 TYR111 GLY112 VAL113 ILE114 PHE115 ALA116 ASN117 GLY118 GLU119 ARG120 TRP121 ARG122 ALA123 LEU124 ARG125 ARG126 PHE127 SER128 LEU129 ALA130 THR131 MET132 SER141 VAL142 GLU143 GLU144 ARG145 ILE146 GLN147 GLU148 GLU149 ALA150 ARG151 CYS152 LEU153 VAL154 GLU155 GLU156 LEU157 ARG158 LYS159 SER160 LYS161 GLY162 ALA163 LEU164 LEU165 ASP166 ASN167 THR168 LEU169 LEU170 PHE171 HIS172 SER173 ILE174 THR175 SER176 ASN177 ILE178 ILE179 CYS180 SER181 ILE182 VAL183 PHE184 GLY185 LYS186 ARG187 PHE188 ASP189 TYR190 LYS191 ASP192 PRO193 VAL194 PHE195 LEU196 ARG197 LEU198 LEU199 ASP200 LEU201 PHE202 PHE203 GLN204 SER205 PHE206 SER207 LEU208 ILE209 SER210 SER211 PHE212 SER213 SER214 GLN215 VAL216 PHE217 GLU218 LEU219 PHE220 SER221 GLY222 PHE223 LEU224 LYS225 TYR226 PHE227 PRO228 GLY229 THR230 HIS231 ARG232 GLN233 ILE234 TYR235 ARG236 ASN237 LEU238 GLN239 GLU240 ILE241 ASN242 THR243 PHE244 ILE245 GLY246 GLN247 SER248 VAL249 GLU250 LYS251 HIS252 ARG253 ALA254 THR255 LEU256 ASP257 PRO258 SER259 ASN260 PRO261 ARG262 ASP263 PHE264 ILE265 ASP266 VAL267 TYR268 LEU269 LEU270 ARG271 MET272 GLU273 LYS274 ASP275 HIS285 GLN286 ASN287 LEU288 ILE289 LEU290 THR291 VAL292 LEU293 SER294 LEU295 PHE296 PHE297 ALA298 GLY299 THR300 GLU301 THR302 THR303 SER304 THR305 THR306 LEU307 ARG308 TYR309 GLY310 PHE311 LEU312 LEU313 MET314 LEU315 LYS316 TYR317 PRO318 HIS319 VAL320 THR321 GLU322 ARG323 VAL324 GLN325 LYS326 GLU327 ILE328 GLU329 GLN330 VAL331 ILE332 GLY333 SER334 HIS335 ARG336 PRO337 PRO338 ALA339 LEU340 ASP341 ASP342 ARG343 ALA344 LYS345 MET346 PRO347 TYR348 THR349 ASP350 ALA351 VAL352 ILE353 HIS354 GLU355 ILE356 GLN357 ARG358 LEU359 GLY360 ASP361 LEU362 ILE363 PRO364 PHE365 GLY366 VAL367 PRO368 HIS369 THR370 VAL371 THR372 LYS373 ASP374 THR375 GLN376 PHE377 ARG378 GLY379 TYR380 VAL381 ILE382 PRO383 LYS384 ASN385 THR386 GLU387 VAL388 PHE389 PRO390 VAL391 LEU392 SER393 SER394 ALA395 LEU396 HIS397 ASP398 PRO399 ARG400 TYR401 PHE402 GLU403 THR404 PRO405 ASN406 THR407 PHE408 ASN409 PRO410 GLY411 HIS412 PHE413 LEU414 ASP415 ALA416 ASN417 GLY418 ALA419 LEU420 LYS421 ARG422 ASN423 GLU424 GLY425 PHE426 MET427 PRO428 PHE429 SER430 LEU431 GLY432 LYS433 ARG434 ILE435 CYS436 LEU437 GLY438 GLU439 GLY440 ILE441 ALA442 ARG443 THR444 GLU445 LEU446 PHE447 LEU448 PHE449 PHE450 THR451 THR452 ILE453 LEU454 GLN455 ASN456 PHE457 SER458 ILE459 ALA460 SER461 PRO462 VAL463 PRO464 PRO465 GLU466 ASP467 ILE468 ASP469 LEU470 THR471 PRO472 VAL480 PRO481 PRO482 SER483 TYR484 GLN485 ILE486 ARG487 PHE488 LEU489 ALA490 ARG491 |
Unit 5 | PB2496 HEM500 PB2501 |
Unit 6 | HEM500 |
Unit 7 | HEM500 PB2501 |
Unit 8 | HEM500 PB2501 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |